Experiment: Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_4055 and Psest_4056 are separated by 77 nucleotides Psest_4056 and Psest_4057 are separated by 16 nucleotides Psest_4057 and Psest_4058 are separated by 47 nucleotides Psest_4058 and Psest_4059 are separated by 257 nucleotides
Psest_4055: Psest_4055 - ABC transporter, substrate-binding protein, aliphatic sulfonates family, at 4,228,075 to 4,229,040
_4055
Psest_4056: Psest_4056 - FMN reductase, SsuE family, at 4,229,118 to 4,229,732
_4056
Psest_4057: Psest_4057 - Peroxiredoxin, at 4,229,749 to 4,230,387
_4057
Psest_4058: Psest_4058 - Predicted esterase of the alpha/beta hydrolase fold, at 4,230,435 to 4,231,010
_4058
Psest_4059: Psest_4059 - Uncharacterized small protein, at 4,231,268 to 4,231,447
_4059
Position (kb)
4229
4230
4231 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4228.931 kb on + strand, within Psest_4055 at 4229.100 kb on - strand at 4229.100 kb on - strand at 4229.147 kb on - strand at 4229.320 kb on + strand, within Psest_4056 at 4229.321 kb on - strand, within Psest_4056 at 4229.503 kb on + strand, within Psest_4056 at 4229.503 kb on + strand, within Psest_4056 at 4229.503 kb on + strand, within Psest_4056 at 4229.503 kb on + strand, within Psest_4056 at 4229.504 kb on - strand, within Psest_4056 at 4229.504 kb on - strand, within Psest_4056 at 4229.504 kb on - strand, within Psest_4056 at 4230.065 kb on + strand, within Psest_4057 at 4230.065 kb on + strand, within Psest_4057 at 4230.065 kb on + strand, within Psest_4057 at 4230.065 kb on + strand, within Psest_4057 at 4230.065 kb on + strand, within Psest_4057 at 4230.065 kb on + strand, within Psest_4057 at 4230.065 kb on + strand, within Psest_4057 at 4230.066 kb on - strand, within Psest_4057 at 4230.223 kb on + strand, within Psest_4057 at 4230.223 kb on + strand, within Psest_4057 at 4230.223 kb on + strand, within Psest_4057 at 4230.223 kb on + strand, within Psest_4057 at 4230.223 kb on + strand, within Psest_4057 at 4230.223 kb on + strand, within Psest_4057 at 4230.224 kb on - strand, within Psest_4057 at 4230.224 kb on - strand, within Psest_4057 at 4230.533 kb on + strand, within Psest_4058 at 4230.534 kb on - strand, within Psest_4058 at 4231.044 kb on + strand at 4231.045 kb on - strand at 4231.152 kb on - strand at 4231.197 kb on + strand at 4231.197 kb on + strand at 4231.197 kb on + strand at 4231.197 kb on + strand at 4231.198 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.008 mg/ml remove 4,228,931 + Psest_4055 0.89 +0.1 4,229,100 - +0.7 4,229,100 - +0.7 4,229,147 - -0.8 4,229,320 + Psest_4056 0.33 +0.8 4,229,321 - Psest_4056 0.33 +1.4 4,229,503 + Psest_4056 0.63 +1.4 4,229,503 + Psest_4056 0.63 -0.2 4,229,503 + Psest_4056 0.63 +0.1 4,229,503 + Psest_4056 0.63 -1.2 4,229,504 - Psest_4056 0.63 -0.0 4,229,504 - Psest_4056 0.63 +0.0 4,229,504 - Psest_4056 0.63 -1.6 4,230,065 + Psest_4057 0.49 +0.6 4,230,065 + Psest_4057 0.49 +3.3 4,230,065 + Psest_4057 0.49 -1.7 4,230,065 + Psest_4057 0.49 +0.2 4,230,065 + Psest_4057 0.49 +1.2 4,230,065 + Psest_4057 0.49 +1.5 4,230,065 + Psest_4057 0.49 +0.4 4,230,066 - Psest_4057 0.50 -0.3 4,230,223 + Psest_4057 0.74 -1.9 4,230,223 + Psest_4057 0.74 +1.3 4,230,223 + Psest_4057 0.74 -2.4 4,230,223 + Psest_4057 0.74 +1.1 4,230,223 + Psest_4057 0.74 +0.7 4,230,223 + Psest_4057 0.74 -0.2 4,230,224 - Psest_4057 0.74 +3.1 4,230,224 - Psest_4057 0.74 +1.2 4,230,533 + Psest_4058 0.17 -0.4 4,230,534 - Psest_4058 0.17 -0.5 4,231,044 + +1.3 4,231,045 - +1.3 4,231,152 - +1.1 4,231,197 + +0.3 4,231,197 + -0.2 4,231,197 + +0.1 4,231,197 + -0.6 4,231,198 - -1.9
Or see this region's nucleotide sequence