Experiment: Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2899 and Psest_2900 overlap by 8 nucleotides Psest_2900 and Psest_2901 are separated by 12 nucleotides Psest_2901 and Psest_2902 are separated by 67 nucleotides Psest_2902 and Psest_2903 overlap by 4 nucleotides
Psest_2899: Psest_2899 - hypothetical protein, at 3,094,729 to 3,094,983
_2899
Psest_2900: Psest_2900 - hypothetical protein, at 3,094,976 to 3,095,365
_2900
Psest_2901: Psest_2901 - hypothetical protein, at 3,095,378 to 3,095,749
_2901
Psest_2902: Psest_2902 - hypothetical protein, at 3,095,817 to 3,097,097
_2902
Psest_2903: Psest_2903 - Site-specific recombinase XerD, at 3,097,094 to 3,098,092
_2903
Position (kb)
3095
3096
3097
3098 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3094.969 kb on + strand at 3094.969 kb on + strand at 3095.021 kb on + strand, within Psest_2900 at 3095.022 kb on - strand, within Psest_2900 at 3095.022 kb on - strand, within Psest_2900 at 3095.022 kb on - strand, within Psest_2900 at 3095.075 kb on + strand, within Psest_2900 at 3095.075 kb on + strand, within Psest_2900 at 3095.075 kb on + strand, within Psest_2900 at 3095.092 kb on + strand, within Psest_2900 at 3095.092 kb on + strand, within Psest_2900 at 3095.092 kb on + strand, within Psest_2900 at 3095.126 kb on + strand, within Psest_2900 at 3095.253 kb on + strand, within Psest_2900 at 3095.253 kb on + strand, within Psest_2900 at 3095.253 kb on + strand, within Psest_2900 at 3095.253 kb on + strand, within Psest_2900 at 3095.254 kb on - strand, within Psest_2900 at 3095.254 kb on - strand, within Psest_2900 at 3095.388 kb on + strand at 3095.388 kb on + strand at 3095.651 kb on - strand, within Psest_2901 at 3095.651 kb on - strand, within Psest_2901 at 3095.704 kb on + strand, within Psest_2901 at 3095.803 kb on + strand at 3095.809 kb on + strand at 3095.810 kb on - strand at 3095.898 kb on + strand at 3095.898 kb on + strand at 3095.901 kb on - strand at 3096.085 kb on - strand, within Psest_2902 at 3096.085 kb on - strand, within Psest_2902 at 3096.178 kb on + strand, within Psest_2902 at 3096.178 kb on + strand, within Psest_2902 at 3096.234 kb on + strand, within Psest_2902 at 3096.234 kb on + strand, within Psest_2902 at 3096.234 kb on + strand, within Psest_2902 at 3096.235 kb on - strand, within Psest_2902 at 3096.235 kb on - strand, within Psest_2902 at 3096.371 kb on - strand, within Psest_2902 at 3096.414 kb on + strand, within Psest_2902 at 3096.471 kb on + strand, within Psest_2902 at 3096.471 kb on + strand, within Psest_2902 at 3096.471 kb on + strand, within Psest_2902 at 3096.471 kb on + strand, within Psest_2902 at 3096.472 kb on - strand, within Psest_2902 at 3096.472 kb on - strand, within Psest_2902 at 3096.472 kb on - strand, within Psest_2902 at 3096.472 kb on - strand, within Psest_2902 at 3096.472 kb on - strand, within Psest_2902 at 3096.472 kb on - strand, within Psest_2902 at 3096.570 kb on + strand, within Psest_2902 at 3096.570 kb on + strand, within Psest_2902 at 3096.570 kb on + strand, within Psest_2902 at 3096.571 kb on - strand, within Psest_2902 at 3096.571 kb on - strand, within Psest_2902 at 3096.571 kb on - strand, within Psest_2902 at 3096.765 kb on + strand, within Psest_2902 at 3096.768 kb on + strand, within Psest_2902 at 3096.768 kb on + strand, within Psest_2902 at 3096.768 kb on + strand, within Psest_2902 at 3096.769 kb on - strand, within Psest_2902 at 3096.808 kb on + strand, within Psest_2902 at 3096.809 kb on - strand, within Psest_2902 at 3096.846 kb on + strand, within Psest_2902 at 3096.847 kb on - strand, within Psest_2902 at 3096.858 kb on + strand, within Psest_2902 at 3096.858 kb on + strand, within Psest_2902 at 3096.858 kb on + strand, within Psest_2902 at 3096.858 kb on + strand, within Psest_2902 at 3096.858 kb on + strand, within Psest_2902 at 3096.858 kb on + strand, within Psest_2902 at 3096.858 kb on + strand, within Psest_2902 at 3096.858 kb on + strand, within Psest_2902 at 3096.858 kb on + strand, within Psest_2902 at 3096.859 kb on - strand, within Psest_2902 at 3096.859 kb on - strand, within Psest_2902 at 3096.859 kb on - strand, within Psest_2902 at 3096.859 kb on - strand, within Psest_2902 at 3096.859 kb on - strand, within Psest_2902 at 3096.859 kb on - strand, within Psest_2902 at 3096.859 kb on - strand, within Psest_2902 at 3096.859 kb on - strand, within Psest_2902 at 3096.916 kb on + strand, within Psest_2902 at 3097.038 kb on + strand at 3097.038 kb on + strand at 3097.038 kb on + strand at 3097.039 kb on - strand at 3097.039 kb on - strand at 3097.142 kb on - strand at 3097.142 kb on - strand at 3097.213 kb on + strand, within Psest_2903 at 3097.226 kb on + strand, within Psest_2903 at 3097.227 kb on - strand, within Psest_2903 at 3097.227 kb on - strand, within Psest_2903 at 3097.284 kb on - strand, within Psest_2903 at 3097.562 kb on + strand, within Psest_2903 at 3097.563 kb on - strand, within Psest_2903 at 3098.090 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.008 mg/ml remove 3,094,969 + +2.8 3,094,969 + -2.6 3,095,021 + Psest_2900 0.12 +1.2 3,095,022 - Psest_2900 0.12 +1.3 3,095,022 - Psest_2900 0.12 -0.1 3,095,022 - Psest_2900 0.12 +0.3 3,095,075 + Psest_2900 0.25 -0.5 3,095,075 + Psest_2900 0.25 +1.7 3,095,075 + Psest_2900 0.25 +0.9 3,095,092 + Psest_2900 0.30 -0.1 3,095,092 + Psest_2900 0.30 -1.1 3,095,092 + Psest_2900 0.30 +0.1 3,095,126 + Psest_2900 0.38 +0.5 3,095,253 + Psest_2900 0.71 -1.6 3,095,253 + Psest_2900 0.71 -1.3 3,095,253 + Psest_2900 0.71 +0.8 3,095,253 + Psest_2900 0.71 +0.4 3,095,254 - Psest_2900 0.71 -0.9 3,095,254 - Psest_2900 0.71 +1.7 3,095,388 + -0.5 3,095,388 + +0.2 3,095,651 - Psest_2901 0.73 -1.9 3,095,651 - Psest_2901 0.73 -1.1 3,095,704 + Psest_2901 0.88 -1.3 3,095,803 + -0.5 3,095,809 + +1.1 3,095,810 - +0.0 3,095,898 + -0.5 3,095,898 + -3.2 3,095,901 - +1.5 3,096,085 - Psest_2902 0.21 -0.4 3,096,085 - Psest_2902 0.21 -0.5 3,096,178 + Psest_2902 0.28 +2.9 3,096,178 + Psest_2902 0.28 +0.1 3,096,234 + Psest_2902 0.33 -0.4 3,096,234 + Psest_2902 0.33 -1.0 3,096,234 + Psest_2902 0.33 -2.1 3,096,235 - Psest_2902 0.33 +0.2 3,096,235 - Psest_2902 0.33 -1.3 3,096,371 - Psest_2902 0.43 -0.3 3,096,414 + Psest_2902 0.47 -1.1 3,096,471 + Psest_2902 0.51 +0.4 3,096,471 + Psest_2902 0.51 +0.5 3,096,471 + Psest_2902 0.51 -1.7 3,096,471 + Psest_2902 0.51 +1.6 3,096,472 - Psest_2902 0.51 +0.1 3,096,472 - Psest_2902 0.51 +0.9 3,096,472 - Psest_2902 0.51 +1.5 3,096,472 - Psest_2902 0.51 +0.9 3,096,472 - Psest_2902 0.51 -0.3 3,096,472 - Psest_2902 0.51 -0.9 3,096,570 + Psest_2902 0.59 -1.9 3,096,570 + Psest_2902 0.59 -2.1 3,096,570 + Psest_2902 0.59 -0.7 3,096,571 - Psest_2902 0.59 +1.1 3,096,571 - Psest_2902 0.59 -1.8 3,096,571 - Psest_2902 0.59 +2.0 3,096,765 + Psest_2902 0.74 +0.1 3,096,768 + Psest_2902 0.74 +0.6 3,096,768 + Psest_2902 0.74 -1.2 3,096,768 + Psest_2902 0.74 -0.2 3,096,769 - Psest_2902 0.74 +0.4 3,096,808 + Psest_2902 0.77 -0.9 3,096,809 - Psest_2902 0.77 +0.5 3,096,846 + Psest_2902 0.80 -0.7 3,096,847 - Psest_2902 0.80 -0.4 3,096,858 + Psest_2902 0.81 -0.7 3,096,858 + Psest_2902 0.81 +1.6 3,096,858 + Psest_2902 0.81 +1.6 3,096,858 + Psest_2902 0.81 -0.6 3,096,858 + Psest_2902 0.81 +0.0 3,096,858 + Psest_2902 0.81 +0.3 3,096,858 + Psest_2902 0.81 +0.8 3,096,858 + Psest_2902 0.81 +1.3 3,096,858 + Psest_2902 0.81 -0.7 3,096,859 - Psest_2902 0.81 +0.6 3,096,859 - Psest_2902 0.81 +0.2 3,096,859 - Psest_2902 0.81 +0.6 3,096,859 - Psest_2902 0.81 -0.8 3,096,859 - Psest_2902 0.81 -1.2 3,096,859 - Psest_2902 0.81 +1.2 3,096,859 - Psest_2902 0.81 -0.4 3,096,859 - Psest_2902 0.81 +1.1 3,096,916 + Psest_2902 0.86 +0.3 3,097,038 + +0.1 3,097,038 + +0.0 3,097,038 + +1.0 3,097,039 - +1.0 3,097,039 - +0.7 3,097,142 - +0.7 3,097,142 - -1.1 3,097,213 + Psest_2903 0.12 -0.5 3,097,226 + Psest_2903 0.13 -0.1 3,097,227 - Psest_2903 0.13 -0.8 3,097,227 - Psest_2903 0.13 -0.4 3,097,284 - Psest_2903 0.19 +0.2 3,097,562 + Psest_2903 0.47 +1.0 3,097,563 - Psest_2903 0.47 +0.8 3,098,090 + -0.9
Or see this region's nucleotide sequence