Experiment: Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2579 and Psest_2580 are separated by 69 nucleotides Psest_2580 and Psest_2581 are separated by 98 nucleotides Psest_2581 and Psest_2582 overlap by 17 nucleotides
Psest_2579: Psest_2579 - amidophosphoribosyltransferase, at 2,759,203 to 2,760,708
_2579
Psest_2580: Psest_2580 - Uncharacterized membrane protein, required for colicin V production, at 2,760,778 to 2,761,323
_2580
Psest_2581: Psest_2581 - Uncharacterized protein conserved in bacteria, at 2,761,422 to 2,762,054
_2581
Psest_2582: Psest_2582 - folylpolyglutamate synthase/dihydrofolate synthase, at 2,762,038 to 2,763,342
_2582
Position (kb)
2761
2762
2763 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2760.443 kb on + strand, within Psest_2579 at 2760.646 kb on - strand at 2760.656 kb on + strand at 2760.657 kb on - strand at 2760.657 kb on - strand at 2760.726 kb on + strand at 2760.726 kb on + strand at 2760.727 kb on - strand at 2760.727 kb on - strand at 2760.727 kb on - strand at 2760.727 kb on - strand at 2760.727 kb on - strand at 2760.730 kb on - strand at 2760.744 kb on + strand at 2760.895 kb on + strand, within Psest_2580 at 2760.895 kb on + strand, within Psest_2580 at 2760.895 kb on + strand, within Psest_2580 at 2760.896 kb on - strand, within Psest_2580 at 2760.896 kb on - strand, within Psest_2580 at 2760.896 kb on - strand, within Psest_2580 at 2760.896 kb on - strand, within Psest_2580 at 2760.896 kb on - strand, within Psest_2580 at 2760.896 kb on - strand, within Psest_2580 at 2760.896 kb on - strand, within Psest_2580 at 2760.896 kb on - strand, within Psest_2580 at 2760.896 kb on - strand, within Psest_2580 at 2760.896 kb on - strand, within Psest_2580 at 2761.122 kb on - strand, within Psest_2580 at 2761.122 kb on - strand, within Psest_2580 at 2761.122 kb on - strand, within Psest_2580 at 2761.544 kb on + strand, within Psest_2581 at 2761.545 kb on - strand, within Psest_2581 at 2761.564 kb on + strand, within Psest_2581 at 2761.565 kb on - strand, within Psest_2581 at 2761.565 kb on - strand, within Psest_2581 at 2761.573 kb on + strand, within Psest_2581
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.008 mg/ml remove 2,760,443 + Psest_2579 0.82 -0.8 2,760,646 - -1.6 2,760,656 + -0.6 2,760,657 - +0.4 2,760,657 - +1.4 2,760,726 + +0.6 2,760,726 + +1.4 2,760,727 - +0.2 2,760,727 - -1.3 2,760,727 - +0.6 2,760,727 - +1.0 2,760,727 - +0.2 2,760,730 - +0.5 2,760,744 + -1.2 2,760,895 + Psest_2580 0.21 -0.1 2,760,895 + Psest_2580 0.21 +0.3 2,760,895 + Psest_2580 0.21 +2.7 2,760,896 - Psest_2580 0.22 +0.4 2,760,896 - Psest_2580 0.22 +1.2 2,760,896 - Psest_2580 0.22 -0.3 2,760,896 - Psest_2580 0.22 +1.5 2,760,896 - Psest_2580 0.22 +1.9 2,760,896 - Psest_2580 0.22 -0.6 2,760,896 - Psest_2580 0.22 +0.0 2,760,896 - Psest_2580 0.22 +0.4 2,760,896 - Psest_2580 0.22 +3.3 2,760,896 - Psest_2580 0.22 -2.8 2,761,122 - Psest_2580 0.63 +1.8 2,761,122 - Psest_2580 0.63 -1.3 2,761,122 - Psest_2580 0.63 +1.3 2,761,544 + Psest_2581 0.19 -0.7 2,761,545 - Psest_2581 0.19 +0.7 2,761,564 + Psest_2581 0.22 -1.6 2,761,565 - Psest_2581 0.23 -1.0 2,761,565 - Psest_2581 0.23 -2.6 2,761,573 + Psest_2581 0.24 -2.2
Or see this region's nucleotide sequence