Experiment: Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2512 and Psest_2513 are separated by 120 nucleotides Psest_2513 and Psest_2514 are separated by 102 nucleotides Psest_2514 and Psest_2515 are separated by 147 nucleotides
Psest_2512: Psest_2512 - Kef-type K+ transport systems, predicted NAD-binding component, at 2,690,670 to 2,691,521
_2512
Psest_2513: Psest_2513 - Predicted membrane protein, at 2,691,642 to 2,692,055
_2513
Psest_2514: Psest_2514 - Predicted membrane protein, at 2,692,158 to 2,692,637
_2514
Psest_2515: Psest_2515 - cytochrome c oxidase, subunit II, at 2,692,785 to 2,693,675
_2515
Position (kb)
2692
2693 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2691.175 kb on - strand, within Psest_2512 at 2691.175 kb on - strand, within Psest_2512 at 2691.189 kb on + strand, within Psest_2512 at 2691.190 kb on - strand, within Psest_2512 at 2691.190 kb on - strand, within Psest_2512 at 2691.190 kb on - strand, within Psest_2512 at 2691.190 kb on - strand, within Psest_2512 at 2691.240 kb on + strand, within Psest_2512 at 2691.240 kb on + strand, within Psest_2512 at 2691.241 kb on - strand, within Psest_2512 at 2691.241 kb on - strand, within Psest_2512 at 2691.241 kb on - strand, within Psest_2512 at 2691.241 kb on - strand, within Psest_2512 at 2691.264 kb on - strand, within Psest_2512 at 2691.516 kb on - strand at 2691.524 kb on + strand at 2691.524 kb on + strand at 2691.525 kb on - strand at 2691.703 kb on - strand, within Psest_2513 at 2691.703 kb on - strand, within Psest_2513 at 2691.975 kb on + strand, within Psest_2513 at 2691.976 kb on - strand, within Psest_2513 at 2691.976 kb on - strand, within Psest_2513 at 2691.976 kb on - strand, within Psest_2513 at 2692.517 kb on - strand, within Psest_2514 at 2692.607 kb on + strand at 2692.607 kb on + strand at 2692.657 kb on + strand at 2692.657 kb on + strand at 2692.657 kb on + strand at 2692.657 kb on + strand at 2692.658 kb on - strand at 2692.840 kb on + strand at 2692.869 kb on + strand at 2692.869 kb on + strand at 2692.869 kb on + strand at 2692.870 kb on - strand at 2692.896 kb on + strand, within Psest_2515 at 2692.896 kb on + strand, within Psest_2515 at 2692.896 kb on + strand, within Psest_2515 at 2692.896 kb on + strand, within Psest_2515 at 2692.896 kb on + strand, within Psest_2515 at 2692.896 kb on + strand, within Psest_2515 at 2692.896 kb on + strand, within Psest_2515 at 2692.896 kb on + strand, within Psest_2515 at 2692.896 kb on + strand, within Psest_2515 at 2692.897 kb on - strand, within Psest_2515 at 2692.897 kb on - strand, within Psest_2515 at 2692.897 kb on - strand, within Psest_2515 at 2692.897 kb on - strand, within Psest_2515 at 2692.897 kb on - strand, within Psest_2515 at 2692.897 kb on - strand, within Psest_2515 at 2693.047 kb on + strand, within Psest_2515 at 2693.107 kb on + strand, within Psest_2515
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.008 mg/ml remove 2,691,175 - Psest_2512 0.59 +1.9 2,691,175 - Psest_2512 0.59 -0.8 2,691,189 + Psest_2512 0.61 +0.2 2,691,190 - Psest_2512 0.61 -1.2 2,691,190 - Psest_2512 0.61 -0.6 2,691,190 - Psest_2512 0.61 +0.0 2,691,190 - Psest_2512 0.61 -0.7 2,691,240 + Psest_2512 0.67 -0.8 2,691,240 + Psest_2512 0.67 +0.1 2,691,241 - Psest_2512 0.67 -0.8 2,691,241 - Psest_2512 0.67 -0.1 2,691,241 - Psest_2512 0.67 -1.4 2,691,241 - Psest_2512 0.67 -1.0 2,691,264 - Psest_2512 0.70 +0.6 2,691,516 - -1.7 2,691,524 + -1.7 2,691,524 + +2.3 2,691,525 - +1.1 2,691,703 - Psest_2513 0.15 -0.4 2,691,703 - Psest_2513 0.15 -1.1 2,691,975 + Psest_2513 0.80 -1.2 2,691,976 - Psest_2513 0.81 -1.3 2,691,976 - Psest_2513 0.81 -0.8 2,691,976 - Psest_2513 0.81 -1.0 2,692,517 - Psest_2514 0.75 -1.1 2,692,607 + -3.0 2,692,607 + -0.7 2,692,657 + -0.7 2,692,657 + +0.3 2,692,657 + -2.2 2,692,657 + -0.8 2,692,658 - +2.6 2,692,840 + -0.2 2,692,869 + -2.3 2,692,869 + -0.9 2,692,869 + -1.4 2,692,870 - -0.4 2,692,896 + Psest_2515 0.12 +0.3 2,692,896 + Psest_2515 0.12 +0.0 2,692,896 + Psest_2515 0.12 -0.4 2,692,896 + Psest_2515 0.12 -2.0 2,692,896 + Psest_2515 0.12 +1.5 2,692,896 + Psest_2515 0.12 -1.8 2,692,896 + Psest_2515 0.12 +0.3 2,692,896 + Psest_2515 0.12 +0.3 2,692,896 + Psest_2515 0.12 -2.1 2,692,897 - Psest_2515 0.13 +1.3 2,692,897 - Psest_2515 0.13 -1.5 2,692,897 - Psest_2515 0.13 -2.5 2,692,897 - Psest_2515 0.13 -1.0 2,692,897 - Psest_2515 0.13 -0.8 2,692,897 - Psest_2515 0.13 -1.7 2,693,047 + Psest_2515 0.29 -0.5 2,693,107 + Psest_2515 0.36 +0.4
Or see this region's nucleotide sequence