Experiment: Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2137 and Psest_2138 are separated by 284 nucleotides Psest_2138 and Psest_2139 overlap by 4 nucleotides
Psest_2137: Psest_2137 - Uncharacterized membrane protein, putative virulence factor, at 2,273,746 to 2,275,212
_2137
Psest_2138: Psest_2138 - RND family efflux transporter, MFP subunit, at 2,275,497 to 2,276,738
_2138
Psest_2139: Psest_2139 - Cation/multidrug efflux pump, at 2,276,735 to 2,279,815
_2139
Position (kb)
2275
2276
2277 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2275.350 kb on + strand at 2275.350 kb on + strand at 2275.350 kb on + strand at 2275.356 kb on + strand at 2275.356 kb on + strand at 2275.356 kb on + strand at 2275.356 kb on + strand at 2275.357 kb on - strand at 2275.357 kb on - strand at 2275.357 kb on - strand at 2275.357 kb on - strand at 2275.405 kb on + strand at 2275.405 kb on + strand at 2275.405 kb on + strand at 2275.405 kb on + strand at 2275.405 kb on + strand at 2275.405 kb on + strand at 2275.405 kb on + strand at 2275.405 kb on + strand at 2275.405 kb on + strand at 2275.405 kb on + strand at 2275.405 kb on + strand at 2275.405 kb on + strand at 2275.405 kb on + strand at 2275.405 kb on + strand at 2275.405 kb on + strand at 2275.405 kb on + strand at 2275.405 kb on + strand at 2275.405 kb on + strand at 2275.405 kb on + strand at 2275.405 kb on + strand at 2275.405 kb on + strand at 2275.405 kb on + strand at 2275.405 kb on + strand at 2275.405 kb on + strand at 2275.405 kb on + strand at 2275.405 kb on + strand at 2275.405 kb on + strand at 2275.405 kb on + strand at 2275.405 kb on + strand at 2275.405 kb on + strand at 2275.405 kb on + strand at 2275.405 kb on + strand at 2275.405 kb on + strand at 2275.406 kb on - strand at 2275.406 kb on - strand at 2275.406 kb on - strand at 2275.406 kb on - strand at 2275.406 kb on - strand at 2275.406 kb on - strand at 2275.406 kb on - strand at 2275.406 kb on - strand at 2275.406 kb on - strand at 2275.406 kb on - strand at 2275.406 kb on - strand at 2275.406 kb on - strand at 2275.406 kb on - strand at 2275.406 kb on - strand at 2275.406 kb on - strand at 2275.415 kb on + strand at 2275.462 kb on + strand at 2275.851 kb on + strand, within Psest_2138 at 2275.851 kb on + strand, within Psest_2138 at 2275.851 kb on + strand, within Psest_2138 at 2275.851 kb on + strand, within Psest_2138 at 2275.852 kb on - strand, within Psest_2138 at 2276.500 kb on - strand, within Psest_2138 at 2277.119 kb on + strand, within Psest_2139 at 2277.119 kb on + strand, within Psest_2139 at 2277.119 kb on + strand, within Psest_2139 at 2277.323 kb on + strand, within Psest_2139 at 2277.323 kb on + strand, within Psest_2139 at 2277.735 kb on + strand, within Psest_2139 at 2277.735 kb on + strand, within Psest_2139 at 2277.735 kb on + strand, within Psest_2139 at 2277.736 kb on - strand, within Psest_2139 at 2277.736 kb on - strand, within Psest_2139
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.008 mg/ml remove 2,275,350 + -3.0 2,275,350 + -1.0 2,275,350 + -3.1 2,275,356 + -0.6 2,275,356 + -2.1 2,275,356 + -0.0 2,275,356 + -2.9 2,275,357 - -0.6 2,275,357 - -1.4 2,275,357 - +1.0 2,275,357 - -1.2 2,275,405 + -1.7 2,275,405 + -1.2 2,275,405 + -0.0 2,275,405 + +0.1 2,275,405 + +2.6 2,275,405 + -0.1 2,275,405 + +0.3 2,275,405 + +1.3 2,275,405 + +0.9 2,275,405 + +0.7 2,275,405 + +0.9 2,275,405 + +1.1 2,275,405 + +0.6 2,275,405 + +1.2 2,275,405 + -0.1 2,275,405 + +1.8 2,275,405 + -0.7 2,275,405 + +0.8 2,275,405 + -0.6 2,275,405 + +0.4 2,275,405 + -0.8 2,275,405 + -0.0 2,275,405 + +1.0 2,275,405 + -2.1 2,275,405 + +0.6 2,275,405 + -0.1 2,275,405 + -0.3 2,275,405 + -0.7 2,275,405 + +0.8 2,275,405 + -0.0 2,275,405 + -1.9 2,275,405 + +0.4 2,275,405 + +0.2 2,275,406 - -0.6 2,275,406 - -1.6 2,275,406 - +1.7 2,275,406 - +1.3 2,275,406 - +0.5 2,275,406 - -1.3 2,275,406 - -0.4 2,275,406 - -1.5 2,275,406 - +0.1 2,275,406 - -0.4 2,275,406 - -0.3 2,275,406 - -1.9 2,275,406 - +0.4 2,275,406 - -0.9 2,275,406 - +0.6 2,275,415 + +2.7 2,275,462 + +2.1 2,275,851 + Psest_2138 0.29 -0.3 2,275,851 + Psest_2138 0.29 -0.3 2,275,851 + Psest_2138 0.29 -0.7 2,275,851 + Psest_2138 0.29 +0.1 2,275,852 - Psest_2138 0.29 -0.8 2,276,500 - Psest_2138 0.81 -0.9 2,277,119 + Psest_2139 0.12 +0.4 2,277,119 + Psest_2139 0.12 +0.2 2,277,119 + Psest_2139 0.12 +0.2 2,277,323 + Psest_2139 0.19 +0.5 2,277,323 + Psest_2139 0.19 +0.1 2,277,735 + Psest_2139 0.32 +0.6 2,277,735 + Psest_2139 0.32 -2.6 2,277,735 + Psest_2139 0.32 +0.2 2,277,736 - Psest_2139 0.32 -1.6 2,277,736 - Psest_2139 0.32 -0.6
Or see this region's nucleotide sequence