Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1988

Experiment: Carbenicillin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1986 and Psest_1987 overlap by 4 nucleotidesPsest_1987 and Psest_1988 are separated by 191 nucleotidesPsest_1988 and Psest_1989 are separated by 93 nucleotidesPsest_1989 and Psest_1990 are separated by 74 nucleotides Psest_1986: Psest_1986 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 2,102,568 to 2,104,811 _1986 Psest_1987: Psest_1987 - cytidylate kinase, at 2,104,808 to 2,105,497 _1987 Psest_1988: Psest_1988 - ribosomal protein S1, at 2,105,689 to 2,107,371 _1988 Psest_1989: Psest_1989 - Transcriptional regulators, at 2,107,465 to 2,107,908 _1989 Psest_1990: Psest_1990 - Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs, at 2,107,983 to 2,109,155 _1990 Position (kb) 2105 2106 2107 2108Strain fitness (log2 ratio) -1 0 1at 2107.555 kb on + strand, within Psest_1989at 2107.624 kb on - strand, within Psest_1989at 2107.624 kb on - strand, within Psest_1989at 2107.624 kb on - strand, within Psest_1989at 2107.624 kb on - strand, within Psest_1989at 2107.629 kb on + strand, within Psest_1989at 2107.630 kb on - strand, within Psest_1989at 2107.650 kb on + strand, within Psest_1989at 2107.651 kb on - strand, within Psest_1989at 2107.724 kb on + strand, within Psest_1989at 2107.724 kb on + strand, within Psest_1989at 2107.728 kb on + strand, within Psest_1989at 2107.728 kb on + strand, within Psest_1989at 2107.729 kb on - strand, within Psest_1989at 2107.729 kb on - strand, within Psest_1989at 2107.871 kb on - strandat 2107.958 kb on + strandat 2108.152 kb on - strand, within Psest_1990at 2108.331 kb on + strand, within Psest_1990

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbenicillin 0.008 mg/ml
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2,107,555 + Psest_1989 0.20 -0.2
2,107,624 - Psest_1989 0.36 -1.1
2,107,624 - Psest_1989 0.36 -1.4
2,107,624 - Psest_1989 0.36 +1.0
2,107,624 - Psest_1989 0.36 +0.0
2,107,629 + Psest_1989 0.37 -1.2
2,107,630 - Psest_1989 0.37 -1.6
2,107,650 + Psest_1989 0.42 -0.1
2,107,651 - Psest_1989 0.42 -1.4
2,107,724 + Psest_1989 0.58 +0.4
2,107,724 + Psest_1989 0.58 +0.0
2,107,728 + Psest_1989 0.59 -0.4
2,107,728 + Psest_1989 0.59 -0.7
2,107,729 - Psest_1989 0.59 +0.9
2,107,729 - Psest_1989 0.59 -1.3
2,107,871 - +0.4
2,107,958 + -0.7
2,108,152 - Psest_1990 0.14 -1.6
2,108,331 + Psest_1990 0.30 -0.2

Or see this region's nucleotide sequence