Experiment: Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1777 and Psest_1778 are separated by 213 nucleotides Psest_1778 and Psest_1779 are separated by 17 nucleotides Psest_1779 and Psest_1780 are separated by 27 nucleotides Psest_1780 and Psest_1781 are separated by 2 nucleotides Psest_1781 and Psest_1782 are separated by 182 nucleotides
Psest_1777: Psest_1777 - hypothetical protein, at 1,877,015 to 1,877,782
_1777
Psest_1778: Psest_1778 - tRNA_Glu_TTC, at 1,877,996 to 1,878,071
_1778
Psest_1779: Psest_1779 - tRNA_Gly_GCC, at 1,878,089 to 1,878,164
_1779
Psest_1780: Psest_1780 - hypothetical protein, at 1,878,192 to 1,878,371
_1780
Psest_1781: Psest_1781 - Uncharacterized protein conserved in bacteria, at 1,878,374 to 1,878,664
_1781
Psest_1782: Psest_1782 - Predicted transcriptional regulators, at 1,878,847 to 1,879,164
_1782
Position (kb)
1877
1878
1879 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1877.019 kb on + strand at 1877.172 kb on + strand, within Psest_1777 at 1877.172 kb on + strand, within Psest_1777 at 1877.173 kb on - strand, within Psest_1777 at 1877.283 kb on + strand, within Psest_1777 at 1877.459 kb on + strand, within Psest_1777 at 1877.459 kb on + strand, within Psest_1777 at 1877.460 kb on - strand, within Psest_1777 at 1877.460 kb on - strand, within Psest_1777 at 1877.718 kb on + strand at 1877.719 kb on - strand at 1877.753 kb on + strand at 1877.754 kb on - strand at 1877.770 kb on + strand at 1877.770 kb on + strand at 1877.770 kb on + strand at 1877.770 kb on + strand at 1877.770 kb on + strand at 1877.771 kb on - strand at 1877.771 kb on - strand at 1877.771 kb on - strand at 1877.771 kb on - strand at 1877.822 kb on + strand at 1877.822 kb on + strand at 1877.846 kb on - strand at 1877.890 kb on + strand at 1877.890 kb on + strand at 1877.891 kb on - strand at 1877.918 kb on + strand at 1877.918 kb on + strand at 1877.918 kb on + strand at 1877.918 kb on + strand at 1878.081 kb on + strand at 1878.081 kb on + strand at 1878.183 kb on + strand at 1878.381 kb on + strand at 1878.382 kb on - strand at 1878.382 kb on - strand at 1878.676 kb on + strand at 1878.677 kb on - strand at 1878.677 kb on - strand at 1878.677 kb on - strand at 1878.677 kb on - strand at 1878.677 kb on - strand at 1878.677 kb on - strand at 1878.729 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.008 mg/ml remove 1,877,019 + -1.9 1,877,172 + Psest_1777 0.20 +0.0 1,877,172 + Psest_1777 0.20 -0.9 1,877,173 - Psest_1777 0.21 -0.6 1,877,283 + Psest_1777 0.35 +1.0 1,877,459 + Psest_1777 0.58 -0.9 1,877,459 + Psest_1777 0.58 -1.3 1,877,460 - Psest_1777 0.58 +0.4 1,877,460 - Psest_1777 0.58 +0.9 1,877,718 + +0.2 1,877,719 - +0.5 1,877,753 + +0.0 1,877,754 - -1.0 1,877,770 + +0.9 1,877,770 + -0.5 1,877,770 + +0.9 1,877,770 + -1.6 1,877,770 + +0.3 1,877,771 - -0.5 1,877,771 - -1.1 1,877,771 - -0.7 1,877,771 - -0.2 1,877,822 + +0.9 1,877,822 + -0.7 1,877,846 - +0.0 1,877,890 + +1.9 1,877,890 + -0.8 1,877,891 - -0.3 1,877,918 + +0.6 1,877,918 + +0.1 1,877,918 + +0.6 1,877,918 + +1.2 1,878,081 + -0.2 1,878,081 + +0.7 1,878,183 + +0.2 1,878,381 + -0.9 1,878,382 - -1.0 1,878,382 - +1.6 1,878,676 + -0.7 1,878,677 - -0.2 1,878,677 - +1.7 1,878,677 - -0.5 1,878,677 - +0.9 1,878,677 - +1.0 1,878,677 - +0.3 1,878,729 - +2.3
Or see this region's nucleotide sequence