Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1778

Experiment: Carbenicillin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1777 and Psest_1778 are separated by 213 nucleotidesPsest_1778 and Psest_1779 are separated by 17 nucleotidesPsest_1779 and Psest_1780 are separated by 27 nucleotidesPsest_1780 and Psest_1781 are separated by 2 nucleotidesPsest_1781 and Psest_1782 are separated by 182 nucleotides Psest_1777: Psest_1777 - hypothetical protein, at 1,877,015 to 1,877,782 _1777 Psest_1778: Psest_1778 - tRNA_Glu_TTC, at 1,877,996 to 1,878,071 _1778 Psest_1779: Psest_1779 - tRNA_Gly_GCC, at 1,878,089 to 1,878,164 _1779 Psest_1780: Psest_1780 - hypothetical protein, at 1,878,192 to 1,878,371 _1780 Psest_1781: Psest_1781 - Uncharacterized protein conserved in bacteria, at 1,878,374 to 1,878,664 _1781 Psest_1782: Psest_1782 - Predicted transcriptional regulators, at 1,878,847 to 1,879,164 _1782 Position (kb) 1877 1878 1879Strain fitness (log2 ratio) -2 -1 0 1 2at 1877.019 kb on + strandat 1877.172 kb on + strand, within Psest_1777at 1877.172 kb on + strand, within Psest_1777at 1877.173 kb on - strand, within Psest_1777at 1877.283 kb on + strand, within Psest_1777at 1877.459 kb on + strand, within Psest_1777at 1877.459 kb on + strand, within Psest_1777at 1877.460 kb on - strand, within Psest_1777at 1877.460 kb on - strand, within Psest_1777at 1877.718 kb on + strandat 1877.719 kb on - strandat 1877.753 kb on + strandat 1877.754 kb on - strandat 1877.770 kb on + strandat 1877.770 kb on + strandat 1877.770 kb on + strandat 1877.770 kb on + strandat 1877.770 kb on + strandat 1877.771 kb on - strandat 1877.771 kb on - strandat 1877.771 kb on - strandat 1877.771 kb on - strandat 1877.822 kb on + strandat 1877.822 kb on + strandat 1877.846 kb on - strandat 1877.890 kb on + strandat 1877.890 kb on + strandat 1877.891 kb on - strandat 1877.918 kb on + strandat 1877.918 kb on + strandat 1877.918 kb on + strandat 1877.918 kb on + strandat 1878.081 kb on + strandat 1878.081 kb on + strandat 1878.183 kb on + strandat 1878.381 kb on + strandat 1878.382 kb on - strandat 1878.382 kb on - strandat 1878.676 kb on + strandat 1878.677 kb on - strandat 1878.677 kb on - strandat 1878.677 kb on - strandat 1878.677 kb on - strandat 1878.677 kb on - strandat 1878.677 kb on - strandat 1878.729 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbenicillin 0.008 mg/ml
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1,877,019 + -1.9
1,877,172 + Psest_1777 0.20 +0.0
1,877,172 + Psest_1777 0.20 -0.9
1,877,173 - Psest_1777 0.21 -0.6
1,877,283 + Psest_1777 0.35 +1.0
1,877,459 + Psest_1777 0.58 -0.9
1,877,459 + Psest_1777 0.58 -1.3
1,877,460 - Psest_1777 0.58 +0.4
1,877,460 - Psest_1777 0.58 +0.9
1,877,718 + +0.2
1,877,719 - +0.5
1,877,753 + +0.0
1,877,754 - -1.0
1,877,770 + +0.9
1,877,770 + -0.5
1,877,770 + +0.9
1,877,770 + -1.6
1,877,770 + +0.3
1,877,771 - -0.5
1,877,771 - -1.1
1,877,771 - -0.7
1,877,771 - -0.2
1,877,822 + +0.9
1,877,822 + -0.7
1,877,846 - +0.0
1,877,890 + +1.9
1,877,890 + -0.8
1,877,891 - -0.3
1,877,918 + +0.6
1,877,918 + +0.1
1,877,918 + +0.6
1,877,918 + +1.2
1,878,081 + -0.2
1,878,081 + +0.7
1,878,183 + +0.2
1,878,381 + -0.9
1,878,382 - -1.0
1,878,382 - +1.6
1,878,676 + -0.7
1,878,677 - -0.2
1,878,677 - +1.7
1,878,677 - -0.5
1,878,677 - +0.9
1,878,677 - +1.0
1,878,677 - +0.3
1,878,729 - +2.3

Or see this region's nucleotide sequence