Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS26660

Experiment: Ferulic Acid (C) 1.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS26655 and PFLU_RS26660 are separated by 15 nucleotidesPFLU_RS26660 and PFLU_RS26665 are separated by 9 nucleotidesPFLU_RS26665 and PFLU_RS26670 are separated by 69 nucleotides PFLU_RS26655: PFLU_RS26655 - penicillin-binding protein 2, at 5,956,957 to 5,958,855 _RS26655 PFLU_RS26660: PFLU_RS26660 - 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH, at 5,958,871 to 5,959,338 _RS26660 PFLU_RS26665: PFLU_RS26665 - ribosome silencing factor, at 5,959,348 to 5,959,842 _RS26665 PFLU_RS26670: PFLU_RS26670 - nicotinate-nucleotide adenylyltransferase, at 5,959,912 to 5,960,556 _RS26670 Position (kb) 5958 5959 5960Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 5958.873 kb on - strandat 5958.873 kb on - strandat 5958.873 kb on - strandat 5958.873 kb on - strandat 5958.873 kb on - strandat 5958.882 kb on - strandat 5958.882 kb on - strandat 5958.914 kb on + strandat 5958.914 kb on + strandat 5958.915 kb on - strandat 5958.915 kb on - strandat 5958.915 kb on - strandat 5958.915 kb on - strandat 5958.915 kb on - strandat 5958.915 kb on - strandat 5958.940 kb on + strand, within PFLU_RS26660at 5958.940 kb on + strand, within PFLU_RS26660at 5958.941 kb on - strand, within PFLU_RS26660at 5958.941 kb on - strand, within PFLU_RS26660at 5959.225 kb on + strand, within PFLU_RS26660at 5959.226 kb on - strand, within PFLU_RS26660at 5959.272 kb on - strand, within PFLU_RS26660at 5959.272 kb on - strand, within PFLU_RS26660at 5959.272 kb on - strand, within PFLU_RS26660at 5959.350 kb on - strandat 5959.350 kb on - strandat 5959.464 kb on - strand, within PFLU_RS26665at 5959.845 kb on - strandat 5959.845 kb on - strandat 5959.845 kb on - strandat 5959.845 kb on - strandat 5959.863 kb on - strandat 5959.863 kb on - strandat 5959.863 kb on - strandat 5959.863 kb on - strandat 5959.863 kb on - strandat 5959.863 kb on - strandat 5959.863 kb on - strandat 5959.863 kb on - strandat 5959.863 kb on - strandat 5959.863 kb on - strandat 5959.882 kb on - strandat 5959.893 kb on + strandat 5959.893 kb on + strandat 5959.893 kb on + strandat 5959.893 kb on + strandat 5959.894 kb on - strandat 5959.894 kb on - strandat 5959.894 kb on - strandat 5959.894 kb on - strandat 5959.894 kb on - strandat 5959.894 kb on - strandat 5959.894 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ferulic Acid (C) 1.5 mM
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5,958,873 - +2.1
5,958,873 - +1.6
5,958,873 - +1.6
5,958,873 - -0.4
5,958,873 - +1.0
5,958,882 - +1.3
5,958,882 - +1.0
5,958,914 + +3.2
5,958,914 + +4.9
5,958,915 - +1.9
5,958,915 - +1.6
5,958,915 - +0.8
5,958,915 - +0.6
5,958,915 - -1.5
5,958,915 - +1.1
5,958,940 + PFLU_RS26660 0.15 +3.1
5,958,940 + PFLU_RS26660 0.15 +3.4
5,958,941 - PFLU_RS26660 0.15 +1.0
5,958,941 - PFLU_RS26660 0.15 +0.7
5,959,225 + PFLU_RS26660 0.76 +2.7
5,959,226 - PFLU_RS26660 0.76 +0.8
5,959,272 - PFLU_RS26660 0.86 +1.6
5,959,272 - PFLU_RS26660 0.86 -0.9
5,959,272 - PFLU_RS26660 0.86 -1.4
5,959,350 - +1.9
5,959,350 - +1.0
5,959,464 - PFLU_RS26665 0.23 +3.1
5,959,845 - +1.1
5,959,845 - +3.1
5,959,845 - +0.8
5,959,845 - +1.8
5,959,863 - +2.0
5,959,863 - +0.9
5,959,863 - +0.6
5,959,863 - +0.8
5,959,863 - -0.4
5,959,863 - +1.9
5,959,863 - +2.3
5,959,863 - +1.2
5,959,863 - +2.6
5,959,863 - +2.0
5,959,882 - +0.6
5,959,893 + +1.1
5,959,893 + +4.1
5,959,893 + +3.1
5,959,893 + +3.1
5,959,894 - +0.6
5,959,894 - +0.9
5,959,894 - +1.4
5,959,894 - -1.3
5,959,894 - +1.4
5,959,894 - +1.5
5,959,894 - +3.6

Or see this region's nucleotide sequence