Experiment: Carbenicillin 0.0065 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0782 and Psest_0783 are separated by 107 nucleotides Psest_0783 and Psest_0784 are separated by 126 nucleotides
Psest_0782: Psest_0782 - Transcriptional regulator of aromatic amino acids metabolism, at 850,651 to 852,210
_0782
Psest_0783: Psest_0783 - PAS domain S-box, at 852,318 to 856,490
_0783
Psest_0784: Psest_0784 - L-serine dehydratase, iron-sulfur-dependent, single chain form, at 856,617 to 857,993
_0784
Position (kb) 852
853
854
855
856
857 Strain fitness (log2 ratio) -2
-1
0
1
2 at 851.665 kb on + strand, within Psest_0782 at 851.665 kb on + strand, within Psest_0782 at 851.665 kb on + strand, within Psest_0782 at 851.666 kb on - strand, within Psest_0782 at 851.666 kb on - strand, within Psest_0782 at 851.666 kb on - strand, within Psest_0782 at 851.746 kb on + strand, within Psest_0782 at 851.776 kb on - strand, within Psest_0782 at 852.793 kb on + strand, within Psest_0783 at 852.793 kb on + strand, within Psest_0783 at 853.091 kb on - strand, within Psest_0783 at 853.091 kb on - strand, within Psest_0783 at 853.091 kb on - strand, within Psest_0783 at 853.298 kb on + strand, within Psest_0783 at 853.298 kb on + strand, within Psest_0783 at 853.298 kb on + strand, within Psest_0783 at 853.299 kb on - strand, within Psest_0783 at 853.540 kb on - strand, within Psest_0783 at 853.681 kb on + strand, within Psest_0783 at 853.681 kb on + strand, within Psest_0783 at 853.681 kb on + strand, within Psest_0783 at 853.682 kb on - strand, within Psest_0783 at 853.682 kb on - strand, within Psest_0783 at 853.682 kb on - strand, within Psest_0783 at 853.682 kb on - strand, within Psest_0783 at 853.682 kb on - strand, within Psest_0783 at 853.795 kb on + strand, within Psest_0783 at 853.908 kb on - strand, within Psest_0783 at 853.948 kb on + strand, within Psest_0783 at 853.948 kb on + strand, within Psest_0783 at 853.948 kb on + strand, within Psest_0783 at 853.948 kb on + strand, within Psest_0783 at 854.028 kb on + strand, within Psest_0783 at 854.028 kb on + strand, within Psest_0783 at 854.028 kb on + strand, within Psest_0783 at 854.029 kb on - strand, within Psest_0783 at 854.029 kb on - strand, within Psest_0783 at 854.132 kb on + strand, within Psest_0783 at 854.133 kb on - strand, within Psest_0783 at 854.524 kb on + strand, within Psest_0783 at 854.524 kb on + strand, within Psest_0783 at 854.525 kb on - strand, within Psest_0783 at 854.575 kb on + strand, within Psest_0783 at 854.575 kb on + strand, within Psest_0783 at 854.575 kb on + strand, within Psest_0783 at 854.575 kb on + strand, within Psest_0783 at 854.575 kb on + strand, within Psest_0783 at 854.576 kb on - strand, within Psest_0783 at 854.576 kb on - strand, within Psest_0783 at 854.576 kb on - strand, within Psest_0783 at 854.576 kb on - strand, within Psest_0783 at 854.576 kb on - strand, within Psest_0783 at 854.576 kb on - strand, within Psest_0783 at 854.576 kb on - strand, within Psest_0783 at 854.576 kb on - strand, within Psest_0783 at 854.576 kb on - strand, within Psest_0783 at 854.576 kb on - strand, within Psest_0783 at 854.576 kb on - strand, within Psest_0783 at 854.647 kb on + strand, within Psest_0783 at 854.647 kb on + strand, within Psest_0783 at 854.648 kb on - strand, within Psest_0783 at 854.725 kb on + strand, within Psest_0783 at 854.725 kb on + strand, within Psest_0783 at 854.726 kb on - strand, within Psest_0783 at 854.804 kb on - strand, within Psest_0783 at 854.962 kb on + strand, within Psest_0783 at 854.962 kb on + strand, within Psest_0783 at 854.962 kb on + strand, within Psest_0783 at 854.962 kb on + strand, within Psest_0783 at 854.963 kb on - strand, within Psest_0783 at 854.963 kb on - strand, within Psest_0783 at 854.979 kb on - strand, within Psest_0783 at 855.106 kb on + strand, within Psest_0783 at 855.106 kb on + strand, within Psest_0783 at 855.106 kb on + strand, within Psest_0783 at 855.106 kb on + strand, within Psest_0783 at 855.106 kb on + strand, within Psest_0783 at 855.106 kb on + strand, within Psest_0783 at 855.106 kb on + strand, within Psest_0783 at 855.106 kb on + strand, within Psest_0783 at 855.107 kb on - strand, within Psest_0783 at 855.107 kb on - strand, within Psest_0783 at 855.107 kb on - strand, within Psest_0783 at 855.107 kb on - strand, within Psest_0783 at 855.107 kb on - strand, within Psest_0783 at 855.107 kb on - strand, within Psest_0783 at 855.107 kb on - strand, within Psest_0783 at 855.241 kb on + strand, within Psest_0783 at 855.412 kb on + strand, within Psest_0783 at 855.412 kb on + strand, within Psest_0783 at 855.619 kb on + strand, within Psest_0783 at 855.620 kb on - strand, within Psest_0783 at 855.620 kb on - strand, within Psest_0783 at 855.620 kb on - strand, within Psest_0783 at 855.620 kb on - strand, within Psest_0783 at 855.692 kb on - strand, within Psest_0783 at 855.692 kb on - strand, within Psest_0783 at 855.692 kb on - strand, within Psest_0783 at 855.774 kb on - strand, within Psest_0783 at 856.065 kb on + strand, within Psest_0783 at 856.065 kb on + strand, within Psest_0783 at 856.065 kb on + strand, within Psest_0783 at 856.066 kb on - strand, within Psest_0783 at 856.085 kb on + strand at 856.171 kb on + strand at 856.171 kb on + strand at 856.213 kb on + strand at 856.213 kb on + strand at 856.213 kb on + strand at 856.213 kb on + strand at 856.213 kb on + strand at 856.213 kb on + strand at 856.213 kb on + strand at 856.213 kb on + strand at 856.213 kb on + strand at 856.213 kb on + strand at 856.213 kb on + strand at 856.213 kb on + strand at 856.213 kb on + strand at 856.214 kb on - strand at 856.214 kb on - strand at 856.214 kb on - strand at 856.214 kb on - strand at 856.214 kb on - strand at 856.214 kb on - strand at 856.214 kb on - strand at 856.214 kb on - strand at 856.214 kb on - strand at 856.581 kb on - strand at 856.581 kb on - strand at 856.581 kb on - strand at 856.601 kb on + strand at 856.666 kb on + strand at 856.666 kb on + strand at 856.667 kb on - strand at 856.667 kb on - strand at 856.667 kb on - strand at 856.667 kb on - strand at 856.667 kb on - strand at 857.005 kb on + strand, within Psest_0784 at 857.006 kb on - strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.084 kb on - strand, within Psest_0784 at 857.084 kb on - strand, within Psest_0784 at 857.084 kb on - strand, within Psest_0784 at 857.084 kb on - strand, within Psest_0784 at 857.084 kb on - strand, within Psest_0784 at 857.084 kb on - strand, within Psest_0784 at 857.084 kb on - strand, within Psest_0784 at 857.084 kb on - strand, within Psest_0784 at 857.084 kb on - strand, within Psest_0784 at 857.084 kb on - strand, within Psest_0784 at 857.084 kb on - strand, within Psest_0784 at 857.084 kb on - strand, within Psest_0784 at 857.084 kb on - strand, within Psest_0784 at 857.084 kb on - strand, within Psest_0784 at 857.084 kb on - strand, within Psest_0784 at 857.084 kb on - strand, within Psest_0784 at 857.084 kb on - strand, within Psest_0784 at 857.084 kb on - strand, within Psest_0784 at 857.086 kb on + strand, within Psest_0784 at 857.086 kb on + strand, within Psest_0784 at 857.087 kb on - strand, within Psest_0784 at 857.087 kb on - strand, within Psest_0784 at 857.087 kb on - strand, within Psest_0784 at 857.087 kb on - strand, within Psest_0784 at 857.182 kb on + strand, within Psest_0784 at 857.183 kb on - strand, within Psest_0784
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.0065 mg/ml remove 851,665 + Psest_0782 0.65 -1.5 851,665 + Psest_0782 0.65 -1.5 851,665 + Psest_0782 0.65 -0.0 851,666 - Psest_0782 0.65 -0.5 851,666 - Psest_0782 0.65 -2.4 851,666 - Psest_0782 0.65 +0.9 851,746 + Psest_0782 0.70 +2.0 851,776 - Psest_0782 0.72 +0.1 852,793 + Psest_0783 0.11 -0.3 852,793 + Psest_0783 0.11 -0.4 853,091 - Psest_0783 0.19 -0.6 853,091 - Psest_0783 0.19 +0.1 853,091 - Psest_0783 0.19 +0.3 853,298 + Psest_0783 0.23 -0.6 853,298 + Psest_0783 0.23 +1.2 853,298 + Psest_0783 0.23 -0.5 853,299 - Psest_0783 0.24 -1.8 853,540 - Psest_0783 0.29 +2.4 853,681 + Psest_0783 0.33 +0.0 853,681 + Psest_0783 0.33 +1.1 853,681 + Psest_0783 0.33 +0.7 853,682 - Psest_0783 0.33 -1.9 853,682 - Psest_0783 0.33 -1.3 853,682 - Psest_0783 0.33 -1.8 853,682 - Psest_0783 0.33 -0.3 853,682 - Psest_0783 0.33 -0.4 853,795 + Psest_0783 0.35 -0.0 853,908 - Psest_0783 0.38 -1.5 853,948 + Psest_0783 0.39 +0.5 853,948 + Psest_0783 0.39 +2.2 853,948 + Psest_0783 0.39 +0.3 853,948 + Psest_0783 0.39 -0.2 854,028 + Psest_0783 0.41 +2.3 854,028 + Psest_0783 0.41 +1.2 854,028 + Psest_0783 0.41 -1.1 854,029 - Psest_0783 0.41 -0.8 854,029 - Psest_0783 0.41 -0.2 854,132 + Psest_0783 0.43 -1.0 854,133 - Psest_0783 0.43 -1.3 854,524 + Psest_0783 0.53 -1.8 854,524 + Psest_0783 0.53 +0.7 854,525 - Psest_0783 0.53 +0.9 854,575 + Psest_0783 0.54 +0.3 854,575 + Psest_0783 0.54 -0.7 854,575 + Psest_0783 0.54 -1.5 854,575 + Psest_0783 0.54 +0.2 854,575 + Psest_0783 0.54 +0.2 854,576 - Psest_0783 0.54 -1.6 854,576 - Psest_0783 0.54 +1.0 854,576 - Psest_0783 0.54 -0.6 854,576 - Psest_0783 0.54 -2.0 854,576 - Psest_0783 0.54 -0.1 854,576 - Psest_0783 0.54 +0.7 854,576 - Psest_0783 0.54 -1.0 854,576 - Psest_0783 0.54 -0.1 854,576 - Psest_0783 0.54 +1.1 854,576 - Psest_0783 0.54 -1.0 854,576 - Psest_0783 0.54 -0.5 854,647 + Psest_0783 0.56 -0.7 854,647 + Psest_0783 0.56 -1.5 854,648 - Psest_0783 0.56 -0.4 854,725 + Psest_0783 0.58 -1.7 854,725 + Psest_0783 0.58 -1.0 854,726 - Psest_0783 0.58 -0.5 854,804 - Psest_0783 0.60 -1.5 854,962 + Psest_0783 0.63 +0.3 854,962 + Psest_0783 0.63 +0.1 854,962 + Psest_0783 0.63 -1.4 854,962 + Psest_0783 0.63 +0.8 854,963 - Psest_0783 0.63 -1.1 854,963 - Psest_0783 0.63 -1.3 854,979 - Psest_0783 0.64 +1.4 855,106 + Psest_0783 0.67 -1.0 855,106 + Psest_0783 0.67 +0.7 855,106 + Psest_0783 0.67 -0.4 855,106 + Psest_0783 0.67 +0.4 855,106 + Psest_0783 0.67 -0.5 855,106 + Psest_0783 0.67 -1.0 855,106 + Psest_0783 0.67 +2.4 855,106 + Psest_0783 0.67 -1.5 855,107 - Psest_0783 0.67 -0.4 855,107 - Psest_0783 0.67 +0.5 855,107 - Psest_0783 0.67 -1.2 855,107 - Psest_0783 0.67 -1.2 855,107 - Psest_0783 0.67 +0.6 855,107 - Psest_0783 0.67 +0.5 855,107 - Psest_0783 0.67 -2.2 855,241 + Psest_0783 0.70 -0.3 855,412 + Psest_0783 0.74 +2.0 855,412 + Psest_0783 0.74 +0.2 855,619 + Psest_0783 0.79 -0.6 855,620 - Psest_0783 0.79 -2.2 855,620 - Psest_0783 0.79 -0.3 855,620 - Psest_0783 0.79 -1.9 855,620 - Psest_0783 0.79 -0.4 855,692 - Psest_0783 0.81 -0.0 855,692 - Psest_0783 0.81 -0.4 855,692 - Psest_0783 0.81 +0.4 855,774 - Psest_0783 0.83 -0.7 856,065 + Psest_0783 0.90 +1.4 856,065 + Psest_0783 0.90 +0.7 856,065 + Psest_0783 0.90 -0.6 856,066 - Psest_0783 0.90 -0.1 856,085 + -1.7 856,171 + -0.1 856,171 + -0.3 856,213 + -1.7 856,213 + +1.5 856,213 + -0.8 856,213 + -0.7 856,213 + -0.2 856,213 + -0.3 856,213 + -0.4 856,213 + -0.4 856,213 + +0.3 856,213 + +2.0 856,213 + -0.0 856,213 + +1.0 856,213 + -2.2 856,214 - -2.5 856,214 - +1.0 856,214 - +0.7 856,214 - -0.6 856,214 - -0.6 856,214 - -0.2 856,214 - +0.9 856,214 - -0.1 856,214 - -0.7 856,581 - -0.7 856,581 - -1.2 856,581 - +0.9 856,601 + -0.2 856,666 + -0.8 856,666 + +0.4 856,667 - +0.5 856,667 - +0.2 856,667 - +0.2 856,667 - -2.3 856,667 - +0.5 857,005 + Psest_0784 0.28 +1.6 857,006 - Psest_0784 0.28 -0.4 857,083 + Psest_0784 0.34 -0.8 857,083 + Psest_0784 0.34 +0.3 857,083 + Psest_0784 0.34 -1.3 857,083 + Psest_0784 0.34 +0.8 857,083 + Psest_0784 0.34 +0.4 857,083 + Psest_0784 0.34 -0.0 857,083 + Psest_0784 0.34 -1.4 857,083 + Psest_0784 0.34 -2.3 857,083 + Psest_0784 0.34 +0.2 857,083 + Psest_0784 0.34 -1.3 857,083 + Psest_0784 0.34 +1.7 857,083 + Psest_0784 0.34 -0.8 857,083 + Psest_0784 0.34 -1.8 857,083 + Psest_0784 0.34 -0.7 857,083 + Psest_0784 0.34 -0.4 857,083 + Psest_0784 0.34 +1.0 857,083 + Psest_0784 0.34 -0.7 857,083 + Psest_0784 0.34 -1.0 857,083 + Psest_0784 0.34 +0.8 857,083 + Psest_0784 0.34 +0.3 857,083 + Psest_0784 0.34 -0.4 857,084 - Psest_0784 0.34 -1.8 857,084 - Psest_0784 0.34 -1.4 857,084 - Psest_0784 0.34 -0.6 857,084 - Psest_0784 0.34 -1.9 857,084 - Psest_0784 0.34 +0.6 857,084 - Psest_0784 0.34 -0.2 857,084 - Psest_0784 0.34 -0.9 857,084 - Psest_0784 0.34 -2.2 857,084 - Psest_0784 0.34 -2.3 857,084 - Psest_0784 0.34 -0.6 857,084 - Psest_0784 0.34 -1.2 857,084 - Psest_0784 0.34 -1.2 857,084 - Psest_0784 0.34 -0.9 857,084 - Psest_0784 0.34 -1.1 857,084 - Psest_0784 0.34 -1.9 857,084 - Psest_0784 0.34 +1.9 857,084 - Psest_0784 0.34 +0.9 857,084 - Psest_0784 0.34 +0.3 857,086 + Psest_0784 0.34 -0.7 857,086 + Psest_0784 0.34 -1.2 857,087 - Psest_0784 0.34 +0.5 857,087 - Psest_0784 0.34 +1.2 857,087 - Psest_0784 0.34 -1.4 857,087 - Psest_0784 0.34 -0.1 857,182 + Psest_0784 0.41 -1.6 857,183 - Psest_0784 0.41 -1.2
Or see this region's nucleotide sequence