Experiment: Carbenicillin 0.0065 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2680 and Psest_2681 are separated by 13 nucleotides Psest_2681 and Psest_2682 are separated by 148 nucleotides Psest_2682 and Psest_2684 are separated by 802 nucleotides Psest_2684 and Psest_2685 are separated by 8 nucleotides
Psest_2680: Psest_2680 - transcriptional regulator, BolA protein family, at 2,869,871 to 2,870,167
_2680
Psest_2681: Psest_2681 - Uncharacterized protein conserved in bacteria, at 2,870,181 to 2,870,687
_2681
Psest_2682: Psest_2682 - fumarate hydratase, class II, at 2,870,836 to 2,872,230
_2682
Psest_2684: Psest_2684 - 5S rRNA, at 2,873,033 to 2,873,148
_2684
Psest_2685: Psest_2685 - hypothetical protein, at 2,873,157 to 2,873,204
_2685
Position (kb)
2870
2871
2872
2873 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2869.872 kb on + strand at 2869.873 kb on - strand at 2869.876 kb on + strand at 2869.876 kb on + strand at 2869.876 kb on + strand at 2869.877 kb on - strand at 2869.941 kb on + strand, within Psest_2680 at 2869.941 kb on + strand, within Psest_2680 at 2869.942 kb on - strand, within Psest_2680 at 2869.942 kb on - strand, within Psest_2680 at 2869.942 kb on - strand, within Psest_2680 at 2869.995 kb on + strand, within Psest_2680 at 2870.061 kb on + strand, within Psest_2680 at 2870.061 kb on + strand, within Psest_2680 at 2870.061 kb on + strand, within Psest_2680 at 2870.061 kb on + strand, within Psest_2680 at 2870.061 kb on + strand, within Psest_2680 at 2870.062 kb on - strand, within Psest_2680 at 2870.062 kb on - strand, within Psest_2680 at 2870.062 kb on - strand, within Psest_2680 at 2870.062 kb on - strand, within Psest_2680 at 2870.169 kb on + strand at 2870.169 kb on + strand at 2870.169 kb on + strand at 2870.169 kb on + strand at 2870.170 kb on - strand at 2870.170 kb on - strand at 2870.336 kb on - strand, within Psest_2681 at 2870.384 kb on - strand, within Psest_2681 at 2870.384 kb on - strand, within Psest_2681 at 2870.442 kb on - strand, within Psest_2681 at 2870.710 kb on + strand at 2870.710 kb on + strand at 2870.710 kb on + strand at 2870.710 kb on + strand at 2870.710 kb on + strand at 2870.710 kb on + strand at 2870.711 kb on - strand at 2870.711 kb on - strand at 2870.711 kb on - strand at 2870.711 kb on - strand at 2870.711 kb on - strand at 2870.711 kb on - strand at 2870.711 kb on - strand at 2870.711 kb on - strand at 2870.711 kb on - strand at 2870.711 kb on - strand at 2870.711 kb on - strand at 2870.714 kb on + strand at 2870.715 kb on - strand at 2870.815 kb on - strand at 2870.844 kb on + strand at 2870.876 kb on + strand at 2870.890 kb on + strand at 2870.963 kb on + strand at 2870.964 kb on - strand at 2870.964 kb on - strand at 2870.964 kb on - strand at 2870.964 kb on - strand at 2870.964 kb on - strand at 2871.047 kb on + strand, within Psest_2682 at 2871.048 kb on - strand, within Psest_2682 at 2871.138 kb on + strand, within Psest_2682 at 2871.139 kb on - strand, within Psest_2682 at 2871.139 kb on - strand, within Psest_2682 at 2871.393 kb on + strand, within Psest_2682 at 2871.394 kb on - strand, within Psest_2682 at 2871.605 kb on + strand, within Psest_2682 at 2871.606 kb on - strand, within Psest_2682 at 2871.653 kb on + strand, within Psest_2682 at 2871.861 kb on + strand, within Psest_2682 at 2872.002 kb on - strand, within Psest_2682 at 2872.002 kb on - strand, within Psest_2682 at 2872.228 kb on + strand at 2872.228 kb on + strand at 2872.234 kb on + strand at 2872.234 kb on + strand at 2872.234 kb on + strand at 2872.235 kb on - strand at 2872.274 kb on + strand at 2872.274 kb on + strand at 2872.336 kb on + strand at 2872.359 kb on + strand at 2872.359 kb on + strand at 2872.430 kb on + strand at 2872.455 kb on + strand at 2872.456 kb on - strand at 2872.456 kb on - strand at 2872.457 kb on + strand at 2872.458 kb on - strand at 2872.458 kb on - strand at 2872.458 kb on - strand at 2872.522 kb on + strand at 2872.523 kb on - strand at 2872.602 kb on + strand at 2872.841 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.0065 mg/ml remove 2,869,872 + -0.6 2,869,873 - +2.4 2,869,876 + +0.8 2,869,876 + -0.9 2,869,876 + +1.3 2,869,877 - +0.7 2,869,941 + Psest_2680 0.24 -1.4 2,869,941 + Psest_2680 0.24 +0.2 2,869,942 - Psest_2680 0.24 +0.4 2,869,942 - Psest_2680 0.24 -0.9 2,869,942 - Psest_2680 0.24 -0.3 2,869,995 + Psest_2680 0.42 +0.5 2,870,061 + Psest_2680 0.64 -0.1 2,870,061 + Psest_2680 0.64 +0.5 2,870,061 + Psest_2680 0.64 -0.2 2,870,061 + Psest_2680 0.64 -0.0 2,870,061 + Psest_2680 0.64 +1.6 2,870,062 - Psest_2680 0.64 -0.2 2,870,062 - Psest_2680 0.64 +0.2 2,870,062 - Psest_2680 0.64 -0.1 2,870,062 - Psest_2680 0.64 +2.1 2,870,169 + +0.4 2,870,169 + -0.2 2,870,169 + -0.0 2,870,169 + -0.2 2,870,170 - +1.0 2,870,170 - -1.2 2,870,336 - Psest_2681 0.31 +1.0 2,870,384 - Psest_2681 0.40 +0.1 2,870,384 - Psest_2681 0.40 -0.5 2,870,442 - Psest_2681 0.51 +1.6 2,870,710 + -1.2 2,870,710 + -1.6 2,870,710 + -1.4 2,870,710 + +1.2 2,870,710 + +0.3 2,870,710 + +0.7 2,870,711 - +0.9 2,870,711 - -1.1 2,870,711 - +0.3 2,870,711 - -0.1 2,870,711 - -1.6 2,870,711 - +1.7 2,870,711 - -0.6 2,870,711 - -0.7 2,870,711 - +2.1 2,870,711 - -0.5 2,870,711 - +0.4 2,870,714 + +0.6 2,870,715 - +0.3 2,870,815 - +1.1 2,870,844 + -1.4 2,870,876 + -0.3 2,870,890 + +0.2 2,870,963 + -1.1 2,870,964 - -1.7 2,870,964 - +1.0 2,870,964 - +0.1 2,870,964 - -1.4 2,870,964 - -0.6 2,871,047 + Psest_2682 0.15 -0.3 2,871,048 - Psest_2682 0.15 -1.6 2,871,138 + Psest_2682 0.22 +1.4 2,871,139 - Psest_2682 0.22 +1.9 2,871,139 - Psest_2682 0.22 +0.9 2,871,393 + Psest_2682 0.40 -1.1 2,871,394 - Psest_2682 0.40 -0.0 2,871,605 + Psest_2682 0.55 +1.9 2,871,606 - Psest_2682 0.55 +2.5 2,871,653 + Psest_2682 0.59 -1.1 2,871,861 + Psest_2682 0.73 +2.2 2,872,002 - Psest_2682 0.84 +1.4 2,872,002 - Psest_2682 0.84 +1.5 2,872,228 + +0.6 2,872,228 + -0.3 2,872,234 + +2.4 2,872,234 + +0.1 2,872,234 + -2.1 2,872,235 - +0.7 2,872,274 + -0.8 2,872,274 + +0.1 2,872,336 + +1.5 2,872,359 + -1.4 2,872,359 + +0.2 2,872,430 + -0.4 2,872,455 + +0.9 2,872,456 - +0.6 2,872,456 - +0.6 2,872,457 + +0.0 2,872,458 - +0.4 2,872,458 - +1.0 2,872,458 - +2.7 2,872,522 + -0.8 2,872,523 - -1.3 2,872,602 + -0.2 2,872,841 - -0.4
Or see this region's nucleotide sequence