Experiment: Carbenicillin 0.0065 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2575 and Psest_2576 are separated by 257 nucleotides Psest_2576 and Psest_2577 are separated by 3 nucleotides Psest_2577 and Psest_2578 are separated by 61 nucleotides
Psest_2575: Psest_2575 - tRNA_Val_CAC, at 2,754,967 to 2,755,042
_2575
Psest_2576: Psest_2576 - hypothetical protein, at 2,755,300 to 2,755,944
_2576
Psest_2577: Psest_2577 - general secretion pathway protein D, at 2,755,948 to 2,757,882
_2577
Psest_2578: Psest_2578 - O-succinylhomoserine sulfhydrylase, at 2,757,944 to 2,759,155
_2578
Position (kb)
2755
2756
2757
2758 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2755.068 kb on - strand at 2755.068 kb on - strand at 2755.085 kb on - strand at 2755.223 kb on - strand at 2755.293 kb on - strand at 2755.327 kb on + strand at 2755.384 kb on + strand, within Psest_2576 at 2755.384 kb on + strand, within Psest_2576 at 2755.385 kb on - strand, within Psest_2576 at 2755.385 kb on - strand, within Psest_2576 at 2755.385 kb on - strand, within Psest_2576 at 2755.385 kb on - strand, within Psest_2576 at 2755.443 kb on + strand, within Psest_2576 at 2755.444 kb on - strand, within Psest_2576 at 2755.444 kb on - strand, within Psest_2576 at 2755.448 kb on - strand, within Psest_2576 at 2755.448 kb on - strand, within Psest_2576 at 2755.448 kb on - strand, within Psest_2576 at 2755.500 kb on - strand, within Psest_2576 at 2755.690 kb on + strand, within Psest_2576 at 2755.691 kb on - strand, within Psest_2576 at 2755.723 kb on - strand, within Psest_2576 at 2755.765 kb on + strand, within Psest_2576 at 2755.765 kb on + strand, within Psest_2576 at 2755.765 kb on + strand, within Psest_2576 at 2755.765 kb on + strand, within Psest_2576 at 2755.765 kb on + strand, within Psest_2576 at 2755.766 kb on - strand, within Psest_2576 at 2755.766 kb on - strand, within Psest_2576 at 2755.766 kb on - strand, within Psest_2576 at 2755.766 kb on - strand, within Psest_2576 at 2755.766 kb on - strand, within Psest_2576 at 2755.974 kb on - strand at 2755.990 kb on - strand at 2756.210 kb on + strand, within Psest_2577 at 2756.210 kb on + strand, within Psest_2577 at 2756.211 kb on - strand, within Psest_2577 at 2756.212 kb on + strand, within Psest_2577 at 2756.213 kb on - strand, within Psest_2577 at 2756.481 kb on + strand, within Psest_2577 at 2756.812 kb on - strand, within Psest_2577 at 2756.853 kb on + strand, within Psest_2577 at 2756.854 kb on - strand, within Psest_2577 at 2756.854 kb on - strand, within Psest_2577 at 2756.969 kb on + strand, within Psest_2577 at 2756.970 kb on - strand, within Psest_2577 at 2757.067 kb on - strand, within Psest_2577 at 2757.334 kb on + strand, within Psest_2577 at 2757.335 kb on - strand, within Psest_2577 at 2757.335 kb on - strand, within Psest_2577 at 2757.420 kb on + strand, within Psest_2577 at 2757.420 kb on + strand, within Psest_2577 at 2757.420 kb on + strand, within Psest_2577 at 2757.420 kb on + strand, within Psest_2577 at 2757.420 kb on + strand, within Psest_2577 at 2757.420 kb on + strand, within Psest_2577 at 2757.421 kb on + strand, within Psest_2577 at 2757.421 kb on - strand, within Psest_2577 at 2757.421 kb on - strand, within Psest_2577 at 2757.544 kb on - strand, within Psest_2577 at 2757.763 kb on + strand at 2757.763 kb on + strand at 2757.763 kb on + strand at 2757.764 kb on - strand at 2757.773 kb on + strand at 2757.774 kb on - strand at 2757.774 kb on - strand at 2757.872 kb on + strand at 2757.872 kb on + strand at 2757.873 kb on - strand at 2757.873 kb on - strand at 2758.094 kb on - strand, within Psest_2578 at 2758.266 kb on + strand, within Psest_2578 at 2758.267 kb on - strand, within Psest_2578 at 2758.267 kb on - strand, within Psest_2578 at 2758.269 kb on + strand, within Psest_2578 at 2758.343 kb on - strand, within Psest_2578 at 2758.497 kb on + strand, within Psest_2578 at 2758.497 kb on + strand, within Psest_2578 at 2758.497 kb on + strand, within Psest_2578 at 2758.498 kb on - strand, within Psest_2578 at 2758.498 kb on - strand, within Psest_2578 at 2758.498 kb on - strand, within Psest_2578 at 2758.498 kb on - strand, within Psest_2578 at 2758.574 kb on - strand, within Psest_2578 at 2758.681 kb on + strand, within Psest_2578 at 2758.682 kb on - strand, within Psest_2578 at 2758.682 kb on - strand, within Psest_2578 at 2758.762 kb on - strand, within Psest_2578 at 2758.762 kb on - strand, within Psest_2578 at 2758.762 kb on - strand, within Psest_2578 at 2758.812 kb on - strand, within Psest_2578
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.0065 mg/ml remove 2,755,068 - -0.4 2,755,068 - +0.7 2,755,085 - +0.4 2,755,223 - -0.2 2,755,293 - +1.0 2,755,327 + -0.2 2,755,384 + Psest_2576 0.13 +1.4 2,755,384 + Psest_2576 0.13 -1.0 2,755,385 - Psest_2576 0.13 +0.5 2,755,385 - Psest_2576 0.13 +1.0 2,755,385 - Psest_2576 0.13 +0.8 2,755,385 - Psest_2576 0.13 -0.3 2,755,443 + Psest_2576 0.22 -1.2 2,755,444 - Psest_2576 0.22 -0.9 2,755,444 - Psest_2576 0.22 +0.1 2,755,448 - Psest_2576 0.23 -0.1 2,755,448 - Psest_2576 0.23 +0.5 2,755,448 - Psest_2576 0.23 +0.6 2,755,500 - Psest_2576 0.31 -0.5 2,755,690 + Psest_2576 0.60 -0.3 2,755,691 - Psest_2576 0.61 -0.4 2,755,723 - Psest_2576 0.66 -0.2 2,755,765 + Psest_2576 0.72 +0.5 2,755,765 + Psest_2576 0.72 +0.5 2,755,765 + Psest_2576 0.72 -0.1 2,755,765 + Psest_2576 0.72 +0.5 2,755,765 + Psest_2576 0.72 +0.6 2,755,766 - Psest_2576 0.72 +1.7 2,755,766 - Psest_2576 0.72 +0.6 2,755,766 - Psest_2576 0.72 -0.3 2,755,766 - Psest_2576 0.72 +1.5 2,755,766 - Psest_2576 0.72 -1.1 2,755,974 - +2.1 2,755,990 - +0.0 2,756,210 + Psest_2577 0.14 -0.2 2,756,210 + Psest_2577 0.14 +0.4 2,756,211 - Psest_2577 0.14 +0.6 2,756,212 + Psest_2577 0.14 -1.4 2,756,213 - Psest_2577 0.14 -0.5 2,756,481 + Psest_2577 0.28 +0.2 2,756,812 - Psest_2577 0.45 -0.5 2,756,853 + Psest_2577 0.47 -2.2 2,756,854 - Psest_2577 0.47 -1.4 2,756,854 - Psest_2577 0.47 -1.8 2,756,969 + Psest_2577 0.53 -0.4 2,756,970 - Psest_2577 0.53 -1.0 2,757,067 - Psest_2577 0.58 -0.9 2,757,334 + Psest_2577 0.72 -1.3 2,757,335 - Psest_2577 0.72 -2.0 2,757,335 - Psest_2577 0.72 -2.4 2,757,420 + Psest_2577 0.76 -1.3 2,757,420 + Psest_2577 0.76 -2.7 2,757,420 + Psest_2577 0.76 -1.3 2,757,420 + Psest_2577 0.76 +0.2 2,757,420 + Psest_2577 0.76 +0.1 2,757,420 + Psest_2577 0.76 -0.9 2,757,421 + Psest_2577 0.76 +0.6 2,757,421 - Psest_2577 0.76 -0.3 2,757,421 - Psest_2577 0.76 +0.3 2,757,544 - Psest_2577 0.82 -0.6 2,757,763 + -0.1 2,757,763 + +1.4 2,757,763 + -0.6 2,757,764 - +1.1 2,757,773 + -1.2 2,757,774 - -0.6 2,757,774 - -1.1 2,757,872 + +0.8 2,757,872 + +0.2 2,757,873 - +0.0 2,757,873 - +1.0 2,758,094 - Psest_2578 0.12 +0.6 2,758,266 + Psest_2578 0.27 -0.3 2,758,267 - Psest_2578 0.27 +0.1 2,758,267 - Psest_2578 0.27 -1.4 2,758,269 + Psest_2578 0.27 +1.7 2,758,343 - Psest_2578 0.33 -0.6 2,758,497 + Psest_2578 0.46 -1.6 2,758,497 + Psest_2578 0.46 -0.8 2,758,497 + Psest_2578 0.46 +0.5 2,758,498 - Psest_2578 0.46 -0.7 2,758,498 - Psest_2578 0.46 -0.1 2,758,498 - Psest_2578 0.46 -0.3 2,758,498 - Psest_2578 0.46 +1.7 2,758,574 - Psest_2578 0.52 -1.2 2,758,681 + Psest_2578 0.61 -0.6 2,758,682 - Psest_2578 0.61 +0.1 2,758,682 - Psest_2578 0.61 +0.0 2,758,762 - Psest_2578 0.67 -0.0 2,758,762 - Psest_2578 0.67 +3.0 2,758,762 - Psest_2578 0.67 -0.6 2,758,812 - Psest_2578 0.72 +0.0
Or see this region's nucleotide sequence