Experiment: Carbenicillin 0.0065 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1900 and Psest_1901 are separated by 10 nucleotides Psest_1901 and Psest_1902 are separated by 80 nucleotides Psest_1902 and Psest_1903 are separated by 145 nucleotides
Psest_1900: Psest_1900 - Maltoporin (phage lambda and maltose receptor), at 2,010,335 to 2,011,558
_1900
Psest_1901: Psest_1901 - hypothetical protein, at 2,011,569 to 2,012,348
_1901
Psest_1902: Psest_1902 - hypothetical protein, at 2,012,429 to 2,013,388
_1902
Psest_1903: Psest_1903 - chorismate synthase, at 2,013,534 to 2,014,625
_1903
Position (kb)
2012
2013
2014 Strain fitness (log2 ratio)
-2
-1
0
1 at 2011.536 kb on + strand at 2011.537 kb on - strand at 2011.542 kb on + strand at 2011.542 kb on + strand at 2011.543 kb on - strand at 2011.543 kb on - strand at 2011.543 kb on - strand at 2011.543 kb on - strand at 2011.556 kb on + strand at 2011.556 kb on + strand at 2011.955 kb on - strand, within Psest_1901 at 2012.097 kb on + strand, within Psest_1901 at 2012.097 kb on + strand, within Psest_1901 at 2012.097 kb on + strand, within Psest_1901 at 2012.098 kb on - strand, within Psest_1901 at 2012.098 kb on - strand, within Psest_1901 at 2012.098 kb on - strand, within Psest_1901 at 2012.098 kb on - strand, within Psest_1901 at 2012.520 kb on + strand at 2012.520 kb on + strand at 2012.733 kb on + strand, within Psest_1902 at 2012.734 kb on - strand, within Psest_1902 at 2012.876 kb on + strand, within Psest_1902 at 2012.877 kb on - strand, within Psest_1902 at 2012.877 kb on - strand, within Psest_1902 at 2013.049 kb on - strand, within Psest_1902 at 2013.203 kb on - strand, within Psest_1902 at 2013.288 kb on - strand, within Psest_1902 at 2013.490 kb on - strand at 2013.490 kb on - strand at 2013.491 kb on + strand at 2013.491 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.0065 mg/ml remove 2,011,536 + +0.9 2,011,537 - +0.4 2,011,542 + +1.4 2,011,542 + +1.1 2,011,543 - +0.8 2,011,543 - -0.6 2,011,543 - +0.6 2,011,543 - -0.8 2,011,556 + -0.6 2,011,556 + +0.7 2,011,955 - Psest_1901 0.49 +1.1 2,012,097 + Psest_1901 0.68 -0.5 2,012,097 + Psest_1901 0.68 -0.1 2,012,097 + Psest_1901 0.68 -0.6 2,012,098 - Psest_1901 0.68 +0.4 2,012,098 - Psest_1901 0.68 +0.0 2,012,098 - Psest_1901 0.68 +0.4 2,012,098 - Psest_1901 0.68 +0.3 2,012,520 + +0.4 2,012,520 + +0.3 2,012,733 + Psest_1902 0.32 +0.7 2,012,734 - Psest_1902 0.32 -0.6 2,012,876 + Psest_1902 0.47 -2.4 2,012,877 - Psest_1902 0.47 -1.6 2,012,877 - Psest_1902 0.47 -1.2 2,013,049 - Psest_1902 0.65 +0.3 2,013,203 - Psest_1902 0.81 -1.9 2,013,288 - Psest_1902 0.89 -1.0 2,013,490 - -1.7 2,013,490 - +1.7 2,013,491 + -1.0 2,013,491 + +0.0
Or see this region's nucleotide sequence