Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2507

Experiment: PEG (Day 3) - Cage1;Mouse2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PEG (Day 3) - Cage1;Mouse2
3,130,787	-				+2.0
3,130,787	-				-0.9
3,130,799	+				-1.4
3,130,801	+				+0.2
3,130,806	+				-1.1
3,130,807	-				-2.7
3,130,856	+				-2.5
3,130,884	-				-1.8
3,130,884	-				+0.6
3,130,887	+				-1.0
3,130,895	+				-0.1
3,130,897	+				-0.7
3,130,898	-				+0.0
3,130,898	-				-2.4
3,130,898	-				-1.6
3,130,902	+				-1.2
3,130,918	-				-1.0
3,130,982	+				-0.4
3,130,982	+				+0.0
3,130,983	-				+0.2
3,130,984	-				-1.3
3,130,990	-				-2.7
3,131,011	+				+1.6
3,131,084	+				-0.1
3,131,116	-				+2.0
3,131,123	-				-0.8
3,131,196	-				-1.6
3,131,196	-				-2.2
3,131,254	+				+0.1
3,131,276	+				+0.6
3,131,307	+				-3.2
3,131,308	-				-2.0
3,131,308	-				-1.4
3,131,310	-				-0.7
3,131,333	+		BT2506	0.13	-0.2
3,131,333	+		BT2506	0.13	-1.2
3,131,334	-		BT2506	0.14	+1.6
3,131,340	-		BT2506	0.15	-0.2
3,131,345	+		BT2506	0.16	-1.1
3,131,346	-		BT2506	0.16	-1.2
3,131,382	-		BT2506	0.23	-0.7
3,131,411	+		BT2506	0.29	-2.4
3,131,411	+		BT2506	0.29	-1.5
3,131,414	+		BT2506	0.29	+0.4
3,131,415	-		BT2506	0.29	-0.4
3,131,416	-		BT2506	0.29	+1.0
3,131,431	-		BT2506	0.32	+0.1
3,131,447	+		BT2506	0.35	+0.0
3,131,447	+		BT2506	0.35	+0.0
3,131,447	+		BT2506	0.35	+0.4
3,131,475	-		BT2506	0.41	-1.1
3,131,492	+		BT2506	0.44	-2.7
3,131,495	+		BT2506	0.45	+0.1
3,131,538	-		BT2506	0.53	+1.0
3,131,574	-		BT2506	0.60	-1.8
3,131,574	-		BT2506	0.60	+1.4
3,131,578	-		BT2506	0.61	-0.4
3,131,587	-		BT2506	0.62	-1.0
3,131,592	-		BT2506	0.63	-0.6
3,131,601	+		BT2506	0.65	+0.4
3,131,603	+		BT2506	0.66	+0.6
3,131,603	+		BT2506	0.66	+1.2
3,131,603	+		BT2506	0.66	-2.2
3,131,604	-		BT2506	0.66	+0.0
3,131,614	+		BT2506	0.68	-0.8
3,131,615	-		BT2506	0.68	+1.0
3,131,658	-		BT2506	0.76	+2.3
3,131,660	-		BT2506	0.76	-1.7
3,131,660	-		BT2506	0.76	-1.4
3,131,664	+		BT2506	0.77	-1.1
3,131,681	+		BT2506	0.81	+0.9
3,131,700	-		BT2506	0.84	+0.5
3,131,702	-		BT2506	0.85	-0.6
3,131,703	+		BT2506	0.85	-2.5
3,131,703	+		BT2506	0.85	+0.0
3,131,704	-		BT2506	0.85	-0.9
3,131,704	-		BT2506	0.85	-1.1
3,131,704	-		BT2506	0.85	-0.8
3,131,751	-				-0.3
3,131,763	+				-1.3
3,131,769	-				+0.3
3,131,772	-				-1.4
3,131,872	+		BT2507	0.12	+0.0
3,131,873	-		BT2507	0.12	-0.4
3,131,873	-		BT2507	0.12	+1.4
3,131,930	-		BT2507	0.20	-0.9
3,131,966	-		BT2507	0.25	-1.9
3,131,968	-		BT2507	0.26	+0.0
3,131,968	-		BT2507	0.26	-0.1
3,131,975	-		BT2507	0.27	-0.9
3,131,986	+		BT2507	0.28	-3.1
3,131,998	-		BT2507	0.30	+0.3
3,132,000	-		BT2507	0.30	-1.6
3,132,009	+		BT2507	0.31	-0.4
3,132,009	+		BT2507	0.31	+2.8
3,132,010	-		BT2507	0.32	-1.3
3,132,010	-		BT2507	0.32	-1.0
3,132,047	-		BT2507	0.37	-0.4
3,132,048	+		BT2507	0.37	+1.0
3,132,048	+		BT2507	0.37	-2.7
3,132,078	+		BT2507	0.41	-0.7
3,132,079	-		BT2507	0.41	-0.7
3,132,113	+		BT2507	0.46	-2.3
3,132,113	+		BT2507	0.46	-1.9
3,132,119	-		BT2507	0.47	-1.4
3,132,182	+		BT2507	0.56	-1.2
3,132,185	-		BT2507	0.56	-2.4
3,132,222	+		BT2507	0.61	-0.2
3,132,223	-		BT2507	0.61	-1.6
3,132,225	+		BT2507	0.62	-1.4
3,132,225	+		BT2507	0.62	-1.6
3,132,225	+		BT2507	0.62	-0.7
3,132,226	-		BT2507	0.62	-2.1
3,132,226	-		BT2507	0.62	+0.6
3,132,226	-		BT2507	0.62	-2.1
3,132,308	-		BT2507	0.73	-1.4
3,132,322	-		BT2507	0.75	-2.0
3,132,350	-		BT2507	0.79	-3.7
3,132,364	+		BT2507	0.81	-0.6
3,132,386	-		BT2507	0.84	+1.6
3,132,386	-		BT2507	0.84	-3.3
3,132,394	+		BT2507	0.86	-0.7
3,132,397	-		BT2507	0.86	-0.7
3,132,474	+				-1.2
3,132,508	-				-1.6
3,132,520	+				-1.9
3,132,520	+				-2.1
3,132,581	-		BT2508	0.17	-1.2
3,132,634	-		BT2508	0.26	-2.5
3,132,635	+		BT2508	0.26	-1.6
3,132,655	-		BT2508	0.29	+1.9
3,132,655	-		BT2508	0.29	-1.6
3,132,657	-		BT2508	0.29	-1.3
3,132,657	-		BT2508	0.29	-0.7
3,132,678	+		BT2508	0.33	-1.3
3,132,678	+		BT2508	0.33	-2.3
3,132,679	-		BT2508	0.33	-1.0
3,132,680	+		BT2508	0.33	-0.9
3,132,756	+		BT2508	0.46	-1.6
3,132,759	+		BT2508	0.46	-2.6
3,132,778	+		BT2508	0.49	-1.6
3,132,779	-		BT2508	0.49	-1.6
3,132,811	+		BT2508	0.55	-0.9
3,132,812	-		BT2508	0.55	-1.4
3,132,812	-		BT2508	0.55	+0.0
3,132,843	+		BT2508	0.60	-1.4
3,132,843	+		BT2508	0.60	+1.2
3,132,849	+		BT2508	0.61	-0.3
3,132,863	+		BT2508	0.63	-0.8
3,132,863	+		BT2508	0.63	-2.0
3,132,867	+		BT2508	0.64	-1.0
3,132,867	+		BT2508	0.64	-1.1
3,132,867	+		BT2508	0.64	+0.7
3,132,880	+		BT2508	0.66	-0.3
3,132,907	+		BT2508	0.70	-0.7
3,132,907	+		BT2508	0.70	-0.8
3,132,981	+		BT2508	0.83	-1.0
3,132,982	-		BT2508	0.83	-0.4
3,132,983	+		BT2508	0.83	-0.7
3,132,983	+		BT2508	0.83	-1.3
3,132,984	-		BT2508	0.83	-0.8
3,132,984	-		BT2508	0.83	-2.3
3,132,986	-		BT2508	0.83	-2.0
3,133,048	+				-1.3
3,133,049	-				-1.4
3,133,051	+				-1.3
3,133,051	+				-1.1
3,133,052	-				-0.6
3,133,054	-				-1.4
3,133,056	-				+1.6
3,133,059	+				-1.5
3,133,060	-				+2.1
3,133,060	-				-0.6
3,133,072	-				-0.1
3,133,072	-				-1.2
3,133,089	+				+1.0
3,133,146	+				-1.3
3,133,147	-				+1.2
3,133,158	-				+0.0
3,133,200	+				-0.7
3,133,303	-		BT2509	0.20	-2.1
3,133,333	+		BT2509	0.24	-1.7
3,133,334	-		BT2509	0.24	-1.0
3,133,336	+		BT2509	0.24	-0.6
3,133,341	-		BT2509	0.24	+0.6
3,133,412	+		BT2509	0.32	-0.4
3,133,413	-		BT2509	0.32	-2.4
3,133,413	-		BT2509	0.32	-1.0
3,133,434	+		BT2509	0.35	-1.2
3,133,434	+		BT2509	0.35	-0.6
3,133,478	-		BT2509	0.40	-1.3