Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2152

Experiment: Aluminum chloride 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2151 and Psest_2152 are separated by 10 nucleotidesPsest_2152 and Psest_2153 overlap by 4 nucleotidesPsest_2153 and Psest_2154 are separated by 22 nucleotides Psest_2151: Psest_2151 - formate dehydrogenase, alpha subunit, proteobacterial-type, at 2,297,209 to 2,300,274 _2151 Psest_2152: Psest_2152 - formate dehydrogenase, beta subunit, Fe-S containing, at 2,300,285 to 2,301,223 _2152 Psest_2153: Psest_2153 - formate dehydrogenase, gamma subunit, at 2,301,220 to 2,301,924 _2153 Psest_2154: Psest_2154 - formate dehydrogenase accessory protein FdhE, at 2,301,947 to 2,302,894 _2154 Position (kb) 2300 2301 2302Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2299.306 kb on + strand, within Psest_2151at 2299.306 kb on + strand, within Psest_2151at 2299.306 kb on + strand, within Psest_2151at 2299.307 kb on - strand, within Psest_2151at 2299.429 kb on + strand, within Psest_2151at 2299.430 kb on - strand, within Psest_2151at 2299.430 kb on - strand, within Psest_2151at 2300.270 kb on + strandat 2300.271 kb on - strandat 2300.271 kb on - strandat 2300.271 kb on - strandat 2300.272 kb on + strandat 2300.272 kb on + strandat 2300.273 kb on - strandat 2300.273 kb on - strandat 2300.273 kb on - strandat 2300.273 kb on - strandat 2300.336 kb on - strandat 2300.486 kb on + strand, within Psest_2152at 2300.486 kb on + strand, within Psest_2152at 2300.486 kb on + strand, within Psest_2152at 2300.486 kb on + strand, within Psest_2152at 2300.486 kb on + strand, within Psest_2152at 2300.486 kb on + strand, within Psest_2152at 2300.487 kb on - strand, within Psest_2152at 2300.487 kb on - strand, within Psest_2152at 2300.487 kb on - strand, within Psest_2152at 2300.655 kb on - strand, within Psest_2152at 2300.741 kb on - strand, within Psest_2152at 2300.766 kb on - strand, within Psest_2152at 2300.766 kb on - strand, within Psest_2152at 2300.876 kb on + strand, within Psest_2152at 2300.877 kb on - strand, within Psest_2152at 2300.877 kb on - strand, within Psest_2152at 2300.933 kb on + strand, within Psest_2152at 2300.933 kb on + strand, within Psest_2152at 2300.933 kb on + strand, within Psest_2152at 2300.934 kb on - strand, within Psest_2152at 2300.934 kb on - strand, within Psest_2152at 2300.934 kb on - strand, within Psest_2152at 2300.969 kb on + strand, within Psest_2152at 2300.969 kb on + strand, within Psest_2152at 2300.969 kb on + strand, within Psest_2152at 2300.969 kb on + strand, within Psest_2152at 2300.970 kb on - strand, within Psest_2152at 2300.970 kb on - strand, within Psest_2152at 2301.002 kb on + strand, within Psest_2152at 2301.003 kb on - strand, within Psest_2152at 2301.003 kb on - strand, within Psest_2152at 2301.119 kb on + strand, within Psest_2152at 2301.119 kb on + strand, within Psest_2152at 2301.119 kb on + strand, within Psest_2152at 2301.119 kb on + strand, within Psest_2152at 2301.120 kb on - strand, within Psest_2152at 2301.120 kb on - strand, within Psest_2152at 2301.120 kb on - strand, within Psest_2152at 2301.120 kb on - strand, within Psest_2152at 2301.120 kb on - strand, within Psest_2152at 2301.236 kb on + strandat 2301.236 kb on + strandat 2301.236 kb on + strandat 2301.237 kb on - strandat 2301.237 kb on - strandat 2301.237 kb on - strandat 2301.337 kb on + strand, within Psest_2153at 2301.337 kb on + strand, within Psest_2153at 2301.338 kb on - strand, within Psest_2153at 2301.403 kb on + strand, within Psest_2153at 2301.403 kb on + strand, within Psest_2153at 2301.403 kb on + strand, within Psest_2153at 2301.577 kb on + strand, within Psest_2153at 2301.577 kb on + strand, within Psest_2153at 2301.739 kb on + strand, within Psest_2153at 2301.830 kb on - strand, within Psest_2153at 2302.147 kb on - strand, within Psest_2154at 2302.147 kb on - strand, within Psest_2154

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 0.3 mM
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2,299,306 + Psest_2151 0.68 +0.8
2,299,306 + Psest_2151 0.68 +1.9
2,299,306 + Psest_2151 0.68 +0.7
2,299,307 - Psest_2151 0.68 +0.3
2,299,429 + Psest_2151 0.72 +2.3
2,299,430 - Psest_2151 0.72 +0.5
2,299,430 - Psest_2151 0.72 +0.1
2,300,270 + +0.1
2,300,271 - -1.0
2,300,271 - +1.4
2,300,271 - -1.0
2,300,272 + +0.2
2,300,272 + -1.7
2,300,273 - -1.2
2,300,273 - +0.2
2,300,273 - +2.1
2,300,273 - +2.8
2,300,336 - +1.0
2,300,486 + Psest_2152 0.21 -1.9
2,300,486 + Psest_2152 0.21 -0.3
2,300,486 + Psest_2152 0.21 +0.1
2,300,486 + Psest_2152 0.21 -0.5
2,300,486 + Psest_2152 0.21 -1.2
2,300,486 + Psest_2152 0.21 -0.2
2,300,487 - Psest_2152 0.22 -0.3
2,300,487 - Psest_2152 0.22 +0.1
2,300,487 - Psest_2152 0.22 +0.9
2,300,655 - Psest_2152 0.39 +0.1
2,300,741 - Psest_2152 0.49 +0.4
2,300,766 - Psest_2152 0.51 -1.7
2,300,766 - Psest_2152 0.51 -0.5
2,300,876 + Psest_2152 0.63 -1.5
2,300,877 - Psest_2152 0.63 -0.1
2,300,877 - Psest_2152 0.63 -0.6
2,300,933 + Psest_2152 0.69 +0.5
2,300,933 + Psest_2152 0.69 -0.9
2,300,933 + Psest_2152 0.69 -0.5
2,300,934 - Psest_2152 0.69 +0.3
2,300,934 - Psest_2152 0.69 +1.3
2,300,934 - Psest_2152 0.69 -0.8
2,300,969 + Psest_2152 0.73 -0.1
2,300,969 + Psest_2152 0.73 -1.2
2,300,969 + Psest_2152 0.73 -0.2
2,300,969 + Psest_2152 0.73 +0.3
2,300,970 - Psest_2152 0.73 -1.5
2,300,970 - Psest_2152 0.73 -0.5
2,301,002 + Psest_2152 0.76 +0.2
2,301,003 - Psest_2152 0.76 -0.3
2,301,003 - Psest_2152 0.76 -1.6
2,301,119 + Psest_2152 0.89 +0.1
2,301,119 + Psest_2152 0.89 -0.6
2,301,119 + Psest_2152 0.89 +1.4
2,301,119 + Psest_2152 0.89 -0.4
2,301,120 - Psest_2152 0.89 +0.6
2,301,120 - Psest_2152 0.89 -0.9
2,301,120 - Psest_2152 0.89 +0.8
2,301,120 - Psest_2152 0.89 -0.8
2,301,120 - Psest_2152 0.89 -1.7
2,301,236 + -0.4
2,301,236 + -2.4
2,301,236 + -0.8
2,301,237 - -0.9
2,301,237 - -3.2
2,301,237 - +0.7
2,301,337 + Psest_2153 0.17 -1.2
2,301,337 + Psest_2153 0.17 -1.2
2,301,338 - Psest_2153 0.17 +0.5
2,301,403 + Psest_2153 0.26 -0.9
2,301,403 + Psest_2153 0.26 -0.2
2,301,403 + Psest_2153 0.26 -1.6
2,301,577 + Psest_2153 0.51 -0.8
2,301,577 + Psest_2153 0.51 -3.6
2,301,739 + Psest_2153 0.74 +0.1
2,301,830 - Psest_2153 0.87 +1.5
2,302,147 - Psest_2154 0.21 +0.7
2,302,147 - Psest_2154 0.21 -0.1

Or see this region's nucleotide sequence