Experiment: Zinc 0.12 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0201 and Psest_0202 are separated by 131 nucleotides Psest_0202 and Psest_0203 overlap by 20 nucleotides
Psest_0201: Psest_0201 - PAS domain S-box, at 199,180 to 200,760
_0201
Psest_0202: Psest_0202 - diguanylate cyclase (GGDEF) domain, at 200,892 to 202,823
_0202
Psest_0203: Psest_0203 - Signal transduction histidine kinase, at 202,804 to 204,204
_0203
Position (kb) 200
201
202
203 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 200.181 kb on + strand, within Psest_0201 at 200.182 kb on - strand, within Psest_0201 at 200.182 kb on - strand, within Psest_0201 at 200.243 kb on + strand, within Psest_0201 at 200.395 kb on - strand, within Psest_0201 at 200.640 kb on + strand at 200.829 kb on + strand at 200.829 kb on + strand at 200.829 kb on + strand at 200.829 kb on + strand at 200.829 kb on + strand at 200.833 kb on + strand at 200.833 kb on + strand at 201.024 kb on + strand at 201.024 kb on + strand at 201.024 kb on + strand at 201.024 kb on + strand at 201.024 kb on + strand at 201.024 kb on + strand at 201.024 kb on + strand at 201.024 kb on + strand at 201.025 kb on - strand at 201.147 kb on + strand, within Psest_0202 at 201.147 kb on + strand, within Psest_0202 at 201.147 kb on + strand, within Psest_0202 at 201.148 kb on - strand, within Psest_0202 at 201.148 kb on - strand, within Psest_0202 at 201.148 kb on - strand, within Psest_0202 at 201.178 kb on - strand, within Psest_0202 at 201.357 kb on + strand, within Psest_0202 at 201.357 kb on + strand, within Psest_0202 at 201.357 kb on + strand, within Psest_0202 at 201.357 kb on + strand, within Psest_0202 at 201.357 kb on + strand, within Psest_0202 at 201.357 kb on + strand, within Psest_0202 at 201.357 kb on + strand, within Psest_0202 at 201.357 kb on + strand, within Psest_0202 at 201.357 kb on + strand, within Psest_0202 at 201.358 kb on - strand, within Psest_0202 at 201.358 kb on - strand, within Psest_0202 at 201.358 kb on - strand, within Psest_0202 at 201.358 kb on - strand, within Psest_0202 at 201.358 kb on - strand, within Psest_0202 at 201.358 kb on - strand, within Psest_0202 at 201.358 kb on - strand, within Psest_0202 at 201.358 kb on - strand, within Psest_0202 at 201.358 kb on - strand, within Psest_0202 at 201.358 kb on - strand, within Psest_0202 at 201.358 kb on - strand, within Psest_0202 at 201.358 kb on - strand, within Psest_0202 at 201.358 kb on - strand, within Psest_0202 at 201.358 kb on - strand, within Psest_0202 at 201.358 kb on - strand, within Psest_0202 at 201.358 kb on - strand, within Psest_0202 at 201.358 kb on - strand, within Psest_0202 at 201.358 kb on - strand, within Psest_0202 at 201.360 kb on - strand, within Psest_0202 at 201.360 kb on - strand, within Psest_0202 at 201.492 kb on + strand, within Psest_0202 at 201.531 kb on + strand, within Psest_0202 at 201.532 kb on - strand, within Psest_0202 at 201.532 kb on - strand, within Psest_0202 at 201.549 kb on + strand, within Psest_0202 at 201.549 kb on + strand, within Psest_0202 at 201.570 kb on + strand, within Psest_0202 at 201.570 kb on + strand, within Psest_0202 at 201.570 kb on + strand, within Psest_0202 at 201.570 kb on + strand, within Psest_0202 at 201.570 kb on + strand, within Psest_0202 at 201.570 kb on + strand, within Psest_0202 at 201.570 kb on + strand, within Psest_0202 at 201.571 kb on - strand, within Psest_0202 at 201.571 kb on - strand, within Psest_0202 at 201.571 kb on - strand, within Psest_0202 at 201.571 kb on - strand, within Psest_0202 at 201.603 kb on + strand, within Psest_0202 at 201.603 kb on + strand, within Psest_0202 at 201.603 kb on + strand, within Psest_0202 at 201.603 kb on + strand, within Psest_0202 at 201.756 kb on + strand, within Psest_0202 at 201.757 kb on - strand, within Psest_0202 at 202.209 kb on + strand, within Psest_0202 at 202.209 kb on + strand, within Psest_0202 at 202.348 kb on + strand, within Psest_0202 at 202.728 kb on + strand at 202.728 kb on + strand at 202.728 kb on + strand at 202.728 kb on + strand at 202.729 kb on - strand at 202.729 kb on - strand at 202.953 kb on - strand, within Psest_0203 at 202.953 kb on - strand, within Psest_0203 at 203.068 kb on - strand, within Psest_0203
Per-strain Table
Position Strand Gene LocusTag Fraction Zinc 0.12 mM remove 200,181 + Psest_0201 0.63 -1.7 200,182 - Psest_0201 0.63 -1.0 200,182 - Psest_0201 0.63 +0.6 200,243 + Psest_0201 0.67 -3.1 200,395 - Psest_0201 0.77 -0.1 200,640 + +0.8 200,829 + +1.6 200,829 + -0.5 200,829 + -0.3 200,829 + -1.5 200,829 + +0.6 200,833 + +0.2 200,833 + -0.3 201,024 + -0.3 201,024 + +0.6 201,024 + -0.9 201,024 + -0.0 201,024 + +0.4 201,024 + -1.2 201,024 + -0.8 201,024 + +0.9 201,025 - -0.6 201,147 + Psest_0202 0.13 -0.9 201,147 + Psest_0202 0.13 -0.2 201,147 + Psest_0202 0.13 +0.9 201,148 - Psest_0202 0.13 +0.1 201,148 - Psest_0202 0.13 -0.9 201,148 - Psest_0202 0.13 -0.6 201,178 - Psest_0202 0.15 +0.2 201,357 + Psest_0202 0.24 -0.1 201,357 + Psest_0202 0.24 +0.2 201,357 + Psest_0202 0.24 +0.3 201,357 + Psest_0202 0.24 +0.5 201,357 + Psest_0202 0.24 -1.5 201,357 + Psest_0202 0.24 -0.5 201,357 + Psest_0202 0.24 -0.2 201,357 + Psest_0202 0.24 +0.4 201,357 + Psest_0202 0.24 +1.8 201,358 - Psest_0202 0.24 -0.2 201,358 - Psest_0202 0.24 +2.7 201,358 - Psest_0202 0.24 +0.7 201,358 - Psest_0202 0.24 -0.4 201,358 - Psest_0202 0.24 -0.4 201,358 - Psest_0202 0.24 -2.6 201,358 - Psest_0202 0.24 -2.2 201,358 - Psest_0202 0.24 -0.9 201,358 - Psest_0202 0.24 -1.6 201,358 - Psest_0202 0.24 -0.4 201,358 - Psest_0202 0.24 -0.8 201,358 - Psest_0202 0.24 +2.4 201,358 - Psest_0202 0.24 -1.0 201,358 - Psest_0202 0.24 +0.2 201,358 - Psest_0202 0.24 +1.1 201,358 - Psest_0202 0.24 +0.2 201,358 - Psest_0202 0.24 -1.6 201,358 - Psest_0202 0.24 +0.8 201,360 - Psest_0202 0.24 -0.5 201,360 - Psest_0202 0.24 -1.0 201,492 + Psest_0202 0.31 +0.8 201,531 + Psest_0202 0.33 -1.0 201,532 - Psest_0202 0.33 +1.2 201,532 - Psest_0202 0.33 -1.1 201,549 + Psest_0202 0.34 -0.2 201,549 + Psest_0202 0.34 -1.8 201,570 + Psest_0202 0.35 -1.2 201,570 + Psest_0202 0.35 -1.0 201,570 + Psest_0202 0.35 -1.2 201,570 + Psest_0202 0.35 +0.1 201,570 + Psest_0202 0.35 -0.2 201,570 + Psest_0202 0.35 -0.2 201,570 + Psest_0202 0.35 -0.2 201,571 - Psest_0202 0.35 -1.2 201,571 - Psest_0202 0.35 -0.5 201,571 - Psest_0202 0.35 -2.3 201,571 - Psest_0202 0.35 -0.8 201,603 + Psest_0202 0.37 -0.5 201,603 + Psest_0202 0.37 -0.1 201,603 + Psest_0202 0.37 -0.4 201,603 + Psest_0202 0.37 -1.3 201,756 + Psest_0202 0.45 -0.4 201,757 - Psest_0202 0.45 -1.4 202,209 + Psest_0202 0.68 -0.9 202,209 + Psest_0202 0.68 -0.7 202,348 + Psest_0202 0.75 -1.2 202,728 + +0.4 202,728 + +1.7 202,728 + +0.0 202,728 + -0.4 202,729 - +0.8 202,729 - +0.1 202,953 - Psest_0203 0.11 +0.2 202,953 - Psest_0203 0.11 -0.0 203,068 - Psest_0203 0.19 +0.7
Or see this region's nucleotide sequence