Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1682

Experiment: Zinc 0.12 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1680 and Psest_1681 overlap by 8 nucleotidesPsest_1681 and Psest_1682 overlap by 11 nucleotidesPsest_1682 and Psest_1683 are separated by 10 nucleotidesPsest_1683 and Psest_1684 are separated by 103 nucleotides Psest_1680: Psest_1680 - pseudouridine synthase, RluA family, at 1,790,226 to 1,791,179 _1680 Psest_1681: Psest_1681 - haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E, at 1,791,172 to 1,791,858 _1681 Psest_1682: Psest_1682 - Periplasmic serine proteases (ClpP class), at 1,791,848 to 1,792,831 _1682 Psest_1683: Psest_1683 - MAF protein, at 1,792,842 to 1,793,420 _1683 Psest_1684: Psest_1684 - Predicted metal-binding, possibly nucleic acid-binding protein, at 1,793,524 to 1,794,051 _1684 Position (kb) 1791 1792 1793Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1791.177 kb on + strandat 1791.177 kb on + strandat 1791.177 kb on + strandat 1791.177 kb on + strandat 1791.177 kb on + strandat 1791.177 kb on + strandat 1791.177 kb on + strandat 1791.177 kb on + strandat 1791.177 kb on + strandat 1791.177 kb on + strandat 1791.178 kb on - strandat 1791.178 kb on - strandat 1791.181 kb on + strandat 1791.181 kb on + strandat 1791.248 kb on + strand, within Psest_1681at 1791.248 kb on + strand, within Psest_1681at 1791.248 kb on + strand, within Psest_1681at 1791.248 kb on + strand, within Psest_1681at 1791.248 kb on + strand, within Psest_1681at 1791.248 kb on + strand, within Psest_1681at 1791.248 kb on + strand, within Psest_1681at 1791.249 kb on - strand, within Psest_1681at 1791.249 kb on - strand, within Psest_1681at 1791.485 kb on - strand, within Psest_1681at 1791.689 kb on + strand, within Psest_1681at 1791.689 kb on + strand, within Psest_1681at 1791.689 kb on + strand, within Psest_1681at 1791.690 kb on - strand, within Psest_1681at 1791.845 kb on + strandat 1791.845 kb on + strandat 1791.845 kb on + strandat 1791.845 kb on + strandat 1791.845 kb on + strandat 1791.845 kb on + strandat 1791.845 kb on + strandat 1791.845 kb on + strandat 1791.846 kb on - strandat 1791.846 kb on - strandat 1791.846 kb on - strandat 1791.846 kb on - strandat 1791.846 kb on - strandat 1791.846 kb on - strandat 1791.969 kb on + strand, within Psest_1682at 1791.969 kb on + strand, within Psest_1682at 1791.993 kb on + strand, within Psest_1682at 1791.993 kb on + strand, within Psest_1682at 1791.993 kb on + strand, within Psest_1682at 1791.993 kb on + strand, within Psest_1682at 1791.993 kb on + strand, within Psest_1682at 1791.993 kb on + strand, within Psest_1682at 1791.993 kb on + strand, within Psest_1682at 1791.993 kb on + strand, within Psest_1682at 1791.993 kb on + strand, within Psest_1682at 1791.993 kb on + strand, within Psest_1682at 1791.994 kb on - strand, within Psest_1682at 1791.994 kb on - strand, within Psest_1682at 1791.994 kb on - strand, within Psest_1682at 1791.994 kb on - strand, within Psest_1682at 1791.994 kb on - strand, within Psest_1682at 1791.994 kb on - strand, within Psest_1682at 1791.994 kb on - strand, within Psest_1682at 1791.996 kb on - strand, within Psest_1682at 1791.996 kb on - strand, within Psest_1682at 1791.996 kb on - strand, within Psest_1682at 1792.077 kb on + strand, within Psest_1682at 1792.129 kb on + strand, within Psest_1682at 1792.129 kb on + strand, within Psest_1682at 1792.131 kb on + strand, within Psest_1682at 1792.131 kb on + strand, within Psest_1682at 1792.131 kb on + strand, within Psest_1682at 1792.131 kb on + strand, within Psest_1682at 1792.131 kb on + strand, within Psest_1682at 1792.132 kb on - strand, within Psest_1682at 1792.226 kb on + strand, within Psest_1682at 1792.226 kb on + strand, within Psest_1682at 1792.226 kb on + strand, within Psest_1682at 1792.226 kb on + strand, within Psest_1682at 1792.228 kb on + strand, within Psest_1682at 1792.228 kb on + strand, within Psest_1682at 1792.228 kb on + strand, within Psest_1682at 1792.228 kb on + strand, within Psest_1682at 1792.229 kb on - strand, within Psest_1682at 1792.229 kb on - strand, within Psest_1682at 1792.232 kb on + strand, within Psest_1682at 1792.232 kb on + strand, within Psest_1682at 1792.232 kb on + strand, within Psest_1682at 1792.232 kb on + strand, within Psest_1682at 1792.233 kb on - strand, within Psest_1682at 1792.233 kb on - strand, within Psest_1682at 1792.316 kb on + strand, within Psest_1682at 1792.316 kb on + strand, within Psest_1682at 1792.317 kb on - strand, within Psest_1682at 1792.319 kb on + strand, within Psest_1682at 1792.319 kb on + strand, within Psest_1682at 1792.319 kb on + strand, within Psest_1682at 1792.319 kb on + strand, within Psest_1682at 1792.319 kb on + strand, within Psest_1682at 1792.319 kb on + strand, within Psest_1682at 1792.319 kb on + strand, within Psest_1682at 1792.319 kb on + strand, within Psest_1682at 1792.320 kb on - strand, within Psest_1682at 1792.321 kb on + strand, within Psest_1682at 1792.321 kb on + strand, within Psest_1682at 1792.346 kb on + strand, within Psest_1682at 1792.346 kb on + strand, within Psest_1682at 1792.346 kb on + strand, within Psest_1682at 1792.347 kb on - strand, within Psest_1682at 1792.445 kb on + strand, within Psest_1682at 1792.447 kb on + strand, within Psest_1682at 1792.447 kb on + strand, within Psest_1682at 1792.447 kb on + strand, within Psest_1682at 1792.448 kb on - strand, within Psest_1682at 1793.009 kb on - strand, within Psest_1683at 1793.078 kb on + strand, within Psest_1683at 1793.078 kb on + strand, within Psest_1683at 1793.079 kb on - strand, within Psest_1683at 1793.171 kb on + strand, within Psest_1683at 1793.171 kb on + strand, within Psest_1683at 1793.171 kb on + strand, within Psest_1683at 1793.171 kb on + strand, within Psest_1683at 1793.172 kb on - strand, within Psest_1683at 1793.172 kb on - strand, within Psest_1683at 1793.172 kb on - strand, within Psest_1683at 1793.172 kb on - strand, within Psest_1683at 1793.172 kb on - strand, within Psest_1683at 1793.373 kb on + strandat 1793.373 kb on + strandat 1793.373 kb on + strandat 1793.373 kb on + strandat 1793.431 kb on + strandat 1793.431 kb on + strandat 1793.431 kb on + strandat 1793.431 kb on + strandat 1793.431 kb on + strandat 1793.431 kb on + strandat 1793.432 kb on - strandat 1793.433 kb on + strandat 1793.433 kb on + strandat 1793.433 kb on + strandat 1793.433 kb on + strandat 1793.433 kb on + strandat 1793.433 kb on + strandat 1793.433 kb on + strandat 1793.433 kb on + strandat 1793.433 kb on + strandat 1793.433 kb on + strandat 1793.433 kb on + strandat 1793.433 kb on + strandat 1793.433 kb on + strandat 1793.433 kb on + strandat 1793.433 kb on + strandat 1793.433 kb on + strandat 1793.433 kb on + strandat 1793.433 kb on + strandat 1793.433 kb on + strandat 1793.433 kb on + strandat 1793.433 kb on + strandat 1793.433 kb on + strandat 1793.433 kb on + strandat 1793.433 kb on + strandat 1793.434 kb on - strandat 1793.434 kb on - strandat 1793.435 kb on + strandat 1793.435 kb on + strandat 1793.435 kb on + strandat 1793.435 kb on + strandat 1793.435 kb on + strandat 1793.435 kb on + strandat 1793.435 kb on + strandat 1793.435 kb on + strandat 1793.435 kb on + strandat 1793.435 kb on + strandat 1793.435 kb on + strandat 1793.435 kb on + strandat 1793.435 kb on + strandat 1793.435 kb on + strandat 1793.435 kb on + strandat 1793.435 kb on + strandat 1793.435 kb on + strandat 1793.435 kb on + strandat 1793.435 kb on + strandat 1793.436 kb on - strandat 1793.436 kb on - strandat 1793.437 kb on + strandat 1793.437 kb on + strandat 1793.437 kb on + strandat 1793.437 kb on + strandat 1793.437 kb on + strandat 1793.437 kb on + strandat 1793.437 kb on + strandat 1793.437 kb on + strandat 1793.437 kb on + strandat 1793.437 kb on + strandat 1793.437 kb on + strandat 1793.437 kb on + strandat 1793.437 kb on + strandat 1793.437 kb on + strandat 1793.437 kb on + strandat 1793.437 kb on + strandat 1793.437 kb on + strandat 1793.437 kb on + strandat 1793.437 kb on + strandat 1793.437 kb on + strandat 1793.437 kb on + strandat 1793.437 kb on + strandat 1793.438 kb on - strandat 1793.438 kb on - strandat 1793.438 kb on - strandat 1793.438 kb on - strandat 1793.438 kb on - strandat 1793.438 kb on - strandat 1793.438 kb on - strandat 1793.438 kb on - strandat 1793.438 kb on - strandat 1793.438 kb on - strandat 1793.438 kb on - strandat 1793.441 kb on + strandat 1793.441 kb on + strandat 1793.452 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 0.12 mM
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1,791,177 + -0.9
1,791,177 + +0.0
1,791,177 + +1.0
1,791,177 + -1.0
1,791,177 + +0.5
1,791,177 + -0.9
1,791,177 + -1.0
1,791,177 + -1.3
1,791,177 + +1.7
1,791,177 + -1.7
1,791,178 - -0.6
1,791,178 - -1.0
1,791,181 + +0.7
1,791,181 + +1.5
1,791,248 + Psest_1681 0.11 +0.8
1,791,248 + Psest_1681 0.11 -0.8
1,791,248 + Psest_1681 0.11 +0.7
1,791,248 + Psest_1681 0.11 -0.2
1,791,248 + Psest_1681 0.11 +2.2
1,791,248 + Psest_1681 0.11 -0.9
1,791,248 + Psest_1681 0.11 +1.2
1,791,249 - Psest_1681 0.11 +0.2
1,791,249 - Psest_1681 0.11 +2.5
1,791,485 - Psest_1681 0.46 -0.7
1,791,689 + Psest_1681 0.75 +1.3
1,791,689 + Psest_1681 0.75 +0.1
1,791,689 + Psest_1681 0.75 +0.7
1,791,690 - Psest_1681 0.75 +0.8
1,791,845 + +2.2
1,791,845 + -0.5
1,791,845 + -1.3
1,791,845 + +0.5
1,791,845 + -1.0
1,791,845 + -2.2
1,791,845 + +0.3
1,791,845 + -0.8
1,791,846 - -1.5
1,791,846 - +0.1
1,791,846 - +0.2
1,791,846 - +0.9
1,791,846 - +0.6
1,791,846 - +1.4
1,791,969 + Psest_1682 0.12 -1.1
1,791,969 + Psest_1682 0.12 -1.7
1,791,993 + Psest_1682 0.15 -1.2
1,791,993 + Psest_1682 0.15 -0.2
1,791,993 + Psest_1682 0.15 +0.6
1,791,993 + Psest_1682 0.15 -0.6
1,791,993 + Psest_1682 0.15 +0.1
1,791,993 + Psest_1682 0.15 -1.3
1,791,993 + Psest_1682 0.15 -1.6
1,791,993 + Psest_1682 0.15 -1.3
1,791,993 + Psest_1682 0.15 +0.5
1,791,993 + Psest_1682 0.15 +0.1
1,791,994 - Psest_1682 0.15 -0.4
1,791,994 - Psest_1682 0.15 -2.2
1,791,994 - Psest_1682 0.15 +0.3
1,791,994 - Psest_1682 0.15 +0.6
1,791,994 - Psest_1682 0.15 +0.3
1,791,994 - Psest_1682 0.15 -0.5
1,791,994 - Psest_1682 0.15 +0.4
1,791,996 - Psest_1682 0.15 +0.1
1,791,996 - Psest_1682 0.15 -0.0
1,791,996 - Psest_1682 0.15 -0.5
1,792,077 + Psest_1682 0.23 -0.6
1,792,129 + Psest_1682 0.29 -1.8
1,792,129 + Psest_1682 0.29 -0.3
1,792,131 + Psest_1682 0.29 -1.2
1,792,131 + Psest_1682 0.29 -1.3
1,792,131 + Psest_1682 0.29 -0.4
1,792,131 + Psest_1682 0.29 -0.5
1,792,131 + Psest_1682 0.29 +0.4
1,792,132 - Psest_1682 0.29 -0.6
1,792,226 + Psest_1682 0.38 -0.8
1,792,226 + Psest_1682 0.38 +0.2
1,792,226 + Psest_1682 0.38 -1.0
1,792,226 + Psest_1682 0.38 -0.2
1,792,228 + Psest_1682 0.39 -0.1
1,792,228 + Psest_1682 0.39 -1.8
1,792,228 + Psest_1682 0.39 -0.3
1,792,228 + Psest_1682 0.39 -1.1
1,792,229 - Psest_1682 0.39 -0.5
1,792,229 - Psest_1682 0.39 -1.7
1,792,232 + Psest_1682 0.39 -0.4
1,792,232 + Psest_1682 0.39 +1.0
1,792,232 + Psest_1682 0.39 -0.7
1,792,232 + Psest_1682 0.39 +2.7
1,792,233 - Psest_1682 0.39 -1.7
1,792,233 - Psest_1682 0.39 -0.3
1,792,316 + Psest_1682 0.48 +0.2
1,792,316 + Psest_1682 0.48 -0.1
1,792,317 - Psest_1682 0.48 +1.0
1,792,319 + Psest_1682 0.48 +1.2
1,792,319 + Psest_1682 0.48 -0.5
1,792,319 + Psest_1682 0.48 +1.0
1,792,319 + Psest_1682 0.48 -0.6
1,792,319 + Psest_1682 0.48 +0.6
1,792,319 + Psest_1682 0.48 -0.2
1,792,319 + Psest_1682 0.48 +0.3
1,792,319 + Psest_1682 0.48 -0.8
1,792,320 - Psest_1682 0.48 -2.9
1,792,321 + Psest_1682 0.48 +0.5
1,792,321 + Psest_1682 0.48 +0.3
1,792,346 + Psest_1682 0.51 +1.7
1,792,346 + Psest_1682 0.51 +0.6
1,792,346 + Psest_1682 0.51 +0.3
1,792,347 - Psest_1682 0.51 +0.7
1,792,445 + Psest_1682 0.61 +1.6
1,792,447 + Psest_1682 0.61 +0.3
1,792,447 + Psest_1682 0.61 +1.4
1,792,447 + Psest_1682 0.61 +0.4
1,792,448 - Psest_1682 0.61 -0.0
1,793,009 - Psest_1683 0.29 +0.1
1,793,078 + Psest_1683 0.41 +0.1
1,793,078 + Psest_1683 0.41 -1.4
1,793,079 - Psest_1683 0.41 -0.9
1,793,171 + Psest_1683 0.57 -0.7
1,793,171 + Psest_1683 0.57 +0.2
1,793,171 + Psest_1683 0.57 -0.7
1,793,171 + Psest_1683 0.57 -0.1
1,793,172 - Psest_1683 0.57 +0.3
1,793,172 - Psest_1683 0.57 -0.5
1,793,172 - Psest_1683 0.57 +1.1
1,793,172 - Psest_1683 0.57 -0.6
1,793,172 - Psest_1683 0.57 +0.6
1,793,373 + +1.0
1,793,373 + +0.5
1,793,373 + +0.4
1,793,373 + +0.0
1,793,431 + -1.2
1,793,431 + +0.5
1,793,431 + +0.6
1,793,431 + +0.5
1,793,431 + -0.5
1,793,431 + +2.1
1,793,432 - +2.2
1,793,433 + -0.4
1,793,433 + +0.1
1,793,433 + +0.7
1,793,433 + +0.7
1,793,433 + -1.6
1,793,433 + -1.3
1,793,433 + -0.4
1,793,433 + -0.2
1,793,433 + -0.8
1,793,433 + +0.1
1,793,433 + +0.6
1,793,433 + -0.8
1,793,433 + -0.9
1,793,433 + -0.4
1,793,433 + +1.0
1,793,433 + -1.3
1,793,433 + +0.8
1,793,433 + -1.7
1,793,433 + +0.3
1,793,433 + -0.5
1,793,433 + +0.9
1,793,433 + -0.1
1,793,433 + -0.1
1,793,433 + -0.3
1,793,434 - +0.9
1,793,434 - +1.5
1,793,435 + -1.9
1,793,435 + -0.3
1,793,435 + -2.2
1,793,435 + -0.8
1,793,435 + +0.4
1,793,435 + +0.5
1,793,435 + +0.9
1,793,435 + +0.1
1,793,435 + +1.1
1,793,435 + +0.2
1,793,435 + +0.6
1,793,435 + +2.1
1,793,435 + +0.6
1,793,435 + -0.5
1,793,435 + +0.0
1,793,435 + +0.7
1,793,435 + +0.3
1,793,435 + -1.8
1,793,435 + +1.2
1,793,436 - +0.9
1,793,436 - +1.0
1,793,437 + -0.3
1,793,437 + +0.4
1,793,437 + -0.2
1,793,437 + -1.3
1,793,437 + -0.9
1,793,437 + -1.2
1,793,437 + -1.6
1,793,437 + +0.0
1,793,437 + +0.2
1,793,437 + -0.4
1,793,437 + -1.3
1,793,437 + +0.4
1,793,437 + +0.3
1,793,437 + -1.7
1,793,437 + +0.6
1,793,437 + -1.2
1,793,437 + +0.4
1,793,437 + -0.6
1,793,437 + -1.1
1,793,437 + +1.1
1,793,437 + -1.8
1,793,437 + +0.5
1,793,438 - +4.2
1,793,438 - -0.8
1,793,438 - +0.1
1,793,438 - +1.2
1,793,438 - +1.2
1,793,438 - -1.7
1,793,438 - -0.2
1,793,438 - +0.4
1,793,438 - -0.6
1,793,438 - +0.0
1,793,438 - +0.3
1,793,441 + -0.2
1,793,441 + +0.2
1,793,452 + +0.5

Or see this region's nucleotide sequence