Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1647

Experiment: Zinc 0.12 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1645 and Psest_1646 overlap by 23 nucleotidesPsest_1646 and Psest_1647 are separated by 177 nucleotidesPsest_1647 and Psest_1648 are separated by 99 nucleotides Psest_1645: Psest_1645 - hypothetical protein, at 1,749,090 to 1,749,323 _1645 Psest_1646: Psest_1646 - Predicted ICC-like phosphoesterases, at 1,749,301 to 1,749,990 _1646 Psest_1647: Psest_1647 - Lhr-like helicases, at 1,750,168 to 1,752,759 _1647 Psest_1648: Psest_1648 - ATP-dependent DNA ligase, at 1,752,859 to 1,754,568 _1648 Position (kb) 1750 1751 1752 1753Strain fitness (log2 ratio) -3 -2 -1 0 1at 1749.371 kb on + strand, within Psest_1646at 1749.371 kb on + strand, within Psest_1646at 1749.371 kb on + strand, within Psest_1646at 1749.371 kb on + strand, within Psest_1646at 1749.371 kb on + strand, within Psest_1646at 1749.371 kb on + strand, within Psest_1646at 1749.371 kb on + strand, within Psest_1646at 1749.371 kb on + strand, within Psest_1646at 1749.372 kb on - strand, within Psest_1646at 1749.372 kb on - strand, within Psest_1646at 1749.372 kb on - strand, within Psest_1646at 1749.372 kb on - strand, within Psest_1646at 1749.372 kb on - strand, within Psest_1646at 1749.621 kb on + strand, within Psest_1646at 1749.622 kb on - strand, within Psest_1646at 1749.853 kb on + strand, within Psest_1646at 1749.853 kb on + strand, within Psest_1646at 1749.970 kb on + strandat 1750.542 kb on - strand, within Psest_1647at 1750.638 kb on + strand, within Psest_1647at 1750.638 kb on + strand, within Psest_1647at 1750.639 kb on - strand, within Psest_1647at 1750.639 kb on - strand, within Psest_1647at 1750.639 kb on - strand, within Psest_1647at 1750.639 kb on - strand, within Psest_1647at 1750.976 kb on - strand, within Psest_1647at 1751.655 kb on + strand, within Psest_1647at 1751.864 kb on - strand, within Psest_1647at 1752.465 kb on - strand, within Psest_1647at 1752.614 kb on + strandat 1752.614 kb on + strandat 1752.614 kb on + strandat 1752.615 kb on - strandat 1752.615 kb on - strandat 1752.615 kb on - strandat 1753.063 kb on + strand, within Psest_1648at 1753.063 kb on + strand, within Psest_1648at 1753.063 kb on + strand, within Psest_1648at 1753.064 kb on - strand, within Psest_1648at 1753.178 kb on + strand, within Psest_1648at 1753.178 kb on + strand, within Psest_1648at 1753.187 kb on + strand, within Psest_1648at 1753.188 kb on - strand, within Psest_1648at 1753.188 kb on - strand, within Psest_1648at 1753.189 kb on + strand, within Psest_1648at 1753.189 kb on + strand, within Psest_1648at 1753.189 kb on + strand, within Psest_1648at 1753.190 kb on - strand, within Psest_1648at 1753.190 kb on - strand, within Psest_1648at 1753.190 kb on - strand, within Psest_1648at 1753.223 kb on + strand, within Psest_1648at 1753.223 kb on + strand, within Psest_1648at 1753.224 kb on - strand, within Psest_1648at 1753.224 kb on - strand, within Psest_1648at 1753.224 kb on - strand, within Psest_1648at 1753.224 kb on - strand, within Psest_1648at 1753.520 kb on + strand, within Psest_1648at 1753.520 kb on + strand, within Psest_1648at 1753.520 kb on + strand, within Psest_1648

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 0.12 mM
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1,749,371 + Psest_1646 0.10 -1.5
1,749,371 + Psest_1646 0.10 +1.2
1,749,371 + Psest_1646 0.10 -1.1
1,749,371 + Psest_1646 0.10 -0.1
1,749,371 + Psest_1646 0.10 +1.4
1,749,371 + Psest_1646 0.10 +0.1
1,749,371 + Psest_1646 0.10 +0.5
1,749,371 + Psest_1646 0.10 +1.4
1,749,372 - Psest_1646 0.10 +0.8
1,749,372 - Psest_1646 0.10 -0.7
1,749,372 - Psest_1646 0.10 -1.7
1,749,372 - Psest_1646 0.10 +1.3
1,749,372 - Psest_1646 0.10 +1.3
1,749,621 + Psest_1646 0.46 +1.7
1,749,622 - Psest_1646 0.47 -0.4
1,749,853 + Psest_1646 0.80 -0.3
1,749,853 + Psest_1646 0.80 -1.2
1,749,970 + +0.9
1,750,542 - Psest_1647 0.14 -1.3
1,750,638 + Psest_1647 0.18 +0.7
1,750,638 + Psest_1647 0.18 -1.1
1,750,639 - Psest_1647 0.18 -0.4
1,750,639 - Psest_1647 0.18 +0.0
1,750,639 - Psest_1647 0.18 -1.5
1,750,639 - Psest_1647 0.18 -1.6
1,750,976 - Psest_1647 0.31 -0.4
1,751,655 + Psest_1647 0.57 -0.6
1,751,864 - Psest_1647 0.65 +0.2
1,752,465 - Psest_1647 0.89 -0.2
1,752,614 + -0.8
1,752,614 + -0.6
1,752,614 + -0.2
1,752,615 - +0.6
1,752,615 - +0.2
1,752,615 - +0.4
1,753,063 + Psest_1648 0.12 -0.3
1,753,063 + Psest_1648 0.12 +0.2
1,753,063 + Psest_1648 0.12 +0.1
1,753,064 - Psest_1648 0.12 -0.5
1,753,178 + Psest_1648 0.19 -0.4
1,753,178 + Psest_1648 0.19 +0.2
1,753,187 + Psest_1648 0.19 +1.1
1,753,188 - Psest_1648 0.19 -2.2
1,753,188 - Psest_1648 0.19 +0.2
1,753,189 + Psest_1648 0.19 +0.7
1,753,189 + Psest_1648 0.19 +1.4
1,753,189 + Psest_1648 0.19 +0.9
1,753,190 - Psest_1648 0.19 -0.4
1,753,190 - Psest_1648 0.19 -1.3
1,753,190 - Psest_1648 0.19 -3.2
1,753,223 + Psest_1648 0.21 +0.8
1,753,223 + Psest_1648 0.21 -0.2
1,753,224 - Psest_1648 0.21 -0.9
1,753,224 - Psest_1648 0.21 -1.2
1,753,224 - Psest_1648 0.21 -0.5
1,753,224 - Psest_1648 0.21 -0.3
1,753,520 + Psest_1648 0.39 -0.8
1,753,520 + Psest_1648 0.39 -2.2
1,753,520 + Psest_1648 0.39 -0.2

Or see this region's nucleotide sequence