Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4254

Experiment: Thallium(I) acetate 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4253 and Psest_4254 are separated by 27 nucleotidesPsest_4254 and Psest_4255 are separated by 144 nucleotides Psest_4253: Psest_4253 - hypothetical protein, at 4,439,748 to 4,441,619 _4253 Psest_4254: Psest_4254 - Catalase, at 4,441,647 to 4,442,783 _4254 Psest_4255: Psest_4255 - conserved hypothetical integral membrane protein, at 4,442,928 to 4,444,076 _4255 Position (kb) 4441 4442 4443Strain fitness (log2 ratio) -2 -1 0 1 2at 4440.705 kb on + strand, within Psest_4253at 4440.724 kb on + strand, within Psest_4253at 4440.837 kb on + strand, within Psest_4253at 4440.837 kb on + strand, within Psest_4253at 4440.838 kb on - strand, within Psest_4253at 4440.838 kb on - strand, within Psest_4253at 4440.838 kb on - strand, within Psest_4253at 4440.977 kb on + strand, within Psest_4253at 4440.977 kb on + strand, within Psest_4253at 4440.977 kb on + strand, within Psest_4253at 4440.978 kb on - strand, within Psest_4253at 4440.978 kb on - strand, within Psest_4253at 4440.978 kb on - strand, within Psest_4253at 4441.053 kb on + strand, within Psest_4253at 4441.053 kb on + strand, within Psest_4253at 4441.053 kb on + strand, within Psest_4253at 4441.054 kb on - strand, within Psest_4253at 4441.113 kb on + strand, within Psest_4253at 4441.113 kb on + strand, within Psest_4253at 4441.113 kb on + strand, within Psest_4253at 4441.113 kb on + strand, within Psest_4253at 4441.113 kb on + strand, within Psest_4253at 4441.113 kb on + strand, within Psest_4253at 4441.114 kb on - strand, within Psest_4253at 4441.114 kb on - strand, within Psest_4253at 4441.114 kb on - strand, within Psest_4253at 4441.114 kb on - strand, within Psest_4253at 4441.114 kb on - strand, within Psest_4253at 4441.114 kb on - strand, within Psest_4253at 4441.114 kb on - strand, within Psest_4253at 4441.114 kb on - strand, within Psest_4253at 4441.114 kb on - strand, within Psest_4253at 4441.114 kb on - strand, within Psest_4253at 4441.114 kb on - strand, within Psest_4253at 4441.114 kb on - strand, within Psest_4253at 4441.114 kb on - strand, within Psest_4253at 4441.114 kb on - strand, within Psest_4253at 4441.114 kb on - strand, within Psest_4253at 4441.114 kb on - strand, within Psest_4253at 4441.114 kb on - strand, within Psest_4253at 4441.114 kb on - strand, within Psest_4253at 4441.114 kb on - strand, within Psest_4253at 4441.115 kb on + strand, within Psest_4253at 4441.115 kb on + strand, within Psest_4253at 4441.125 kb on + strand, within Psest_4253at 4441.125 kb on + strand, within Psest_4253at 4441.125 kb on + strand, within Psest_4253at 4441.125 kb on + strand, within Psest_4253at 4441.126 kb on - strand, within Psest_4253at 4441.126 kb on - strand, within Psest_4253at 4441.126 kb on - strand, within Psest_4253at 4441.227 kb on + strand, within Psest_4253at 4441.227 kb on + strand, within Psest_4253at 4441.359 kb on + strand, within Psest_4253at 4441.531 kb on - strandat 4442.328 kb on + strand, within Psest_4254at 4442.329 kb on - strand, within Psest_4254at 4442.329 kb on - strand, within Psest_4254at 4442.329 kb on - strand, within Psest_4254at 4442.329 kb on - strand, within Psest_4254at 4442.329 kb on - strand, within Psest_4254at 4442.329 kb on - strand, within Psest_4254at 4442.329 kb on - strand, within Psest_4254at 4442.329 kb on - strand, within Psest_4254at 4442.329 kb on - strand, within Psest_4254at 4442.347 kb on - strand, within Psest_4254at 4442.373 kb on + strand, within Psest_4254at 4442.409 kb on + strand, within Psest_4254at 4442.409 kb on + strand, within Psest_4254at 4442.410 kb on - strand, within Psest_4254at 4442.410 kb on - strand, within Psest_4254at 4442.411 kb on - strand, within Psest_4254at 4442.535 kb on + strand, within Psest_4254at 4442.535 kb on + strand, within Psest_4254at 4442.535 kb on + strand, within Psest_4254at 4442.535 kb on + strand, within Psest_4254at 4442.536 kb on - strand, within Psest_4254at 4442.536 kb on - strand, within Psest_4254at 4442.536 kb on - strand, within Psest_4254at 4442.536 kb on - strand, within Psest_4254at 4442.536 kb on - strand, within Psest_4254at 4442.536 kb on - strand, within Psest_4254at 4442.536 kb on - strand, within Psest_4254at 4442.536 kb on - strand, within Psest_4254at 4442.536 kb on - strand, within Psest_4254at 4442.536 kb on - strand, within Psest_4254at 4442.536 kb on - strand, within Psest_4254at 4442.536 kb on - strand, within Psest_4254at 4442.737 kb on - strandat 4442.878 kb on + strandat 4442.879 kb on - strandat 4442.908 kb on + strandat 4442.908 kb on + strandat 4442.908 kb on + strandat 4442.908 kb on + strandat 4442.909 kb on - strandat 4442.909 kb on - strandat 4442.909 kb on - strandat 4442.909 kb on - strandat 4442.909 kb on - strandat 4442.909 kb on - strandat 4442.909 kb on - strandat 4442.909 kb on - strandat 4442.909 kb on - strandat 4442.909 kb on - strandat 4443.049 kb on + strandat 4443.049 kb on + strand, within Psest_4255at 4443.049 kb on + strand, within Psest_4255at 4443.050 kb on - strand, within Psest_4255at 4443.050 kb on - strand, within Psest_4255at 4443.546 kb on + strand, within Psest_4255at 4443.546 kb on + strand, within Psest_4255at 4443.546 kb on + strand, within Psest_4255at 4443.546 kb on + strand, within Psest_4255at 4443.546 kb on + strand, within Psest_4255at 4443.546 kb on + strand, within Psest_4255at 4443.546 kb on + strand, within Psest_4255at 4443.546 kb on + strand, within Psest_4255at 4443.715 kb on + strand, within Psest_4255at 4443.715 kb on + strand, within Psest_4255at 4443.715 kb on + strand, within Psest_4255at 4443.715 kb on + strand, within Psest_4255at 4443.716 kb on - strand, within Psest_4255at 4443.721 kb on + strand, within Psest_4255at 4443.722 kb on - strand, within Psest_4255

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.1 mg/ml
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4,440,705 + Psest_4253 0.51 +0.4
4,440,724 + Psest_4253 0.52 -2.6
4,440,837 + Psest_4253 0.58 -1.9
4,440,837 + Psest_4253 0.58 +1.0
4,440,838 - Psest_4253 0.58 +1.6
4,440,838 - Psest_4253 0.58 -0.2
4,440,838 - Psest_4253 0.58 +1.4
4,440,977 + Psest_4253 0.66 -0.6
4,440,977 + Psest_4253 0.66 -0.2
4,440,977 + Psest_4253 0.66 -1.7
4,440,978 - Psest_4253 0.66 +1.1
4,440,978 - Psest_4253 0.66 -0.3
4,440,978 - Psest_4253 0.66 -0.2
4,441,053 + Psest_4253 0.70 -0.1
4,441,053 + Psest_4253 0.70 +0.8
4,441,053 + Psest_4253 0.70 -0.1
4,441,054 - Psest_4253 0.70 -1.0
4,441,113 + Psest_4253 0.73 -0.2
4,441,113 + Psest_4253 0.73 -1.5
4,441,113 + Psest_4253 0.73 -1.4
4,441,113 + Psest_4253 0.73 -0.9
4,441,113 + Psest_4253 0.73 +0.8
4,441,113 + Psest_4253 0.73 -1.8
4,441,114 - Psest_4253 0.73 +0.0
4,441,114 - Psest_4253 0.73 -0.3
4,441,114 - Psest_4253 0.73 -0.1
4,441,114 - Psest_4253 0.73 -2.2
4,441,114 - Psest_4253 0.73 +0.4
4,441,114 - Psest_4253 0.73 +0.6
4,441,114 - Psest_4253 0.73 +2.2
4,441,114 - Psest_4253 0.73 +1.0
4,441,114 - Psest_4253 0.73 -0.1
4,441,114 - Psest_4253 0.73 +1.1
4,441,114 - Psest_4253 0.73 +0.4
4,441,114 - Psest_4253 0.73 +0.1
4,441,114 - Psest_4253 0.73 -0.6
4,441,114 - Psest_4253 0.73 -0.0
4,441,114 - Psest_4253 0.73 -1.8
4,441,114 - Psest_4253 0.73 +0.5
4,441,114 - Psest_4253 0.73 -1.0
4,441,114 - Psest_4253 0.73 -0.4
4,441,114 - Psest_4253 0.73 +1.0
4,441,115 + Psest_4253 0.73 +0.4
4,441,115 + Psest_4253 0.73 +1.0
4,441,125 + Psest_4253 0.74 +0.9
4,441,125 + Psest_4253 0.74 +0.3
4,441,125 + Psest_4253 0.74 +1.2
4,441,125 + Psest_4253 0.74 +0.4
4,441,126 - Psest_4253 0.74 +1.7
4,441,126 - Psest_4253 0.74 +0.9
4,441,126 - Psest_4253 0.74 +0.1
4,441,227 + Psest_4253 0.79 -0.7
4,441,227 + Psest_4253 0.79 +1.0
4,441,359 + Psest_4253 0.86 -0.4
4,441,531 - +0.2
4,442,328 + Psest_4254 0.60 -0.6
4,442,329 - Psest_4254 0.60 -0.7
4,442,329 - Psest_4254 0.60 +1.1
4,442,329 - Psest_4254 0.60 +0.1
4,442,329 - Psest_4254 0.60 +0.0
4,442,329 - Psest_4254 0.60 -0.6
4,442,329 - Psest_4254 0.60 -1.6
4,442,329 - Psest_4254 0.60 -2.4
4,442,329 - Psest_4254 0.60 -0.7
4,442,329 - Psest_4254 0.60 +1.6
4,442,347 - Psest_4254 0.62 -0.7
4,442,373 + Psest_4254 0.64 +0.8
4,442,409 + Psest_4254 0.67 -0.2
4,442,409 + Psest_4254 0.67 +1.0
4,442,410 - Psest_4254 0.67 -0.2
4,442,410 - Psest_4254 0.67 -2.4
4,442,411 - Psest_4254 0.67 -2.2
4,442,535 + Psest_4254 0.78 -1.1
4,442,535 + Psest_4254 0.78 -0.5
4,442,535 + Psest_4254 0.78 -0.4
4,442,535 + Psest_4254 0.78 -0.7
4,442,536 - Psest_4254 0.78 -1.1
4,442,536 - Psest_4254 0.78 -0.4
4,442,536 - Psest_4254 0.78 +0.4
4,442,536 - Psest_4254 0.78 -1.2
4,442,536 - Psest_4254 0.78 -0.4
4,442,536 - Psest_4254 0.78 -0.8
4,442,536 - Psest_4254 0.78 -0.6
4,442,536 - Psest_4254 0.78 +0.1
4,442,536 - Psest_4254 0.78 +0.5
4,442,536 - Psest_4254 0.78 -0.9
4,442,536 - Psest_4254 0.78 +0.7
4,442,536 - Psest_4254 0.78 -0.2
4,442,737 - -0.2
4,442,878 + -2.1
4,442,879 - +0.6
4,442,908 + -0.2
4,442,908 + -0.9
4,442,908 + -1.4
4,442,908 + -0.9
4,442,909 - -1.0
4,442,909 - +0.1
4,442,909 - +0.4
4,442,909 - -0.5
4,442,909 - -2.0
4,442,909 - -1.0
4,442,909 - +0.6
4,442,909 - +1.7
4,442,909 - -0.8
4,442,909 - +1.8
4,443,049 + +1.2
4,443,049 + Psest_4255 0.11 -0.8
4,443,049 + Psest_4255 0.11 -0.2
4,443,050 - Psest_4255 0.11 +0.6
4,443,050 - Psest_4255 0.11 +0.2
4,443,546 + Psest_4255 0.54 -0.8
4,443,546 + Psest_4255 0.54 +0.4
4,443,546 + Psest_4255 0.54 -0.3
4,443,546 + Psest_4255 0.54 +1.0
4,443,546 + Psest_4255 0.54 -1.0
4,443,546 + Psest_4255 0.54 +0.7
4,443,546 + Psest_4255 0.54 -0.8
4,443,546 + Psest_4255 0.54 -0.4
4,443,715 + Psest_4255 0.68 -1.5
4,443,715 + Psest_4255 0.68 +0.4
4,443,715 + Psest_4255 0.68 +0.1
4,443,715 + Psest_4255 0.68 +0.4
4,443,716 - Psest_4255 0.69 +0.1
4,443,721 + Psest_4255 0.69 +1.3
4,443,722 - Psest_4255 0.69 +0.5

Or see this region's nucleotide sequence