Experiment: Thallium(I) acetate 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2446 and Psest_2447 are separated by 11 nucleotides Psest_2447 and Psest_2448 are separated by 186 nucleotides Psest_2448 and Psest_2449 are separated by 71 nucleotides Psest_2449 and Psest_2450 are separated by 239 nucleotides
Psest_2446: Psest_2446 - acetyl-CoA acetyltransferases, at 2,615,025 to 2,616,209
_2446
Psest_2447: Psest_2447 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 2,616,221 to 2,616,988
_2447
Psest_2448: Psest_2448 - AraC-type DNA-binding domain-containing proteins, at 2,617,175 to 2,618,242
_2448
Psest_2449: Psest_2449 - Predicted membrane protein, at 2,618,314 to 2,618,751
_2449
Psest_2450: Psest_2450 - hypothetical protein, at 2,618,991 to 2,619,446
_2450
Position (kb)
2617
2618
2619 Strain fitness (log2 ratio)
-2
-1
0
1 at 2616.190 kb on - strand at 2616.222 kb on + strand at 2616.223 kb on - strand at 2616.313 kb on - strand, within Psest_2447 at 2616.410 kb on + strand, within Psest_2447 at 2616.508 kb on - strand, within Psest_2447 at 2616.508 kb on - strand, within Psest_2447 at 2616.968 kb on + strand at 2616.968 kb on + strand at 2616.969 kb on - strand at 2616.969 kb on - strand at 2616.969 kb on - strand at 2616.969 kb on - strand at 2617.033 kb on - strand at 2617.225 kb on + strand at 2617.251 kb on + strand at 2617.252 kb on - strand at 2617.526 kb on + strand, within Psest_2448 at 2617.526 kb on + strand, within Psest_2448 at 2617.527 kb on - strand, within Psest_2448 at 2617.680 kb on + strand, within Psest_2448 at 2617.681 kb on - strand, within Psest_2448 at 2617.681 kb on - strand, within Psest_2448 at 2617.779 kb on + strand, within Psest_2448 at 2617.779 kb on + strand, within Psest_2448 at 2617.779 kb on + strand, within Psest_2448 at 2617.780 kb on - strand, within Psest_2448 at 2618.040 kb on + strand at 2618.351 kb on + strand at 2618.352 kb on - strand at 2618.562 kb on - strand, within Psest_2449 at 2618.562 kb on - strand, within Psest_2449 at 2618.637 kb on + strand, within Psest_2449 at 2618.637 kb on + strand, within Psest_2449 at 2618.638 kb on - strand, within Psest_2449 at 2618.638 kb on - strand, within Psest_2449 at 2618.638 kb on - strand, within Psest_2449 at 2618.638 kb on - strand, within Psest_2449 at 2618.638 kb on - strand, within Psest_2449 at 2618.638 kb on - strand, within Psest_2449 at 2618.639 kb on + strand, within Psest_2449 at 2618.689 kb on + strand, within Psest_2449 at 2618.692 kb on + strand, within Psest_2449 at 2618.792 kb on + strand at 2618.793 kb on - strand at 2618.992 kb on + strand at 2618.993 kb on - strand at 2618.993 kb on - strand at 2619.149 kb on + strand, within Psest_2450 at 2619.184 kb on + strand, within Psest_2450 at 2619.230 kb on - strand, within Psest_2450 at 2619.235 kb on + strand, within Psest_2450 at 2619.236 kb on - strand, within Psest_2450 at 2619.236 kb on - strand, within Psest_2450 at 2619.236 kb on - strand, within Psest_2450 at 2619.236 kb on - strand, within Psest_2450
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.1 mg/ml remove 2,616,190 - -0.5 2,616,222 + -0.1 2,616,223 - -0.1 2,616,313 - Psest_2447 0.12 +1.3 2,616,410 + Psest_2447 0.25 -2.0 2,616,508 - Psest_2447 0.37 -0.8 2,616,508 - Psest_2447 0.37 -0.6 2,616,968 + -0.8 2,616,968 + +0.1 2,616,969 - -1.4 2,616,969 - +0.4 2,616,969 - -0.6 2,616,969 - -2.1 2,617,033 - -0.8 2,617,225 + +0.2 2,617,251 + +0.3 2,617,252 - -0.3 2,617,526 + Psest_2448 0.33 -1.9 2,617,526 + Psest_2448 0.33 +0.7 2,617,527 - Psest_2448 0.33 -1.0 2,617,680 + Psest_2448 0.47 -1.4 2,617,681 - Psest_2448 0.47 +0.2 2,617,681 - Psest_2448 0.47 -0.3 2,617,779 + Psest_2448 0.57 -1.8 2,617,779 + Psest_2448 0.57 -1.1 2,617,779 + Psest_2448 0.57 -0.0 2,617,780 - Psest_2448 0.57 -1.3 2,618,040 + -0.9 2,618,351 + +0.4 2,618,352 - -2.3 2,618,562 - Psest_2449 0.57 +0.1 2,618,562 - Psest_2449 0.57 -1.6 2,618,637 + Psest_2449 0.74 +0.4 2,618,637 + Psest_2449 0.74 +1.0 2,618,638 - Psest_2449 0.74 -1.0 2,618,638 - Psest_2449 0.74 -0.7 2,618,638 - Psest_2449 0.74 +0.5 2,618,638 - Psest_2449 0.74 -0.9 2,618,638 - Psest_2449 0.74 -0.3 2,618,638 - Psest_2449 0.74 +0.6 2,618,639 + Psest_2449 0.74 +0.7 2,618,689 + Psest_2449 0.86 +0.9 2,618,692 + Psest_2449 0.86 -1.5 2,618,792 + +1.3 2,618,793 - +1.2 2,618,992 + +0.1 2,618,993 - -0.6 2,618,993 - +0.5 2,619,149 + Psest_2450 0.35 +0.2 2,619,184 + Psest_2450 0.42 +0.3 2,619,230 - Psest_2450 0.52 -0.7 2,619,235 + Psest_2450 0.54 -1.6 2,619,236 - Psest_2450 0.54 -1.1 2,619,236 - Psest_2450 0.54 -0.2 2,619,236 - Psest_2450 0.54 -0.1 2,619,236 - Psest_2450 0.54 -0.3
Or see this region's nucleotide sequence