Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0639

Experiment: Thallium(I) acetate 0.09 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0637 and Psest_0638 are separated by 10 nucleotidesPsest_0638 and Psest_0639 are separated by 76 nucleotidesPsest_0639 and Psest_0640 are separated by 116 nucleotidesPsest_0640 and Psest_0641 are separated by 267 nucleotides Psest_0637: Psest_0637 - Short-chain dehydrogenases of various substrate specificities, at 692,539 to 693,369 _0637 Psest_0638: Psest_0638 - Predicted lactoylglutathione lyase, at 693,380 to 693,808 _0638 Psest_0639: Psest_0639 - Uncharacterised protein family (UPF0259)., at 693,885 to 694,565 _0639 Psest_0640: Psest_0640 - Uncharacterized conserved protein, at 694,682 to 695,158 _0640 Psest_0641: Psest_0641 - 1-deoxy-D-xylulose-5-phosphate synthase, at 695,426 to 697,324 _0641 Position (kb) 693 694 695Strain fitness (log2 ratio) -2 -1 0 1 2at 692.909 kb on - strandat 692.995 kb on + strand, within Psest_0637at 692.996 kb on - strand, within Psest_0637at 692.996 kb on - strand, within Psest_0637at 692.996 kb on - strand, within Psest_0637at 692.996 kb on - strand, within Psest_0637at 693.022 kb on + strand, within Psest_0637at 693.092 kb on + strand, within Psest_0637at 693.092 kb on + strand, within Psest_0637at 693.093 kb on - strand, within Psest_0637at 693.119 kb on - strand, within Psest_0637at 693.121 kb on - strand, within Psest_0637at 693.232 kb on + strand, within Psest_0637at 693.232 kb on + strand, within Psest_0637at 693.232 kb on + strand, within Psest_0637at 693.233 kb on - strand, within Psest_0637at 693.233 kb on - strand, within Psest_0637at 693.233 kb on - strand, within Psest_0637at 693.233 kb on - strand, within Psest_0637at 693.233 kb on - strand, within Psest_0637at 693.233 kb on - strand, within Psest_0637at 693.233 kb on - strand, within Psest_0637at 693.391 kb on + strandat 693.418 kb on + strandat 693.474 kb on + strand, within Psest_0638at 693.474 kb on + strand, within Psest_0638at 693.474 kb on + strand, within Psest_0638at 693.474 kb on + strand, within Psest_0638at 693.474 kb on + strand, within Psest_0638at 693.474 kb on + strand, within Psest_0638at 693.475 kb on - strand, within Psest_0638at 693.475 kb on - strand, within Psest_0638at 693.475 kb on - strand, within Psest_0638at 693.475 kb on - strand, within Psest_0638at 693.477 kb on + strand, within Psest_0638at 693.477 kb on + strand, within Psest_0638at 693.478 kb on - strand, within Psest_0638at 693.732 kb on + strand, within Psest_0638at 693.732 kb on + strand, within Psest_0638at 693.732 kb on + strand, within Psest_0638at 693.732 kb on + strand, within Psest_0638at 693.733 kb on - strand, within Psest_0638at 693.733 kb on - strand, within Psest_0638at 693.733 kb on - strand, within Psest_0638at 693.733 kb on - strand, within Psest_0638at 693.733 kb on - strand, within Psest_0638at 693.841 kb on + strandat 693.841 kb on + strandat 694.095 kb on + strand, within Psest_0639at 694.096 kb on - strand, within Psest_0639at 694.177 kb on + strand, within Psest_0639at 694.178 kb on - strand, within Psest_0639at 694.309 kb on + strand, within Psest_0639at 694.309 kb on + strand, within Psest_0639at 694.310 kb on - strand, within Psest_0639at 694.378 kb on + strand, within Psest_0639at 694.378 kb on + strand, within Psest_0639at 694.378 kb on + strand, within Psest_0639at 694.379 kb on - strand, within Psest_0639at 694.379 kb on - strand, within Psest_0639at 694.379 kb on - strand, within Psest_0639at 694.379 kb on - strand, within Psest_0639at 694.379 kb on - strand, within Psest_0639at 694.401 kb on + strand, within Psest_0639at 694.401 kb on + strand, within Psest_0639at 694.401 kb on + strand, within Psest_0639at 694.525 kb on + strandat 694.525 kb on + strandat 694.721 kb on + strandat 694.721 kb on + strandat 694.721 kb on + strandat 694.721 kb on + strandat 694.721 kb on + strandat 694.722 kb on - strandat 694.722 kb on - strandat 694.724 kb on + strandat 694.724 kb on + strandat 694.724 kb on + strandat 694.724 kb on + strandat 694.725 kb on - strandat 694.725 kb on - strandat 694.725 kb on - strandat 694.760 kb on + strand, within Psest_0640at 694.760 kb on + strand, within Psest_0640at 694.760 kb on + strand, within Psest_0640at 694.811 kb on + strand, within Psest_0640at 694.811 kb on + strand, within Psest_0640at 694.811 kb on + strand, within Psest_0640at 694.812 kb on - strand, within Psest_0640at 694.812 kb on - strand, within Psest_0640at 694.817 kb on + strand, within Psest_0640at 694.817 kb on + strand, within Psest_0640at 694.901 kb on + strand, within Psest_0640at 694.901 kb on + strand, within Psest_0640at 694.901 kb on + strand, within Psest_0640at 694.902 kb on - strand, within Psest_0640at 694.902 kb on - strand, within Psest_0640at 695.120 kb on + strandat 695.120 kb on + strandat 695.219 kb on + strandat 695.219 kb on + strandat 695.219 kb on + strandat 695.219 kb on + strandat 695.220 kb on - strandat 695.220 kb on - strandat 695.300 kb on + strandat 695.301 kb on - strandat 695.301 kb on - strandat 695.301 kb on - strandat 695.302 kb on + strandat 695.302 kb on + strandat 695.303 kb on - strandat 695.303 kb on - strandat 695.350 kb on + strandat 695.350 kb on + strandat 695.350 kb on + strandat 695.350 kb on + strandat 695.350 kb on + strandat 695.389 kb on - strandat 695.389 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.09 mg/ml
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692,909 - -1.1
692,995 + Psest_0637 0.55 +0.1
692,996 - Psest_0637 0.55 +1.3
692,996 - Psest_0637 0.55 -0.0
692,996 - Psest_0637 0.55 +1.5
692,996 - Psest_0637 0.55 -0.1
693,022 + Psest_0637 0.58 -0.9
693,092 + Psest_0637 0.67 -1.8
693,092 + Psest_0637 0.67 +1.9
693,093 - Psest_0637 0.67 -0.3
693,119 - Psest_0637 0.70 -0.5
693,121 - Psest_0637 0.70 -0.1
693,232 + Psest_0637 0.83 +0.5
693,232 + Psest_0637 0.83 +0.8
693,232 + Psest_0637 0.83 +0.0
693,233 - Psest_0637 0.84 -0.8
693,233 - Psest_0637 0.84 +0.2
693,233 - Psest_0637 0.84 -1.9
693,233 - Psest_0637 0.84 -0.2
693,233 - Psest_0637 0.84 -0.2
693,233 - Psest_0637 0.84 -2.3
693,233 - Psest_0637 0.84 +1.6
693,391 + -1.4
693,418 + +0.8
693,474 + Psest_0638 0.22 -1.4
693,474 + Psest_0638 0.22 -0.6
693,474 + Psest_0638 0.22 -0.2
693,474 + Psest_0638 0.22 +1.0
693,474 + Psest_0638 0.22 -1.6
693,474 + Psest_0638 0.22 -1.9
693,475 - Psest_0638 0.22 -2.0
693,475 - Psest_0638 0.22 -0.6
693,475 - Psest_0638 0.22 +0.5
693,475 - Psest_0638 0.22 -1.6
693,477 + Psest_0638 0.23 -0.4
693,477 + Psest_0638 0.23 -0.9
693,478 - Psest_0638 0.23 -1.9
693,732 + Psest_0638 0.82 -0.4
693,732 + Psest_0638 0.82 +0.1
693,732 + Psest_0638 0.82 +0.4
693,732 + Psest_0638 0.82 +0.5
693,733 - Psest_0638 0.82 -0.3
693,733 - Psest_0638 0.82 -0.6
693,733 - Psest_0638 0.82 +0.0
693,733 - Psest_0638 0.82 -1.1
693,733 - Psest_0638 0.82 +0.3
693,841 + -0.3
693,841 + -1.5
694,095 + Psest_0639 0.31 -0.6
694,096 - Psest_0639 0.31 +0.3
694,177 + Psest_0639 0.43 +0.2
694,178 - Psest_0639 0.43 -0.7
694,309 + Psest_0639 0.62 -0.3
694,309 + Psest_0639 0.62 -0.7
694,310 - Psest_0639 0.62 -2.0
694,378 + Psest_0639 0.72 -0.3
694,378 + Psest_0639 0.72 -2.0
694,378 + Psest_0639 0.72 -0.5
694,379 - Psest_0639 0.73 -0.4
694,379 - Psest_0639 0.73 +0.0
694,379 - Psest_0639 0.73 -0.8
694,379 - Psest_0639 0.73 +0.8
694,379 - Psest_0639 0.73 +0.9
694,401 + Psest_0639 0.76 -0.9
694,401 + Psest_0639 0.76 -0.3
694,401 + Psest_0639 0.76 -0.2
694,525 + +0.8
694,525 + -1.3
694,721 + +0.8
694,721 + +0.7
694,721 + +0.5
694,721 + -2.0
694,721 + -0.6
694,722 - +0.4
694,722 - +0.6
694,724 + +0.7
694,724 + -0.8
694,724 + +0.8
694,724 + -1.5
694,725 - -1.7
694,725 - +0.5
694,725 - -0.7
694,760 + Psest_0640 0.16 -1.4
694,760 + Psest_0640 0.16 -1.1
694,760 + Psest_0640 0.16 -1.4
694,811 + Psest_0640 0.27 -1.3
694,811 + Psest_0640 0.27 +1.0
694,811 + Psest_0640 0.27 +0.6
694,812 - Psest_0640 0.27 -1.2
694,812 - Psest_0640 0.27 +0.5
694,817 + Psest_0640 0.28 -2.0
694,817 + Psest_0640 0.28 +1.9
694,901 + Psest_0640 0.46 -1.6
694,901 + Psest_0640 0.46 -1.3
694,901 + Psest_0640 0.46 -0.2
694,902 - Psest_0640 0.46 +0.9
694,902 - Psest_0640 0.46 -0.2
695,120 + -0.2
695,120 + -0.8
695,219 + -0.2
695,219 + -1.0
695,219 + +0.5
695,219 + +1.8
695,220 - -1.5
695,220 - +0.3
695,300 + +1.7
695,301 - -0.7
695,301 - +0.0
695,301 - +0.9
695,302 + -0.0
695,302 + -0.6
695,303 - -0.3
695,303 - +0.2
695,350 + -1.3
695,350 + -2.6
695,350 + -0.7
695,350 + -1.6
695,350 + -0.7
695,389 - +1.7
695,389 - -1.1

Or see this region's nucleotide sequence