Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3502

Experiment: Thallium(I) acetate 0.09 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3501 and Psest_3502 are separated by 53 nucleotidesPsest_3502 and Psest_3503 are separated by 105 nucleotides Psest_3501: Psest_3501 - Deacetylases, including yeast histone deacetylase and acetoin utilization protein, at 3,672,842 to 3,673,762 _3501 Psest_3502: Psest_3502 - flavoprotein, HI0933 family/uncharacterized flavoprotein, PP_4765 family, at 3,673,816 to 3,675,048 _3502 Psest_3503: Psest_3503 - hypothetical protein, at 3,675,154 to 3,677,052 _3503 Position (kb) 3673 3674 3675 3676Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3672.872 kb on + strandat 3672.872 kb on + strandat 3672.873 kb on - strandat 3672.873 kb on - strandat 3672.873 kb on - strandat 3672.973 kb on - strand, within Psest_3501at 3672.988 kb on - strand, within Psest_3501at 3673.029 kb on - strand, within Psest_3501at 3673.029 kb on - strand, within Psest_3501at 3673.029 kb on - strand, within Psest_3501at 3673.029 kb on - strand, within Psest_3501at 3673.040 kb on + strand, within Psest_3501at 3673.041 kb on - strand, within Psest_3501at 3673.114 kb on + strand, within Psest_3501at 3673.115 kb on - strand, within Psest_3501at 3673.265 kb on + strand, within Psest_3501at 3673.265 kb on + strand, within Psest_3501at 3673.265 kb on + strand, within Psest_3501at 3673.266 kb on - strand, within Psest_3501at 3673.266 kb on - strand, within Psest_3501at 3673.266 kb on - strand, within Psest_3501at 3673.266 kb on - strand, within Psest_3501at 3673.429 kb on + strand, within Psest_3501at 3673.429 kb on + strand, within Psest_3501at 3673.464 kb on - strand, within Psest_3501at 3673.464 kb on - strand, within Psest_3501at 3673.493 kb on + strand, within Psest_3501at 3673.493 kb on + strand, within Psest_3501at 3673.494 kb on - strand, within Psest_3501at 3673.494 kb on - strand, within Psest_3501at 3673.494 kb on - strand, within Psest_3501at 3673.494 kb on - strand, within Psest_3501at 3673.508 kb on + strand, within Psest_3501at 3673.508 kb on + strand, within Psest_3501at 3673.778 kb on + strandat 3673.922 kb on - strandat 3673.999 kb on + strand, within Psest_3502at 3674.260 kb on - strand, within Psest_3502at 3674.563 kb on + strand, within Psest_3502at 3674.563 kb on + strand, within Psest_3502at 3674.564 kb on - strandat 3674.651 kb on + strand, within Psest_3502at 3674.652 kb on - strand, within Psest_3502at 3675.046 kb on + strandat 3675.047 kb on - strandat 3675.076 kb on + strandat 3675.077 kb on - strandat 3675.265 kb on + strandat 3675.406 kb on + strand, within Psest_3503at 3675.407 kb on - strand, within Psest_3503at 3675.457 kb on + strand, within Psest_3503at 3675.458 kb on - strand, within Psest_3503at 3675.571 kb on + strand, within Psest_3503at 3675.572 kb on - strand, within Psest_3503at 3675.578 kb on - strand, within Psest_3503at 3675.578 kb on - strand, within Psest_3503at 3675.578 kb on - strand, within Psest_3503at 3675.687 kb on + strand, within Psest_3503at 3675.687 kb on + strand, within Psest_3503at 3675.688 kb on - strand, within Psest_3503at 3675.688 kb on - strand, within Psest_3503at 3675.688 kb on - strand, within Psest_3503at 3675.688 kb on - strand, within Psest_3503at 3675.733 kb on + strand, within Psest_3503at 3675.733 kb on + strand, within Psest_3503at 3675.733 kb on + strand, within Psest_3503at 3675.733 kb on + strand, within Psest_3503at 3675.733 kb on + strand, within Psest_3503at 3675.733 kb on + strand, within Psest_3503at 3675.733 kb on + strand, within Psest_3503at 3675.733 kb on + strand, within Psest_3503at 3675.734 kb on - strand, within Psest_3503at 3675.734 kb on - strand, within Psest_3503at 3675.734 kb on - strand, within Psest_3503at 3675.734 kb on - strand, within Psest_3503at 3675.734 kb on - strand, within Psest_3503at 3675.734 kb on - strand, within Psest_3503at 3675.734 kb on - strand, within Psest_3503at 3675.734 kb on - strand, within Psest_3503at 3675.734 kb on - strand, within Psest_3503at 3675.734 kb on - strand, within Psest_3503at 3675.734 kb on - strand, within Psest_3503at 3676.015 kb on + strand, within Psest_3503at 3676.040 kb on - strand, within Psest_3503at 3676.040 kb on - strand, within Psest_3503

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.09 mg/ml
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3,672,872 + -3.0
3,672,872 + -1.3
3,672,873 - +0.3
3,672,873 - +0.6
3,672,873 - -0.0
3,672,973 - Psest_3501 0.14 +0.3
3,672,988 - Psest_3501 0.16 -0.5
3,673,029 - Psest_3501 0.20 -1.9
3,673,029 - Psest_3501 0.20 -0.6
3,673,029 - Psest_3501 0.20 -0.1
3,673,029 - Psest_3501 0.20 +1.1
3,673,040 + Psest_3501 0.21 -2.4
3,673,041 - Psest_3501 0.22 -0.4
3,673,114 + Psest_3501 0.30 -1.0
3,673,115 - Psest_3501 0.30 +0.4
3,673,265 + Psest_3501 0.46 +0.9
3,673,265 + Psest_3501 0.46 +0.3
3,673,265 + Psest_3501 0.46 -1.0
3,673,266 - Psest_3501 0.46 -3.5
3,673,266 - Psest_3501 0.46 -0.1
3,673,266 - Psest_3501 0.46 +0.0
3,673,266 - Psest_3501 0.46 -0.1
3,673,429 + Psest_3501 0.64 -1.9
3,673,429 + Psest_3501 0.64 +0.3
3,673,464 - Psest_3501 0.68 -0.6
3,673,464 - Psest_3501 0.68 +2.1
3,673,493 + Psest_3501 0.71 +1.0
3,673,493 + Psest_3501 0.71 -1.5
3,673,494 - Psest_3501 0.71 -1.6
3,673,494 - Psest_3501 0.71 +0.1
3,673,494 - Psest_3501 0.71 +0.7
3,673,494 - Psest_3501 0.71 -1.1
3,673,508 + Psest_3501 0.72 -1.0
3,673,508 + Psest_3501 0.72 -1.0
3,673,778 + -0.1
3,673,922 - +0.5
3,673,999 + Psest_3502 0.15 -1.3
3,674,260 - Psest_3502 0.36 -0.9
3,674,563 + Psest_3502 0.61 +1.6
3,674,563 + Psest_3502 0.61 +3.2
3,674,564 - +0.7
3,674,651 + Psest_3502 0.68 +2.0
3,674,652 - Psest_3502 0.68 -0.7
3,675,046 + -0.4
3,675,047 - +0.7
3,675,076 + +0.4
3,675,077 - -0.4
3,675,265 + +0.1
3,675,406 + Psest_3503 0.13 +0.5
3,675,407 - Psest_3503 0.13 +1.6
3,675,457 + Psest_3503 0.16 -0.2
3,675,458 - Psest_3503 0.16 -0.6
3,675,571 + Psest_3503 0.22 -3.1
3,675,572 - Psest_3503 0.22 -1.7
3,675,578 - Psest_3503 0.22 +0.2
3,675,578 - Psest_3503 0.22 -0.1
3,675,578 - Psest_3503 0.22 +0.9
3,675,687 + Psest_3503 0.28 +1.2
3,675,687 + Psest_3503 0.28 -1.0
3,675,688 - Psest_3503 0.28 +0.1
3,675,688 - Psest_3503 0.28 -0.3
3,675,688 - Psest_3503 0.28 +1.8
3,675,688 - Psest_3503 0.28 -0.7
3,675,733 + Psest_3503 0.30 +0.9
3,675,733 + Psest_3503 0.30 +0.3
3,675,733 + Psest_3503 0.30 -0.0
3,675,733 + Psest_3503 0.30 -0.7
3,675,733 + Psest_3503 0.30 +0.1
3,675,733 + Psest_3503 0.30 +1.7
3,675,733 + Psest_3503 0.30 -0.0
3,675,733 + Psest_3503 0.30 +1.6
3,675,734 - Psest_3503 0.31 -1.4
3,675,734 - Psest_3503 0.31 +2.5
3,675,734 - Psest_3503 0.31 -1.0
3,675,734 - Psest_3503 0.31 +0.2
3,675,734 - Psest_3503 0.31 +0.6
3,675,734 - Psest_3503 0.31 +1.4
3,675,734 - Psest_3503 0.31 +0.5
3,675,734 - Psest_3503 0.31 -0.3
3,675,734 - Psest_3503 0.31 +0.0
3,675,734 - Psest_3503 0.31 +0.3
3,675,734 - Psest_3503 0.31 +0.3
3,676,015 + Psest_3503 0.45 -2.0
3,676,040 - Psest_3503 0.47 -0.9
3,676,040 - Psest_3503 0.47 -0.0

Or see this region's nucleotide sequence