Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2982

Experiment: Thallium(I) acetate 0.09 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2980 and Psest_2981 are separated by 22 nucleotidesPsest_2981 and Psest_2982 are separated by 140 nucleotidesPsest_2982 and Psest_2983 are separated by 335 nucleotidesPsest_2983 and Psest_2984 are separated by 51 nucleotides Psest_2980: Psest_2980 - oxaloacetate decarboxylase alpha subunit, at 3,171,704 to 3,173,482 _2980 Psest_2981: Psest_2981 - sodium pump decarboxylases, gamma subunit, at 3,173,505 to 3,173,747 _2981 Psest_2982: Psest_2982 - Mg2+ transporter (mgtE), at 3,173,888 to 3,175,324 _2982 Psest_2983: Psest_2983 - hypothetical protein, at 3,175,660 to 3,176,142 _2983 Psest_2984: Psest_2984 - tRNA_Arg_ACG, at 3,176,194 to 3,176,270 _2984 Position (kb) 3173 3174 3175 3176Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3172.921 kb on + strand, within Psest_2980at 3172.922 kb on - strand, within Psest_2980at 3172.922 kb on - strand, within Psest_2980at 3172.923 kb on + strand, within Psest_2980at 3172.923 kb on + strand, within Psest_2980at 3172.923 kb on + strand, within Psest_2980at 3172.923 kb on + strand, within Psest_2980at 3172.924 kb on - strand, within Psest_2980at 3172.924 kb on - strand, within Psest_2980at 3172.924 kb on - strand, within Psest_2980at 3172.924 kb on - strand, within Psest_2980at 3173.037 kb on + strand, within Psest_2980at 3173.255 kb on - strand, within Psest_2980at 3173.309 kb on - strandat 3173.309 kb on - strandat 3173.470 kb on + strandat 3173.638 kb on + strand, within Psest_2981at 3173.638 kb on + strand, within Psest_2981at 3173.638 kb on + strand, within Psest_2981at 3173.796 kb on - strandat 3173.889 kb on + strandat 3173.890 kb on - strandat 3175.378 kb on - strandat 3175.378 kb on - strandat 3175.378 kb on - strandat 3175.417 kb on - strandat 3175.472 kb on - strandat 3175.472 kb on - strandat 3175.472 kb on - strandat 3175.472 kb on - strandat 3175.472 kb on - strandat 3175.614 kb on + strandat 3175.614 kb on + strandat 3175.615 kb on - strandat 3175.615 kb on - strandat 3175.668 kb on - strandat 3175.673 kb on + strandat 3175.673 kb on + strandat 3175.673 kb on + strandat 3175.674 kb on - strandat 3175.674 kb on - strandat 3175.694 kb on + strandat 3175.695 kb on - strandat 3176.039 kb on + strand, within Psest_2983at 3176.039 kb on + strand, within Psest_2983at 3176.039 kb on + strand, within Psest_2983at 3176.245 kb on - strand, within Psest_2984at 3176.263 kb on - strandat 3176.263 kb on - strandat 3176.263 kb on - strandat 3176.273 kb on - strandat 3176.273 kb on - strandat 3176.273 kb on - strandat 3176.273 kb on - strandat 3176.273 kb on - strandat 3176.273 kb on - strandat 3176.273 kb on - strandat 3176.284 kb on - strandat 3176.284 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.09 mg/ml
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3,172,921 + Psest_2980 0.68 +0.1
3,172,922 - Psest_2980 0.68 +1.2
3,172,922 - Psest_2980 0.68 -0.3
3,172,923 + Psest_2980 0.69 -0.7
3,172,923 + Psest_2980 0.69 -0.0
3,172,923 + Psest_2980 0.69 -0.3
3,172,923 + Psest_2980 0.69 -0.9
3,172,924 - Psest_2980 0.69 -1.3
3,172,924 - Psest_2980 0.69 +0.2
3,172,924 - Psest_2980 0.69 -1.0
3,172,924 - Psest_2980 0.69 -0.6
3,173,037 + Psest_2980 0.75 -0.6
3,173,255 - Psest_2980 0.87 -0.8
3,173,309 - +1.7
3,173,309 - +2.2
3,173,470 + -1.7
3,173,638 + Psest_2981 0.55 -1.2
3,173,638 + Psest_2981 0.55 -0.5
3,173,638 + Psest_2981 0.55 -0.6
3,173,796 - -1.9
3,173,889 + -0.0
3,173,890 - -1.0
3,175,378 - -1.9
3,175,378 - -1.0
3,175,378 - +1.9
3,175,417 - +0.5
3,175,472 - +0.7
3,175,472 - -1.1
3,175,472 - -1.3
3,175,472 - +1.1
3,175,472 - +0.7
3,175,614 + +0.2
3,175,614 + +2.4
3,175,615 - -1.8
3,175,615 - -0.1
3,175,668 - -1.4
3,175,673 + -2.8
3,175,673 + +0.6
3,175,673 + -0.5
3,175,674 - +2.4
3,175,674 - -0.3
3,175,694 + -0.2
3,175,695 - -0.5
3,176,039 + Psest_2983 0.78 -0.3
3,176,039 + Psest_2983 0.78 +1.7
3,176,039 + Psest_2983 0.78 +1.4
3,176,245 - Psest_2984 0.66 +0.4
3,176,263 - +1.5
3,176,263 - -1.5
3,176,263 - -0.8
3,176,273 - +0.2
3,176,273 - -1.5
3,176,273 - +0.1
3,176,273 - -0.1
3,176,273 - +1.4
3,176,273 - +0.1
3,176,273 - -0.7
3,176,284 - +0.2
3,176,284 - +0.2

Or see this region's nucleotide sequence