Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2562

Experiment: Thallium(I) acetate 0.09 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2560 and Psest_2561 are separated by 9 nucleotidesPsest_2561 and Psest_2562 are separated by 1 nucleotidesPsest_2562 and Psest_2563 are separated by 49 nucleotides Psest_2560: Psest_2560 - Zinc metalloprotease (elastase), at 2,741,818 to 2,742,861 _2560 Psest_2561: Psest_2561 - hypothetical protein, at 2,742,871 to 2,743,203 _2561 Psest_2562: Psest_2562 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 2,743,205 to 2,745,541 _2562 Psest_2563: Psest_2563 - Arabinose efflux permease, at 2,745,591 to 2,746,826 _2563 Position (kb) 2743 2744 2745 2746Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2742.353 kb on - strand, within Psest_2560at 2742.353 kb on - strand, within Psest_2560at 2742.353 kb on - strand, within Psest_2560at 2742.529 kb on + strand, within Psest_2560at 2742.529 kb on + strand, within Psest_2560at 2742.529 kb on + strand, within Psest_2560at 2742.618 kb on + strand, within Psest_2560at 2742.618 kb on + strand, within Psest_2560at 2742.619 kb on - strand, within Psest_2560at 2742.646 kb on + strand, within Psest_2560at 2742.647 kb on - strand, within Psest_2560at 2742.647 kb on - strand, within Psest_2560at 2742.674 kb on - strand, within Psest_2560at 2742.848 kb on + strandat 2742.859 kb on + strandat 2742.912 kb on - strand, within Psest_2561at 2743.201 kb on + strandat 2743.337 kb on + strandat 2743.338 kb on - strandat 2743.482 kb on + strand, within Psest_2562at 2743.482 kb on + strand, within Psest_2562at 2743.482 kb on + strand, within Psest_2562at 2743.590 kb on - strand, within Psest_2562at 2743.590 kb on - strand, within Psest_2562at 2743.651 kb on + strand, within Psest_2562at 2743.651 kb on + strand, within Psest_2562at 2743.651 kb on + strand, within Psest_2562at 2743.651 kb on + strand, within Psest_2562at 2743.651 kb on + strand, within Psest_2562at 2743.651 kb on + strand, within Psest_2562at 2743.651 kb on + strand, within Psest_2562at 2743.651 kb on + strand, within Psest_2562at 2743.652 kb on - strand, within Psest_2562at 2743.652 kb on - strand, within Psest_2562at 2743.652 kb on - strand, within Psest_2562at 2743.921 kb on - strand, within Psest_2562at 2744.052 kb on + strand, within Psest_2562at 2744.052 kb on + strand, within Psest_2562at 2744.052 kb on + strand, within Psest_2562at 2744.052 kb on + strand, within Psest_2562at 2744.053 kb on - strand, within Psest_2562at 2744.053 kb on - strand, within Psest_2562at 2744.118 kb on - strand, within Psest_2562at 2744.403 kb on + strand, within Psest_2562at 2744.404 kb on - strand, within Psest_2562at 2744.404 kb on - strand, within Psest_2562at 2744.404 kb on - strand, within Psest_2562at 2744.404 kb on - strand, within Psest_2562at 2744.444 kb on - strand, within Psest_2562at 2744.520 kb on + strand, within Psest_2562at 2744.617 kb on + strand, within Psest_2562at 2744.638 kb on - strand, within Psest_2562at 2744.718 kb on + strand, within Psest_2562at 2744.718 kb on + strand, within Psest_2562at 2744.718 kb on + strand, within Psest_2562at 2744.719 kb on - strand, within Psest_2562at 2744.719 kb on - strand, within Psest_2562at 2744.719 kb on - strand, within Psest_2562at 2744.719 kb on - strand, within Psest_2562at 2744.779 kb on - strand, within Psest_2562at 2744.779 kb on - strand, within Psest_2562at 2744.779 kb on - strand, within Psest_2562at 2744.779 kb on - strand, within Psest_2562at 2744.779 kb on - strand, within Psest_2562at 2745.121 kb on + strand, within Psest_2562at 2745.121 kb on + strand, within Psest_2562at 2745.122 kb on - strand, within Psest_2562at 2745.122 kb on - strand, within Psest_2562at 2745.847 kb on - strand, within Psest_2563at 2746.103 kb on - strand, within Psest_2563at 2746.115 kb on + strand, within Psest_2563at 2746.115 kb on + strand, within Psest_2563at 2746.115 kb on + strand, within Psest_2563at 2746.115 kb on + strand, within Psest_2563at 2746.115 kb on + strand, within Psest_2563at 2746.115 kb on + strand, within Psest_2563at 2746.115 kb on + strand, within Psest_2563at 2746.116 kb on - strand, within Psest_2563at 2746.116 kb on - strand, within Psest_2563at 2746.116 kb on - strand, within Psest_2563at 2746.116 kb on - strand, within Psest_2563at 2746.171 kb on + strand, within Psest_2563at 2746.171 kb on + strand, within Psest_2563at 2746.171 kb on + strand, within Psest_2563at 2746.171 kb on + strand, within Psest_2563at 2746.171 kb on + strand, within Psest_2563at 2746.172 kb on - strand, within Psest_2563at 2746.182 kb on + strand, within Psest_2563at 2746.183 kb on - strand, within Psest_2563at 2746.275 kb on + strand, within Psest_2563at 2746.276 kb on - strand, within Psest_2563at 2746.276 kb on - strand, within Psest_2563at 2746.276 kb on - strand, within Psest_2563at 2746.282 kb on + strand, within Psest_2563at 2746.282 kb on + strand, within Psest_2563at 2746.283 kb on - strand, within Psest_2563at 2746.283 kb on - strand, within Psest_2563

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.09 mg/ml
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2,742,353 - Psest_2560 0.51 +1.2
2,742,353 - Psest_2560 0.51 +1.7
2,742,353 - Psest_2560 0.51 -1.4
2,742,529 + Psest_2560 0.68 -0.4
2,742,529 + Psest_2560 0.68 +0.7
2,742,529 + Psest_2560 0.68 -1.1
2,742,618 + Psest_2560 0.77 -0.6
2,742,618 + Psest_2560 0.77 -2.3
2,742,619 - Psest_2560 0.77 -0.6
2,742,646 + Psest_2560 0.79 +0.6
2,742,647 - Psest_2560 0.79 -0.3
2,742,647 - Psest_2560 0.79 +1.6
2,742,674 - Psest_2560 0.82 +1.0
2,742,848 + +1.0
2,742,859 + +0.3
2,742,912 - Psest_2561 0.12 +0.4
2,743,201 + +1.3
2,743,337 + -1.5
2,743,338 - -1.1
2,743,482 + Psest_2562 0.12 -0.4
2,743,482 + Psest_2562 0.12 +0.2
2,743,482 + Psest_2562 0.12 -1.3
2,743,590 - Psest_2562 0.16 +0.2
2,743,590 - Psest_2562 0.16 +0.2
2,743,651 + Psest_2562 0.19 -1.6
2,743,651 + Psest_2562 0.19 +0.6
2,743,651 + Psest_2562 0.19 +0.4
2,743,651 + Psest_2562 0.19 +3.0
2,743,651 + Psest_2562 0.19 +0.5
2,743,651 + Psest_2562 0.19 +0.1
2,743,651 + Psest_2562 0.19 -0.8
2,743,651 + Psest_2562 0.19 -1.8
2,743,652 - Psest_2562 0.19 -1.5
2,743,652 - Psest_2562 0.19 +1.6
2,743,652 - Psest_2562 0.19 -0.4
2,743,921 - Psest_2562 0.31 +1.6
2,744,052 + Psest_2562 0.36 +0.9
2,744,052 + Psest_2562 0.36 -0.5
2,744,052 + Psest_2562 0.36 +1.7
2,744,052 + Psest_2562 0.36 -0.3
2,744,053 - Psest_2562 0.36 -1.1
2,744,053 - Psest_2562 0.36 +0.8
2,744,118 - Psest_2562 0.39 +0.6
2,744,403 + Psest_2562 0.51 -0.3
2,744,404 - Psest_2562 0.51 -0.9
2,744,404 - Psest_2562 0.51 +0.7
2,744,404 - Psest_2562 0.51 -1.9
2,744,404 - Psest_2562 0.51 +1.2
2,744,444 - Psest_2562 0.53 +1.1
2,744,520 + Psest_2562 0.56 +1.5
2,744,617 + Psest_2562 0.60 +0.4
2,744,638 - Psest_2562 0.61 +0.3
2,744,718 + Psest_2562 0.65 +0.6
2,744,718 + Psest_2562 0.65 -1.4
2,744,718 + Psest_2562 0.65 +0.4
2,744,719 - Psest_2562 0.65 +0.2
2,744,719 - Psest_2562 0.65 -0.3
2,744,719 - Psest_2562 0.65 -0.1
2,744,719 - Psest_2562 0.65 +0.0
2,744,779 - Psest_2562 0.67 -1.7
2,744,779 - Psest_2562 0.67 -1.9
2,744,779 - Psest_2562 0.67 -0.6
2,744,779 - Psest_2562 0.67 -2.7
2,744,779 - Psest_2562 0.67 +0.4
2,745,121 + Psest_2562 0.82 +0.3
2,745,121 + Psest_2562 0.82 -0.2
2,745,122 - Psest_2562 0.82 +1.9
2,745,122 - Psest_2562 0.82 +0.9
2,745,847 - Psest_2563 0.21 +0.5
2,746,103 - Psest_2563 0.41 -2.6
2,746,115 + Psest_2563 0.42 -0.2
2,746,115 + Psest_2563 0.42 +1.0
2,746,115 + Psest_2563 0.42 +0.4
2,746,115 + Psest_2563 0.42 +0.8
2,746,115 + Psest_2563 0.42 -1.4
2,746,115 + Psest_2563 0.42 -0.9
2,746,115 + Psest_2563 0.42 -0.3
2,746,116 - Psest_2563 0.42 +1.0
2,746,116 - Psest_2563 0.42 +0.9
2,746,116 - Psest_2563 0.42 -1.2
2,746,116 - Psest_2563 0.42 -2.6
2,746,171 + Psest_2563 0.47 +0.7
2,746,171 + Psest_2563 0.47 -1.6
2,746,171 + Psest_2563 0.47 -0.1
2,746,171 + Psest_2563 0.47 -0.3
2,746,171 + Psest_2563 0.47 -2.1
2,746,172 - Psest_2563 0.47 +0.5
2,746,182 + Psest_2563 0.48 +1.8
2,746,183 - Psest_2563 0.48 +0.6
2,746,275 + Psest_2563 0.55 +1.1
2,746,276 - Psest_2563 0.55 +0.8
2,746,276 - Psest_2563 0.55 +0.5
2,746,276 - Psest_2563 0.55 -0.3
2,746,282 + Psest_2563 0.56 -0.7
2,746,282 + Psest_2563 0.56 -0.1
2,746,283 - Psest_2563 0.56 -2.7
2,746,283 - Psest_2563 0.56 +0.2

Or see this region's nucleotide sequence