Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2448

Experiment: Thallium(I) acetate 0.09 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2446 and Psest_2447 are separated by 11 nucleotidesPsest_2447 and Psest_2448 are separated by 186 nucleotidesPsest_2448 and Psest_2449 are separated by 71 nucleotidesPsest_2449 and Psest_2450 are separated by 239 nucleotides Psest_2446: Psest_2446 - acetyl-CoA acetyltransferases, at 2,615,025 to 2,616,209 _2446 Psest_2447: Psest_2447 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 2,616,221 to 2,616,988 _2447 Psest_2448: Psest_2448 - AraC-type DNA-binding domain-containing proteins, at 2,617,175 to 2,618,242 _2448 Psest_2449: Psest_2449 - Predicted membrane protein, at 2,618,314 to 2,618,751 _2449 Psest_2450: Psest_2450 - hypothetical protein, at 2,618,991 to 2,619,446 _2450 Position (kb) 2617 2618 2619Strain fitness (log2 ratio) -2 -1 0 1 2at 2616.190 kb on - strandat 2616.222 kb on + strandat 2616.223 kb on - strandat 2616.313 kb on - strand, within Psest_2447at 2616.410 kb on + strand, within Psest_2447at 2616.508 kb on - strand, within Psest_2447at 2616.508 kb on - strand, within Psest_2447at 2616.968 kb on + strandat 2616.968 kb on + strandat 2616.969 kb on - strandat 2616.969 kb on - strandat 2616.969 kb on - strandat 2616.969 kb on - strandat 2617.033 kb on - strandat 2617.225 kb on + strandat 2617.251 kb on + strandat 2617.252 kb on - strandat 2617.526 kb on + strand, within Psest_2448at 2617.526 kb on + strand, within Psest_2448at 2617.527 kb on - strand, within Psest_2448at 2617.680 kb on + strand, within Psest_2448at 2617.681 kb on - strand, within Psest_2448at 2617.681 kb on - strand, within Psest_2448at 2617.779 kb on + strand, within Psest_2448at 2617.779 kb on + strand, within Psest_2448at 2617.779 kb on + strand, within Psest_2448at 2617.780 kb on - strand, within Psest_2448at 2618.040 kb on + strandat 2618.351 kb on + strandat 2618.352 kb on - strandat 2618.562 kb on - strand, within Psest_2449at 2618.562 kb on - strand, within Psest_2449at 2618.637 kb on + strand, within Psest_2449at 2618.637 kb on + strand, within Psest_2449at 2618.638 kb on - strand, within Psest_2449at 2618.638 kb on - strand, within Psest_2449at 2618.638 kb on - strand, within Psest_2449at 2618.638 kb on - strand, within Psest_2449at 2618.638 kb on - strand, within Psest_2449at 2618.638 kb on - strand, within Psest_2449at 2618.639 kb on + strand, within Psest_2449at 2618.689 kb on + strand, within Psest_2449at 2618.692 kb on + strand, within Psest_2449at 2618.792 kb on + strandat 2618.793 kb on - strandat 2618.992 kb on + strandat 2618.993 kb on - strandat 2618.993 kb on - strandat 2619.149 kb on + strand, within Psest_2450at 2619.184 kb on + strand, within Psest_2450at 2619.230 kb on - strand, within Psest_2450at 2619.235 kb on + strand, within Psest_2450at 2619.236 kb on - strand, within Psest_2450at 2619.236 kb on - strand, within Psest_2450at 2619.236 kb on - strand, within Psest_2450at 2619.236 kb on - strand, within Psest_2450

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.09 mg/ml
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2,616,190 - +0.4
2,616,222 + -0.8
2,616,223 - +0.3
2,616,313 - Psest_2447 0.12 +0.3
2,616,410 + Psest_2447 0.25 +0.9
2,616,508 - Psest_2447 0.37 -1.2
2,616,508 - Psest_2447 0.37 +0.0
2,616,968 + -0.8
2,616,968 + +0.4
2,616,969 - +0.6
2,616,969 - +0.1
2,616,969 - +0.4
2,616,969 - +0.6
2,617,033 - +1.4
2,617,225 + -1.4
2,617,251 + +0.7
2,617,252 - -0.9
2,617,526 + Psest_2448 0.33 -0.9
2,617,526 + Psest_2448 0.33 -1.1
2,617,527 - Psest_2448 0.33 +0.6
2,617,680 + Psest_2448 0.47 -1.4
2,617,681 - Psest_2448 0.47 -2.6
2,617,681 - Psest_2448 0.47 -1.3
2,617,779 + Psest_2448 0.57 +0.4
2,617,779 + Psest_2448 0.57 -1.1
2,617,779 + Psest_2448 0.57 -1.2
2,617,780 - Psest_2448 0.57 +0.2
2,618,040 + -0.9
2,618,351 + -0.6
2,618,352 - +1.4
2,618,562 - Psest_2449 0.57 +0.1
2,618,562 - Psest_2449 0.57 +0.4
2,618,637 + Psest_2449 0.74 +0.4
2,618,637 + Psest_2449 0.74 -0.2
2,618,638 - Psest_2449 0.74 +1.0
2,618,638 - Psest_2449 0.74 -0.9
2,618,638 - Psest_2449 0.74 +0.1
2,618,638 - Psest_2449 0.74 -1.9
2,618,638 - Psest_2449 0.74 -1.5
2,618,638 - Psest_2449 0.74 +0.4
2,618,639 + Psest_2449 0.74 +1.0
2,618,689 + Psest_2449 0.86 +0.3
2,618,692 + Psest_2449 0.86 +0.4
2,618,792 + +0.1
2,618,793 - +2.1
2,618,992 + -0.5
2,618,993 - -0.1
2,618,993 - -0.2
2,619,149 + Psest_2450 0.35 +0.2
2,619,184 + Psest_2450 0.42 +0.6
2,619,230 - Psest_2450 0.52 +0.6
2,619,235 + Psest_2450 0.54 +2.2
2,619,236 - Psest_2450 0.54 +0.6
2,619,236 - Psest_2450 0.54 +0.7
2,619,236 - Psest_2450 0.54 +1.2
2,619,236 - Psest_2450 0.54 +2.1

Or see this region's nucleotide sequence