Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1583

Experiment: Thallium(I) acetate 0.09 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1581 and Psest_1582 are separated by 131 nucleotidesPsest_1582 and Psest_1583 are separated by 97 nucleotidesPsest_1583 and Psest_1584 are separated by 163 nucleotides Psest_1581: Psest_1581 - Acetyltransferases, at 1,685,891 to 1,686,391 _1581 Psest_1582: Psest_1582 - Protein of unknown function (DUF3087)., at 1,686,523 to 1,687,062 _1582 Psest_1583: Psest_1583 - outer membrane porin, OprD family., at 1,687,160 to 1,688,410 _1583 Psest_1584: Psest_1584 - Arabinose efflux permease, at 1,688,574 to 1,689,932 _1584 Position (kb) 1687 1688 1689Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1686.207 kb on + strand, within Psest_1581at 1686.207 kb on + strand, within Psest_1581at 1686.208 kb on - strand, within Psest_1581at 1686.208 kb on - strand, within Psest_1581at 1686.208 kb on - strand, within Psest_1581at 1686.243 kb on + strand, within Psest_1581at 1686.243 kb on + strand, within Psest_1581at 1686.243 kb on + strand, within Psest_1581at 1686.243 kb on + strand, within Psest_1581at 1686.244 kb on - strand, within Psest_1581at 1686.244 kb on - strand, within Psest_1581at 1686.244 kb on - strand, within Psest_1581at 1686.244 kb on - strand, within Psest_1581at 1686.244 kb on - strand, within Psest_1581at 1686.244 kb on - strand, within Psest_1581at 1686.342 kb on + strandat 1686.342 kb on + strandat 1686.342 kb on + strandat 1686.342 kb on + strandat 1686.342 kb on + strandat 1686.342 kb on + strandat 1686.342 kb on + strandat 1686.342 kb on + strandat 1686.342 kb on + strandat 1686.342 kb on + strandat 1686.342 kb on + strandat 1686.342 kb on + strandat 1686.342 kb on + strandat 1686.342 kb on + strandat 1686.342 kb on + strandat 1686.342 kb on + strandat 1686.343 kb on - strandat 1686.343 kb on - strandat 1686.343 kb on - strandat 1686.343 kb on - strandat 1686.343 kb on - strandat 1686.343 kb on - strandat 1686.343 kb on - strandat 1686.343 kb on - strandat 1686.343 kb on - strandat 1686.343 kb on - strandat 1686.775 kb on + strand, within Psest_1582at 1686.776 kb on - strand, within Psest_1582at 1686.883 kb on + strand, within Psest_1582at 1686.884 kb on - strand, within Psest_1582at 1686.884 kb on - strand, within Psest_1582at 1687.179 kb on + strandat 1687.179 kb on + strandat 1687.180 kb on - strandat 1687.180 kb on - strandat 1687.180 kb on - strandat 1687.180 kb on - strandat 1687.180 kb on - strandat 1687.180 kb on - strandat 1687.293 kb on + strand, within Psest_1583at 1687.293 kb on + strand, within Psest_1583at 1687.293 kb on + strand, within Psest_1583at 1687.293 kb on + strand, within Psest_1583at 1687.293 kb on + strand, within Psest_1583at 1687.293 kb on + strand, within Psest_1583at 1687.293 kb on + strand, within Psest_1583at 1687.293 kb on + strand, within Psest_1583at 1687.293 kb on + strand, within Psest_1583at 1687.293 kb on + strand, within Psest_1583at 1687.293 kb on + strand, within Psest_1583at 1687.294 kb on - strand, within Psest_1583at 1687.294 kb on - strand, within Psest_1583at 1687.294 kb on - strand, within Psest_1583at 1687.294 kb on - strand, within Psest_1583at 1687.294 kb on - strand, within Psest_1583at 1687.294 kb on - strand, within Psest_1583at 1687.294 kb on - strand, within Psest_1583at 1687.294 kb on - strand, within Psest_1583at 1687.294 kb on - strand, within Psest_1583at 1687.294 kb on - strand, within Psest_1583at 1687.294 kb on - strand, within Psest_1583at 1687.294 kb on - strand, within Psest_1583at 1687.294 kb on - strand, within Psest_1583at 1687.294 kb on - strand, within Psest_1583at 1687.294 kb on - strand, within Psest_1583at 1687.294 kb on - strand, within Psest_1583at 1687.416 kb on + strand, within Psest_1583at 1687.422 kb on + strand, within Psest_1583at 1687.489 kb on - strand, within Psest_1583at 1687.489 kb on - strand, within Psest_1583at 1687.489 kb on - strand, within Psest_1583at 1687.489 kb on - strand, within Psest_1583at 1687.489 kb on - strand, within Psest_1583at 1687.650 kb on + strand, within Psest_1583at 1687.650 kb on + strand, within Psest_1583at 1687.650 kb on + strand, within Psest_1583at 1687.693 kb on + strand, within Psest_1583at 1687.693 kb on + strand, within Psest_1583at 1687.693 kb on + strand, within Psest_1583at 1687.693 kb on + strand, within Psest_1583at 1687.693 kb on + strand, within Psest_1583at 1687.693 kb on + strand, within Psest_1583at 1687.693 kb on + strand, within Psest_1583at 1687.694 kb on - strand, within Psest_1583at 1687.694 kb on - strand, within Psest_1583at 1687.694 kb on - strand, within Psest_1583at 1687.694 kb on - strand, within Psest_1583at 1687.694 kb on - strand, within Psest_1583at 1687.694 kb on - strand, within Psest_1583at 1687.694 kb on - strand, within Psest_1583at 1687.696 kb on + strand, within Psest_1583at 1687.696 kb on + strand, within Psest_1583at 1687.726 kb on - strand, within Psest_1583at 1687.729 kb on + strand, within Psest_1583at 1687.729 kb on + strand, within Psest_1583at 1687.729 kb on + strand, within Psest_1583at 1687.730 kb on - strand, within Psest_1583at 1687.730 kb on - strand, within Psest_1583at 1687.749 kb on + strand, within Psest_1583at 1687.749 kb on + strand, within Psest_1583at 1687.752 kb on + strand, within Psest_1583at 1687.752 kb on + strand, within Psest_1583at 1687.753 kb on - strand, within Psest_1583at 1687.753 kb on - strand, within Psest_1583at 1687.753 kb on - strand, within Psest_1583at 1687.753 kb on - strand, within Psest_1583at 1687.753 kb on - strand, within Psest_1583at 1688.055 kb on + strand, within Psest_1583at 1688.056 kb on - strand, within Psest_1583at 1688.277 kb on + strand, within Psest_1583at 1688.277 kb on + strand, within Psest_1583at 1688.281 kb on - strand, within Psest_1583at 1688.281 kb on - strand, within Psest_1583at 1688.281 kb on - strand, within Psest_1583at 1688.417 kb on + strandat 1688.417 kb on + strandat 1688.731 kb on + strand, within Psest_1584at 1688.731 kb on + strand, within Psest_1584at 1688.732 kb on - strand, within Psest_1584at 1688.732 kb on - strand, within Psest_1584at 1688.732 kb on - strand, within Psest_1584at 1688.732 kb on - strand, within Psest_1584at 1688.732 kb on - strand, within Psest_1584at 1688.732 kb on - strand, within Psest_1584at 1688.732 kb on - strand, within Psest_1584at 1688.732 kb on - strand, within Psest_1584at 1688.824 kb on + strand, within Psest_1584at 1688.919 kb on + strand, within Psest_1584at 1688.919 kb on + strand, within Psest_1584at 1688.919 kb on + strand, within Psest_1584at 1688.919 kb on + strand, within Psest_1584at 1688.920 kb on - strand, within Psest_1584at 1689.164 kb on - strand, within Psest_1584at 1689.164 kb on - strand, within Psest_1584at 1689.178 kb on + strand, within Psest_1584at 1689.178 kb on + strand, within Psest_1584at 1689.178 kb on + strand, within Psest_1584at 1689.179 kb on - strand, within Psest_1584at 1689.179 kb on - strand, within Psest_1584at 1689.179 kb on - strand, within Psest_1584at 1689.179 kb on - strand, within Psest_1584

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.09 mg/ml
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1,686,207 + Psest_1581 0.63 -1.9
1,686,207 + Psest_1581 0.63 -0.0
1,686,208 - Psest_1581 0.63 -0.4
1,686,208 - Psest_1581 0.63 +0.4
1,686,208 - Psest_1581 0.63 -0.5
1,686,243 + Psest_1581 0.70 +0.1
1,686,243 + Psest_1581 0.70 +0.4
1,686,243 + Psest_1581 0.70 -0.5
1,686,243 + Psest_1581 0.70 +0.4
1,686,244 - Psest_1581 0.70 -0.1
1,686,244 - Psest_1581 0.70 -0.4
1,686,244 - Psest_1581 0.70 -0.1
1,686,244 - Psest_1581 0.70 +0.9
1,686,244 - Psest_1581 0.70 -0.5
1,686,244 - Psest_1581 0.70 -0.9
1,686,342 + -0.5
1,686,342 + -0.3
1,686,342 + -0.1
1,686,342 + +0.7
1,686,342 + +0.1
1,686,342 + -2.4
1,686,342 + +2.2
1,686,342 + -0.6
1,686,342 + -3.8
1,686,342 + -0.2
1,686,342 + +1.0
1,686,342 + -1.2
1,686,342 + +0.0
1,686,342 + +0.5
1,686,342 + -0.6
1,686,342 + -0.4
1,686,343 - -1.2
1,686,343 - -0.2
1,686,343 - +0.8
1,686,343 - +2.7
1,686,343 - +0.9
1,686,343 - -1.5
1,686,343 - +1.7
1,686,343 - -0.2
1,686,343 - -1.6
1,686,343 - +0.6
1,686,775 + Psest_1582 0.47 +0.7
1,686,776 - Psest_1582 0.47 +0.7
1,686,883 + Psest_1582 0.67 +0.8
1,686,884 - Psest_1582 0.67 +0.6
1,686,884 - Psest_1582 0.67 +1.8
1,687,179 + -0.2
1,687,179 + -1.0
1,687,180 - +0.4
1,687,180 - -0.7
1,687,180 - +1.3
1,687,180 - +0.3
1,687,180 - +1.9
1,687,180 - +0.4
1,687,293 + Psest_1583 0.11 -0.4
1,687,293 + Psest_1583 0.11 -0.7
1,687,293 + Psest_1583 0.11 -0.1
1,687,293 + Psest_1583 0.11 -1.6
1,687,293 + Psest_1583 0.11 +0.3
1,687,293 + Psest_1583 0.11 -0.2
1,687,293 + Psest_1583 0.11 -1.1
1,687,293 + Psest_1583 0.11 +0.4
1,687,293 + Psest_1583 0.11 -2.8
1,687,293 + Psest_1583 0.11 +0.6
1,687,293 + Psest_1583 0.11 -0.7
1,687,294 - Psest_1583 0.11 -1.9
1,687,294 - Psest_1583 0.11 -0.5
1,687,294 - Psest_1583 0.11 +0.5
1,687,294 - Psest_1583 0.11 -2.4
1,687,294 - Psest_1583 0.11 +1.2
1,687,294 - Psest_1583 0.11 -1.1
1,687,294 - Psest_1583 0.11 -0.9
1,687,294 - Psest_1583 0.11 +0.5
1,687,294 - Psest_1583 0.11 +0.9
1,687,294 - Psest_1583 0.11 -1.8
1,687,294 - Psest_1583 0.11 -2.0
1,687,294 - Psest_1583 0.11 +0.6
1,687,294 - Psest_1583 0.11 +0.9
1,687,294 - Psest_1583 0.11 -0.9
1,687,294 - Psest_1583 0.11 -0.1
1,687,294 - Psest_1583 0.11 -0.2
1,687,416 + Psest_1583 0.20 -2.0
1,687,422 + Psest_1583 0.21 -0.1
1,687,489 - Psest_1583 0.26 +0.7
1,687,489 - Psest_1583 0.26 +0.2
1,687,489 - Psest_1583 0.26 +4.1
1,687,489 - Psest_1583 0.26 +3.3
1,687,489 - Psest_1583 0.26 +0.8
1,687,650 + Psest_1583 0.39 +0.2
1,687,650 + Psest_1583 0.39 -1.5
1,687,650 + Psest_1583 0.39 -1.6
1,687,693 + Psest_1583 0.43 -0.7
1,687,693 + Psest_1583 0.43 -1.0
1,687,693 + Psest_1583 0.43 -0.5
1,687,693 + Psest_1583 0.43 -0.8
1,687,693 + Psest_1583 0.43 +0.5
1,687,693 + Psest_1583 0.43 -1.1
1,687,693 + Psest_1583 0.43 +0.6
1,687,694 - Psest_1583 0.43 -0.2
1,687,694 - Psest_1583 0.43 +3.1
1,687,694 - Psest_1583 0.43 -0.4
1,687,694 - Psest_1583 0.43 -0.3
1,687,694 - Psest_1583 0.43 -1.5
1,687,694 - Psest_1583 0.43 +0.6
1,687,694 - Psest_1583 0.43 -1.5
1,687,696 + Psest_1583 0.43 -1.5
1,687,696 + Psest_1583 0.43 -1.1
1,687,726 - Psest_1583 0.45 -0.9
1,687,729 + Psest_1583 0.45 -0.6
1,687,729 + Psest_1583 0.45 -1.0
1,687,729 + Psest_1583 0.45 -1.6
1,687,730 - Psest_1583 0.46 -0.3
1,687,730 - Psest_1583 0.46 -0.7
1,687,749 + Psest_1583 0.47 -0.1
1,687,749 + Psest_1583 0.47 -0.3
1,687,752 + Psest_1583 0.47 -0.3
1,687,752 + Psest_1583 0.47 -0.7
1,687,753 - Psest_1583 0.47 -0.4
1,687,753 - Psest_1583 0.47 -0.1
1,687,753 - Psest_1583 0.47 +0.3
1,687,753 - Psest_1583 0.47 +1.1
1,687,753 - Psest_1583 0.47 -0.9
1,688,055 + Psest_1583 0.72 +1.0
1,688,056 - Psest_1583 0.72 +0.7
1,688,277 + Psest_1583 0.89 -1.0
1,688,277 + Psest_1583 0.89 -0.7
1,688,281 - Psest_1583 0.90 -0.8
1,688,281 - Psest_1583 0.90 -0.1
1,688,281 - Psest_1583 0.90 +1.0
1,688,417 + +0.5
1,688,417 + -1.1
1,688,731 + Psest_1584 0.12 +1.5
1,688,731 + Psest_1584 0.12 +1.1
1,688,732 - Psest_1584 0.12 -0.1
1,688,732 - Psest_1584 0.12 +0.8
1,688,732 - Psest_1584 0.12 -1.0
1,688,732 - Psest_1584 0.12 +0.5
1,688,732 - Psest_1584 0.12 +1.1
1,688,732 - Psest_1584 0.12 -1.8
1,688,732 - Psest_1584 0.12 -0.4
1,688,732 - Psest_1584 0.12 -0.5
1,688,824 + Psest_1584 0.18 -0.2
1,688,919 + Psest_1584 0.25 +0.5
1,688,919 + Psest_1584 0.25 -1.6
1,688,919 + Psest_1584 0.25 +0.1
1,688,919 + Psest_1584 0.25 -0.3
1,688,920 - Psest_1584 0.25 +2.0
1,689,164 - Psest_1584 0.43 -0.4
1,689,164 - Psest_1584 0.43 -0.2
1,689,178 + Psest_1584 0.44 +1.4
1,689,178 + Psest_1584 0.44 -0.4
1,689,178 + Psest_1584 0.44 +1.2
1,689,179 - Psest_1584 0.45 +1.4
1,689,179 - Psest_1584 0.45 +1.4
1,689,179 - Psest_1584 0.45 +0.3
1,689,179 - Psest_1584 0.45 +0.1

Or see this region's nucleotide sequence