Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1141

Experiment: Thallium(I) acetate 0.09 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1139 and Psest_1140 are separated by 45 nucleotidesPsest_1140 and Psest_1141 are separated by 4 nucleotidesPsest_1141 and Psest_1142 are separated by 155 nucleotidesPsest_1142 and Psest_1143 are separated by 90 nucleotides Psest_1139: Psest_1139 - PAS domain S-box, at 1,236,036 to 1,238,051 _1139 Psest_1140: Psest_1140 - 2-dehydropantoate 2-reductase, at 1,238,097 to 1,239,008 _1140 Psest_1141: Psest_1141 - diguanylate cyclase (GGDEF) domain, at 1,239,013 to 1,239,978 _1141 Psest_1142: Psest_1142 - Uncharacterized protein conserved in bacteria, at 1,240,134 to 1,240,613 _1142 Psest_1143: Psest_1143 - Small-conductance mechanosensitive channel, at 1,240,704 to 1,241,528 _1143 Position (kb) 1239 1240Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1238.066 kb on + strandat 1238.066 kb on + strandat 1238.254 kb on + strand, within Psest_1140at 1238.254 kb on + strand, within Psest_1140at 1238.254 kb on + strand, within Psest_1140at 1238.254 kb on + strand, within Psest_1140at 1238.254 kb on + strand, within Psest_1140at 1238.254 kb on + strand, within Psest_1140at 1238.254 kb on + strand, within Psest_1140at 1238.255 kb on - strand, within Psest_1140at 1238.266 kb on + strand, within Psest_1140at 1238.266 kb on + strand, within Psest_1140at 1238.267 kb on - strand, within Psest_1140at 1238.267 kb on - strand, within Psest_1140at 1238.422 kb on + strand, within Psest_1140at 1238.423 kb on - strand, within Psest_1140at 1238.423 kb on - strand, within Psest_1140at 1238.503 kb on + strand, within Psest_1140at 1238.773 kb on + strand, within Psest_1140at 1238.773 kb on + strand, within Psest_1140at 1238.773 kb on + strand, within Psest_1140at 1238.774 kb on - strand, within Psest_1140at 1238.774 kb on - strand, within Psest_1140at 1239.059 kb on + strandat 1239.059 kb on + strandat 1239.059 kb on + strandat 1239.060 kb on - strandat 1239.359 kb on + strand, within Psest_1141at 1239.360 kb on - strand, within Psest_1141at 1239.360 kb on - strand, within Psest_1141at 1239.360 kb on - strand, within Psest_1141at 1239.362 kb on - strand, within Psest_1141at 1239.362 kb on - strand, within Psest_1141at 1239.362 kb on - strand, within Psest_1141at 1239.419 kb on + strand, within Psest_1141at 1239.419 kb on + strand, within Psest_1141at 1239.419 kb on + strand, within Psest_1141at 1239.420 kb on - strand, within Psest_1141at 1239.422 kb on + strand, within Psest_1141at 1239.422 kb on + strand, within Psest_1141at 1239.422 kb on + strand, within Psest_1141at 1239.422 kb on + strand, within Psest_1141at 1239.422 kb on + strand, within Psest_1141at 1239.422 kb on + strand, within Psest_1141at 1239.422 kb on + strand, within Psest_1141at 1239.423 kb on - strand, within Psest_1141at 1239.423 kb on - strand, within Psest_1141at 1239.423 kb on - strand, within Psest_1141at 1239.423 kb on - strand, within Psest_1141at 1239.423 kb on - strand, within Psest_1141at 1239.423 kb on - strand, within Psest_1141at 1239.423 kb on - strand, within Psest_1141at 1239.423 kb on - strand, within Psest_1141at 1239.688 kb on + strand, within Psest_1141at 1239.728 kb on + strand, within Psest_1141at 1239.728 kb on + strand, within Psest_1141at 1239.728 kb on + strand, within Psest_1141at 1239.728 kb on + strand, within Psest_1141at 1239.729 kb on - strand, within Psest_1141at 1239.729 kb on - strand, within Psest_1141at 1239.729 kb on - strand, within Psest_1141at 1239.729 kb on - strand, within Psest_1141at 1239.729 kb on - strand, within Psest_1141at 1239.729 kb on - strand, within Psest_1141at 1239.729 kb on - strand, within Psest_1141at 1239.735 kb on - strand, within Psest_1141at 1240.052 kb on + strandat 1240.052 kb on + strandat 1240.054 kb on + strandat 1240.054 kb on + strandat 1240.054 kb on + strandat 1240.055 kb on - strandat 1240.055 kb on - strandat 1240.055 kb on - strandat 1240.055 kb on - strandat 1240.115 kb on + strandat 1240.115 kb on + strandat 1240.115 kb on + strandat 1240.119 kb on + strandat 1240.119 kb on + strandat 1240.119 kb on + strandat 1240.120 kb on - strandat 1240.120 kb on - strandat 1240.458 kb on + strand, within Psest_1142at 1240.458 kb on + strand, within Psest_1142at 1240.458 kb on + strand, within Psest_1142at 1240.458 kb on + strand, within Psest_1142at 1240.458 kb on + strand, within Psest_1142at 1240.483 kb on + strand, within Psest_1142at 1240.484 kb on - strand, within Psest_1142at 1240.642 kb on + strandat 1240.643 kb on - strandat 1240.643 kb on - strandat 1240.697 kb on + strandat 1240.697 kb on + strandat 1240.697 kb on + strandat 1240.698 kb on - strandat 1240.722 kb on + strandat 1240.961 kb on - strand, within Psest_1143

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.09 mg/ml
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1,238,066 + -0.6
1,238,066 + +0.7
1,238,254 + Psest_1140 0.17 +0.8
1,238,254 + Psest_1140 0.17 -0.6
1,238,254 + Psest_1140 0.17 +1.3
1,238,254 + Psest_1140 0.17 +0.9
1,238,254 + Psest_1140 0.17 -1.0
1,238,254 + Psest_1140 0.17 +0.1
1,238,254 + Psest_1140 0.17 +2.2
1,238,255 - Psest_1140 0.17 +0.1
1,238,266 + Psest_1140 0.19 -0.4
1,238,266 + Psest_1140 0.19 +0.0
1,238,267 - Psest_1140 0.19 +0.4
1,238,267 - Psest_1140 0.19 +0.5
1,238,422 + Psest_1140 0.36 +0.4
1,238,423 - Psest_1140 0.36 -1.2
1,238,423 - Psest_1140 0.36 +1.6
1,238,503 + Psest_1140 0.45 +0.2
1,238,773 + Psest_1140 0.74 -1.4
1,238,773 + Psest_1140 0.74 -0.0
1,238,773 + Psest_1140 0.74 +0.4
1,238,774 - Psest_1140 0.74 +0.9
1,238,774 - Psest_1140 0.74 -1.6
1,239,059 + +1.6
1,239,059 + -1.0
1,239,059 + +0.1
1,239,060 - -0.2
1,239,359 + Psest_1141 0.36 +0.4
1,239,360 - Psest_1141 0.36 +0.9
1,239,360 - Psest_1141 0.36 -0.3
1,239,360 - Psest_1141 0.36 +2.1
1,239,362 - Psest_1141 0.36 -1.2
1,239,362 - Psest_1141 0.36 +0.5
1,239,362 - Psest_1141 0.36 +0.3
1,239,419 + Psest_1141 0.42 -1.8
1,239,419 + Psest_1141 0.42 +0.4
1,239,419 + Psest_1141 0.42 +0.9
1,239,420 - Psest_1141 0.42 +2.4
1,239,422 + Psest_1141 0.42 -1.9
1,239,422 + Psest_1141 0.42 +1.3
1,239,422 + Psest_1141 0.42 +0.8
1,239,422 + Psest_1141 0.42 +0.4
1,239,422 + Psest_1141 0.42 +0.6
1,239,422 + Psest_1141 0.42 +1.3
1,239,422 + Psest_1141 0.42 +0.6
1,239,423 - Psest_1141 0.42 +3.2
1,239,423 - Psest_1141 0.42 -0.3
1,239,423 - Psest_1141 0.42 +1.6
1,239,423 - Psest_1141 0.42 -0.1
1,239,423 - Psest_1141 0.42 -2.8
1,239,423 - Psest_1141 0.42 +0.4
1,239,423 - Psest_1141 0.42 -0.6
1,239,423 - Psest_1141 0.42 -1.5
1,239,688 + Psest_1141 0.70 +0.4
1,239,728 + Psest_1141 0.74 +1.6
1,239,728 + Psest_1141 0.74 -1.5
1,239,728 + Psest_1141 0.74 +1.2
1,239,728 + Psest_1141 0.74 +2.3
1,239,729 - Psest_1141 0.74 -0.1
1,239,729 - Psest_1141 0.74 +0.3
1,239,729 - Psest_1141 0.74 +0.5
1,239,729 - Psest_1141 0.74 -0.1
1,239,729 - Psest_1141 0.74 +0.7
1,239,729 - Psest_1141 0.74 +0.6
1,239,729 - Psest_1141 0.74 +2.0
1,239,735 - Psest_1141 0.75 -0.0
1,240,052 + -0.0
1,240,052 + +0.1
1,240,054 + -0.0
1,240,054 + +1.3
1,240,054 + -0.6
1,240,055 - +1.3
1,240,055 - +0.1
1,240,055 - +1.1
1,240,055 - -0.5
1,240,115 + -0.7
1,240,115 + -0.1
1,240,115 + +0.4
1,240,119 + +1.5
1,240,119 + -0.5
1,240,119 + -1.0
1,240,120 - -0.7
1,240,120 - +0.8
1,240,458 + Psest_1142 0.68 +0.4
1,240,458 + Psest_1142 0.68 -0.5
1,240,458 + Psest_1142 0.68 -0.4
1,240,458 + Psest_1142 0.68 -0.6
1,240,458 + Psest_1142 0.68 +0.3
1,240,483 + Psest_1142 0.73 -1.0
1,240,484 - Psest_1142 0.73 -1.8
1,240,642 + +1.4
1,240,643 - +1.3
1,240,643 - -0.6
1,240,697 + +0.4
1,240,697 + +0.3
1,240,697 + -1.5
1,240,698 - +0.4
1,240,722 + -0.4
1,240,961 - Psest_1143 0.31 -0.9

Or see this region's nucleotide sequence