Experiment: Thallium(I) acetate 0.09 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1139 and Psest_1140 are separated by 45 nucleotides Psest_1140 and Psest_1141 are separated by 4 nucleotides Psest_1141 and Psest_1142 are separated by 155 nucleotides Psest_1142 and Psest_1143 are separated by 90 nucleotides
Psest_1139: Psest_1139 - PAS domain S-box, at 1,236,036 to 1,238,051
_1139
Psest_1140: Psest_1140 - 2-dehydropantoate 2-reductase, at 1,238,097 to 1,239,008
_1140
Psest_1141: Psest_1141 - diguanylate cyclase (GGDEF) domain, at 1,239,013 to 1,239,978
_1141
Psest_1142: Psest_1142 - Uncharacterized protein conserved in bacteria, at 1,240,134 to 1,240,613
_1142
Psest_1143: Psest_1143 - Small-conductance mechanosensitive channel, at 1,240,704 to 1,241,528
_1143
Position (kb)
1239
1240 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1238.066 kb on + strand at 1238.066 kb on + strand at 1238.254 kb on + strand, within Psest_1140 at 1238.254 kb on + strand, within Psest_1140 at 1238.254 kb on + strand, within Psest_1140 at 1238.254 kb on + strand, within Psest_1140 at 1238.254 kb on + strand, within Psest_1140 at 1238.254 kb on + strand, within Psest_1140 at 1238.254 kb on + strand, within Psest_1140 at 1238.255 kb on - strand, within Psest_1140 at 1238.266 kb on + strand, within Psest_1140 at 1238.266 kb on + strand, within Psest_1140 at 1238.267 kb on - strand, within Psest_1140 at 1238.267 kb on - strand, within Psest_1140 at 1238.422 kb on + strand, within Psest_1140 at 1238.423 kb on - strand, within Psest_1140 at 1238.423 kb on - strand, within Psest_1140 at 1238.503 kb on + strand, within Psest_1140 at 1238.773 kb on + strand, within Psest_1140 at 1238.773 kb on + strand, within Psest_1140 at 1238.773 kb on + strand, within Psest_1140 at 1238.774 kb on - strand, within Psest_1140 at 1238.774 kb on - strand, within Psest_1140 at 1239.059 kb on + strand at 1239.059 kb on + strand at 1239.059 kb on + strand at 1239.060 kb on - strand at 1239.359 kb on + strand, within Psest_1141 at 1239.360 kb on - strand, within Psest_1141 at 1239.360 kb on - strand, within Psest_1141 at 1239.360 kb on - strand, within Psest_1141 at 1239.362 kb on - strand, within Psest_1141 at 1239.362 kb on - strand, within Psest_1141 at 1239.362 kb on - strand, within Psest_1141 at 1239.419 kb on + strand, within Psest_1141 at 1239.419 kb on + strand, within Psest_1141 at 1239.419 kb on + strand, within Psest_1141 at 1239.420 kb on - strand, within Psest_1141 at 1239.422 kb on + strand, within Psest_1141 at 1239.422 kb on + strand, within Psest_1141 at 1239.422 kb on + strand, within Psest_1141 at 1239.422 kb on + strand, within Psest_1141 at 1239.422 kb on + strand, within Psest_1141 at 1239.422 kb on + strand, within Psest_1141 at 1239.422 kb on + strand, within Psest_1141 at 1239.423 kb on - strand, within Psest_1141 at 1239.423 kb on - strand, within Psest_1141 at 1239.423 kb on - strand, within Psest_1141 at 1239.423 kb on - strand, within Psest_1141 at 1239.423 kb on - strand, within Psest_1141 at 1239.423 kb on - strand, within Psest_1141 at 1239.423 kb on - strand, within Psest_1141 at 1239.423 kb on - strand, within Psest_1141 at 1239.688 kb on + strand, within Psest_1141 at 1239.728 kb on + strand, within Psest_1141 at 1239.728 kb on + strand, within Psest_1141 at 1239.728 kb on + strand, within Psest_1141 at 1239.728 kb on + strand, within Psest_1141 at 1239.729 kb on - strand, within Psest_1141 at 1239.729 kb on - strand, within Psest_1141 at 1239.729 kb on - strand, within Psest_1141 at 1239.729 kb on - strand, within Psest_1141 at 1239.729 kb on - strand, within Psest_1141 at 1239.729 kb on - strand, within Psest_1141 at 1239.729 kb on - strand, within Psest_1141 at 1239.735 kb on - strand, within Psest_1141 at 1240.052 kb on + strand at 1240.052 kb on + strand at 1240.054 kb on + strand at 1240.054 kb on + strand at 1240.054 kb on + strand at 1240.055 kb on - strand at 1240.055 kb on - strand at 1240.055 kb on - strand at 1240.055 kb on - strand at 1240.115 kb on + strand at 1240.115 kb on + strand at 1240.115 kb on + strand at 1240.119 kb on + strand at 1240.119 kb on + strand at 1240.119 kb on + strand at 1240.120 kb on - strand at 1240.120 kb on - strand at 1240.458 kb on + strand, within Psest_1142 at 1240.458 kb on + strand, within Psest_1142 at 1240.458 kb on + strand, within Psest_1142 at 1240.458 kb on + strand, within Psest_1142 at 1240.458 kb on + strand, within Psest_1142 at 1240.483 kb on + strand, within Psest_1142 at 1240.484 kb on - strand, within Psest_1142 at 1240.642 kb on + strand at 1240.643 kb on - strand at 1240.643 kb on - strand at 1240.697 kb on + strand at 1240.697 kb on + strand at 1240.697 kb on + strand at 1240.698 kb on - strand at 1240.722 kb on + strand at 1240.961 kb on - strand, within Psest_1143
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.09 mg/ml remove 1,238,066 + -0.6 1,238,066 + +0.7 1,238,254 + Psest_1140 0.17 +0.8 1,238,254 + Psest_1140 0.17 -0.6 1,238,254 + Psest_1140 0.17 +1.3 1,238,254 + Psest_1140 0.17 +0.9 1,238,254 + Psest_1140 0.17 -1.0 1,238,254 + Psest_1140 0.17 +0.1 1,238,254 + Psest_1140 0.17 +2.2 1,238,255 - Psest_1140 0.17 +0.1 1,238,266 + Psest_1140 0.19 -0.4 1,238,266 + Psest_1140 0.19 +0.0 1,238,267 - Psest_1140 0.19 +0.4 1,238,267 - Psest_1140 0.19 +0.5 1,238,422 + Psest_1140 0.36 +0.4 1,238,423 - Psest_1140 0.36 -1.2 1,238,423 - Psest_1140 0.36 +1.6 1,238,503 + Psest_1140 0.45 +0.2 1,238,773 + Psest_1140 0.74 -1.4 1,238,773 + Psest_1140 0.74 -0.0 1,238,773 + Psest_1140 0.74 +0.4 1,238,774 - Psest_1140 0.74 +0.9 1,238,774 - Psest_1140 0.74 -1.6 1,239,059 + +1.6 1,239,059 + -1.0 1,239,059 + +0.1 1,239,060 - -0.2 1,239,359 + Psest_1141 0.36 +0.4 1,239,360 - Psest_1141 0.36 +0.9 1,239,360 - Psest_1141 0.36 -0.3 1,239,360 - Psest_1141 0.36 +2.1 1,239,362 - Psest_1141 0.36 -1.2 1,239,362 - Psest_1141 0.36 +0.5 1,239,362 - Psest_1141 0.36 +0.3 1,239,419 + Psest_1141 0.42 -1.8 1,239,419 + Psest_1141 0.42 +0.4 1,239,419 + Psest_1141 0.42 +0.9 1,239,420 - Psest_1141 0.42 +2.4 1,239,422 + Psest_1141 0.42 -1.9 1,239,422 + Psest_1141 0.42 +1.3 1,239,422 + Psest_1141 0.42 +0.8 1,239,422 + Psest_1141 0.42 +0.4 1,239,422 + Psest_1141 0.42 +0.6 1,239,422 + Psest_1141 0.42 +1.3 1,239,422 + Psest_1141 0.42 +0.6 1,239,423 - Psest_1141 0.42 +3.2 1,239,423 - Psest_1141 0.42 -0.3 1,239,423 - Psest_1141 0.42 +1.6 1,239,423 - Psest_1141 0.42 -0.1 1,239,423 - Psest_1141 0.42 -2.8 1,239,423 - Psest_1141 0.42 +0.4 1,239,423 - Psest_1141 0.42 -0.6 1,239,423 - Psest_1141 0.42 -1.5 1,239,688 + Psest_1141 0.70 +0.4 1,239,728 + Psest_1141 0.74 +1.6 1,239,728 + Psest_1141 0.74 -1.5 1,239,728 + Psest_1141 0.74 +1.2 1,239,728 + Psest_1141 0.74 +2.3 1,239,729 - Psest_1141 0.74 -0.1 1,239,729 - Psest_1141 0.74 +0.3 1,239,729 - Psest_1141 0.74 +0.5 1,239,729 - Psest_1141 0.74 -0.1 1,239,729 - Psest_1141 0.74 +0.7 1,239,729 - Psest_1141 0.74 +0.6 1,239,729 - Psest_1141 0.74 +2.0 1,239,735 - Psest_1141 0.75 -0.0 1,240,052 + -0.0 1,240,052 + +0.1 1,240,054 + -0.0 1,240,054 + +1.3 1,240,054 + -0.6 1,240,055 - +1.3 1,240,055 - +0.1 1,240,055 - +1.1 1,240,055 - -0.5 1,240,115 + -0.7 1,240,115 + -0.1 1,240,115 + +0.4 1,240,119 + +1.5 1,240,119 + -0.5 1,240,119 + -1.0 1,240,120 - -0.7 1,240,120 - +0.8 1,240,458 + Psest_1142 0.68 +0.4 1,240,458 + Psest_1142 0.68 -0.5 1,240,458 + Psest_1142 0.68 -0.4 1,240,458 + Psest_1142 0.68 -0.6 1,240,458 + Psest_1142 0.68 +0.3 1,240,483 + Psest_1142 0.73 -1.0 1,240,484 - Psest_1142 0.73 -1.8 1,240,642 + +1.4 1,240,643 - +1.3 1,240,643 - -0.6 1,240,697 + +0.4 1,240,697 + +0.3 1,240,697 + -1.5 1,240,698 - +0.4 1,240,722 + -0.4 1,240,961 - Psest_1143 0.31 -0.9
Or see this region's nucleotide sequence