Experiment: Thallium(I) acetate 0.08 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0918 and Psest_0919 are separated by 112 nucleotides Psest_0919 and Psest_0920 are separated by 137 nucleotides Psest_0920 and Psest_0921 are separated by 76 nucleotides
Psest_0918: Psest_0918 - Predicted permease, DMT superfamily, at 998,650 to 999,558
_0918
Psest_0919: Psest_0919 - Permeases of the drug/metabolite transporter (DMT) superfamily, at 999,671 to 1,000,627
_0919
Psest_0920: Psest_0920 - Transcriptional regulators, at 1,000,765 to 1,001,250
_0920
Psest_0921: Psest_0921 - AraC-type DNA-binding domain-containing proteins, at 1,001,327 to 1,002,154
_0921
Position (kb) 999
1000
1001 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 998.672 kb on + strand at 998.672 kb on + strand at 998.672 kb on + strand at 998.672 kb on + strand at 998.672 kb on + strand at 998.672 kb on + strand at 998.672 kb on + strand at 998.672 kb on + strand at 998.672 kb on + strand at 998.672 kb on + strand at 998.672 kb on + strand at 998.673 kb on - strand at 998.756 kb on + strand, within Psest_0918 at 998.756 kb on + strand, within Psest_0918 at 998.756 kb on + strand, within Psest_0918 at 998.756 kb on + strand, within Psest_0918 at 998.767 kb on + strand, within Psest_0918 at 998.861 kb on + strand, within Psest_0918 at 998.861 kb on + strand, within Psest_0918 at 998.862 kb on - strand, within Psest_0918 at 998.862 kb on - strand, within Psest_0918 at 998.862 kb on - strand, within Psest_0918 at 998.867 kb on + strand, within Psest_0918 at 998.954 kb on + strand, within Psest_0918 at 998.954 kb on + strand, within Psest_0918 at 998.954 kb on + strand, within Psest_0918 at 998.954 kb on + strand, within Psest_0918 at 998.954 kb on + strand, within Psest_0918 at 998.954 kb on + strand, within Psest_0918 at 998.954 kb on + strand, within Psest_0918 at 998.954 kb on + strand, within Psest_0918 at 998.954 kb on + strand, within Psest_0918 at 998.954 kb on + strand, within Psest_0918 at 998.954 kb on + strand, within Psest_0918 at 998.954 kb on + strand, within Psest_0918 at 998.954 kb on + strand, within Psest_0918 at 998.955 kb on - strand, within Psest_0918 at 998.955 kb on - strand, within Psest_0918 at 998.955 kb on - strand, within Psest_0918 at 998.955 kb on - strand, within Psest_0918 at 998.955 kb on - strand, within Psest_0918 at 998.955 kb on - strand, within Psest_0918 at 998.955 kb on - strand, within Psest_0918 at 998.955 kb on - strand, within Psest_0918 at 998.955 kb on - strand, within Psest_0918 at 998.955 kb on - strand, within Psest_0918 at 998.955 kb on - strand, within Psest_0918 at 998.955 kb on - strand, within Psest_0918 at 998.955 kb on - strand, within Psest_0918 at 999.047 kb on - strand, within Psest_0918 at 999.127 kb on + strand, within Psest_0918 at 999.127 kb on + strand, within Psest_0918 at 999.127 kb on + strand, within Psest_0918 at 999.127 kb on + strand, within Psest_0918 at 999.127 kb on + strand, within Psest_0918 at 999.127 kb on + strand, within Psest_0918 at 999.127 kb on + strand, within Psest_0918 at 999.127 kb on + strand, within Psest_0918 at 999.127 kb on + strand, within Psest_0918 at 999.127 kb on + strand, within Psest_0918 at 999.127 kb on + strand, within Psest_0918 at 999.127 kb on + strand, within Psest_0918 at 999.128 kb on - strand, within Psest_0918 at 999.128 kb on - strand, within Psest_0918 at 999.128 kb on - strand, within Psest_0918 at 999.156 kb on + strand, within Psest_0918 at 999.156 kb on + strand, within Psest_0918 at 999.156 kb on + strand, within Psest_0918 at 999.157 kb on - strand, within Psest_0918 at 999.160 kb on + strand, within Psest_0918 at 999.160 kb on + strand, within Psest_0918 at 999.160 kb on + strand, within Psest_0918 at 999.160 kb on + strand, within Psest_0918 at 999.161 kb on - strand, within Psest_0918 at 999.196 kb on - strand, within Psest_0918 at 999.237 kb on + strand, within Psest_0918 at 999.316 kb on + strand, within Psest_0918 at 999.317 kb on - strand, within Psest_0918 at 999.362 kb on + strand, within Psest_0918 at 999.373 kb on + strand, within Psest_0918 at 999.374 kb on - strand, within Psest_0918 at 999.374 kb on - strand, within Psest_0918 at 999.497 kb on + strand at 999.498 kb on - strand at 999.498 kb on - strand at 999.498 kb on - strand at 999.561 kb on - strand at 999.652 kb on + strand at 999.652 kb on + strand at 999.652 kb on + strand at 999.652 kb on + strand at 999.653 kb on - strand at 999.653 kb on - strand at 999.653 kb on - strand at 999.653 kb on - strand at 999.654 kb on + strand at 999.654 kb on + strand at 999.654 kb on + strand at 999.654 kb on + strand at 999.679 kb on + strand at 999.679 kb on + strand at 999.679 kb on + strand at 999.679 kb on + strand at 999.679 kb on + strand at 999.680 kb on - strand at 999.680 kb on - strand at 999.734 kb on + strand at 999.734 kb on + strand at 999.735 kb on - strand at 999.735 kb on - strand at 999.735 kb on - strand at 999.735 kb on - strand at 999.735 kb on - strand at 1000.123 kb on + strand, within Psest_0919 at 1000.124 kb on - strand, within Psest_0919 at 1000.124 kb on - strand, within Psest_0919 at 1000.260 kb on + strand, within Psest_0919 at 1000.570 kb on + strand at 1000.571 kb on - strand at 1000.607 kb on + strand at 1000.608 kb on - strand at 1000.608 kb on - strand at 1000.608 kb on - strand at 1000.643 kb on + strand at 1000.644 kb on - strand at 1000.644 kb on - strand at 1000.647 kb on + strand at 1000.648 kb on - strand at 1000.648 kb on - strand at 1000.648 kb on - strand at 1000.648 kb on - strand at 1000.967 kb on + strand, within Psest_0920 at 1000.967 kb on + strand, within Psest_0920 at 1000.967 kb on + strand, within Psest_0920 at 1000.967 kb on + strand, within Psest_0920 at 1000.967 kb on + strand, within Psest_0920 at 1000.967 kb on + strand, within Psest_0920 at 1000.967 kb on + strand, within Psest_0920 at 1000.967 kb on + strand, within Psest_0920 at 1000.968 kb on - strand, within Psest_0920 at 1000.968 kb on - strand, within Psest_0920 at 1000.968 kb on - strand, within Psest_0920 at 1000.968 kb on - strand, within Psest_0920 at 1000.968 kb on - strand, within Psest_0920 at 1000.968 kb on - strand, within Psest_0920 at 1000.968 kb on - strand, within Psest_0920 at 1000.997 kb on + strand, within Psest_0920 at 1001.059 kb on + strand, within Psest_0920 at 1001.059 kb on + strand, within Psest_0920 at 1001.059 kb on + strand, within Psest_0920 at 1001.059 kb on + strand, within Psest_0920 at 1001.059 kb on + strand, within Psest_0920 at 1001.060 kb on - strand, within Psest_0920 at 1001.060 kb on - strand, within Psest_0920 at 1001.083 kb on + strand, within Psest_0920 at 1001.084 kb on - strand, within Psest_0920 at 1001.084 kb on - strand, within Psest_0920 at 1001.204 kb on - strand at 1001.286 kb on + strand at 1001.286 kb on + strand at 1001.286 kb on + strand at 1001.286 kb on + strand at 1001.286 kb on + strand at 1001.286 kb on + strand at 1001.287 kb on - strand at 1001.287 kb on - strand at 1001.289 kb on + strand at 1001.290 kb on - strand at 1001.290 kb on - strand at 1001.290 kb on - strand at 1001.313 kb on + strand at 1001.313 kb on + strand at 1001.313 kb on + strand at 1001.314 kb on - strand at 1001.314 kb on - strand at 1001.495 kb on + strand, within Psest_0921 at 1001.495 kb on + strand, within Psest_0921 at 1001.495 kb on + strand, within Psest_0921 at 1001.495 kb on + strand, within Psest_0921 at 1001.495 kb on + strand, within Psest_0921 at 1001.496 kb on - strand, within Psest_0921 at 1001.496 kb on - strand, within Psest_0921 at 1001.496 kb on - strand, within Psest_0921 at 1001.496 kb on - strand, within Psest_0921 at 1001.496 kb on - strand, within Psest_0921 at 1001.496 kb on - strand, within Psest_0921 at 1001.496 kb on - strand, within Psest_0921 at 1001.499 kb on + strand, within Psest_0921 at 1001.500 kb on - strand, within Psest_0921 at 1001.500 kb on - strand, within Psest_0921
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.08 mg/ml remove 998,672 + -0.1 998,672 + +1.1 998,672 + +1.0 998,672 + +1.1 998,672 + -1.0 998,672 + -0.6 998,672 + +0.3 998,672 + -1.0 998,672 + -0.1 998,672 + -2.5 998,672 + +0.2 998,673 - +0.1 998,756 + Psest_0918 0.12 +0.7 998,756 + Psest_0918 0.12 -2.0 998,756 + Psest_0918 0.12 +0.0 998,756 + Psest_0918 0.12 -0.8 998,767 + Psest_0918 0.13 +0.2 998,861 + Psest_0918 0.23 -1.0 998,861 + Psest_0918 0.23 +2.6 998,862 - Psest_0918 0.23 +1.6 998,862 - Psest_0918 0.23 -1.2 998,862 - Psest_0918 0.23 +3.3 998,867 + Psest_0918 0.24 +1.0 998,954 + Psest_0918 0.33 -1.5 998,954 + Psest_0918 0.33 +0.2 998,954 + Psest_0918 0.33 -1.6 998,954 + Psest_0918 0.33 +0.7 998,954 + Psest_0918 0.33 -0.9 998,954 + Psest_0918 0.33 -0.8 998,954 + Psest_0918 0.33 -0.7 998,954 + Psest_0918 0.33 -0.7 998,954 + Psest_0918 0.33 -1.2 998,954 + Psest_0918 0.33 +0.1 998,954 + Psest_0918 0.33 -0.4 998,954 + Psest_0918 0.33 +0.4 998,954 + Psest_0918 0.33 -0.9 998,955 - Psest_0918 0.34 -0.2 998,955 - Psest_0918 0.34 -0.4 998,955 - Psest_0918 0.34 +0.2 998,955 - Psest_0918 0.34 +1.0 998,955 - Psest_0918 0.34 +3.0 998,955 - Psest_0918 0.34 +0.3 998,955 - Psest_0918 0.34 -2.1 998,955 - Psest_0918 0.34 -2.5 998,955 - Psest_0918 0.34 -0.9 998,955 - Psest_0918 0.34 -1.0 998,955 - Psest_0918 0.34 -0.3 998,955 - Psest_0918 0.34 +1.0 998,955 - Psest_0918 0.34 +0.1 999,047 - Psest_0918 0.44 +1.6 999,127 + Psest_0918 0.52 -1.4 999,127 + Psest_0918 0.52 -1.0 999,127 + Psest_0918 0.52 +0.1 999,127 + Psest_0918 0.52 -2.7 999,127 + Psest_0918 0.52 -0.2 999,127 + Psest_0918 0.52 -0.2 999,127 + Psest_0918 0.52 +1.9 999,127 + Psest_0918 0.52 +0.2 999,127 + Psest_0918 0.52 +2.0 999,127 + Psest_0918 0.52 +0.1 999,127 + Psest_0918 0.52 -1.1 999,127 + Psest_0918 0.52 +0.1 999,128 - Psest_0918 0.53 +0.1 999,128 - Psest_0918 0.53 +0.1 999,128 - Psest_0918 0.53 -1.1 999,156 + Psest_0918 0.56 -0.5 999,156 + Psest_0918 0.56 -1.1 999,156 + Psest_0918 0.56 +0.6 999,157 - Psest_0918 0.56 -1.4 999,160 + Psest_0918 0.56 +0.9 999,160 + Psest_0918 0.56 -1.6 999,160 + Psest_0918 0.56 -1.1 999,160 + Psest_0918 0.56 +0.8 999,161 - Psest_0918 0.56 -0.3 999,196 - Psest_0918 0.60 -1.1 999,237 + Psest_0918 0.65 +0.1 999,316 + Psest_0918 0.73 -0.2 999,317 - Psest_0918 0.73 -0.9 999,362 + Psest_0918 0.78 -1.0 999,373 + Psest_0918 0.80 +1.2 999,374 - Psest_0918 0.80 +0.1 999,374 - Psest_0918 0.80 -0.2 999,497 + +0.8 999,498 - +0.5 999,498 - +0.7 999,498 - +1.0 999,561 - -0.4 999,652 + -0.4 999,652 + -1.4 999,652 + -0.5 999,652 + -0.5 999,653 - +0.3 999,653 - -1.5 999,653 - +0.2 999,653 - +1.9 999,654 + +1.5 999,654 + +0.6 999,654 + -0.8 999,654 + -0.4 999,679 + -1.9 999,679 + -0.4 999,679 + +0.4 999,679 + -1.5 999,679 + +1.0 999,680 - +0.2 999,680 - +0.8 999,734 + +2.0 999,734 + -0.8 999,735 - -0.6 999,735 - -0.5 999,735 - -0.4 999,735 - -0.4 999,735 - +0.5 1,000,123 + Psest_0919 0.47 -1.9 1,000,124 - Psest_0919 0.47 -0.6 1,000,124 - Psest_0919 0.47 -0.3 1,000,260 + Psest_0919 0.62 +0.1 1,000,570 + -0.6 1,000,571 - +0.9 1,000,607 + +0.3 1,000,608 - -2.4 1,000,608 - -1.4 1,000,608 - +0.1 1,000,643 + +0.7 1,000,644 - -0.0 1,000,644 - -1.3 1,000,647 + -1.6 1,000,648 - -0.5 1,000,648 - +0.4 1,000,648 - +0.6 1,000,648 - +0.2 1,000,967 + Psest_0920 0.42 -1.0 1,000,967 + Psest_0920 0.42 -1.2 1,000,967 + Psest_0920 0.42 +1.1 1,000,967 + Psest_0920 0.42 -0.5 1,000,967 + Psest_0920 0.42 +1.5 1,000,967 + Psest_0920 0.42 -1.5 1,000,967 + Psest_0920 0.42 -1.2 1,000,967 + Psest_0920 0.42 +0.6 1,000,968 - Psest_0920 0.42 +0.1 1,000,968 - Psest_0920 0.42 +0.1 1,000,968 - Psest_0920 0.42 -1.2 1,000,968 - Psest_0920 0.42 +1.2 1,000,968 - Psest_0920 0.42 +1.1 1,000,968 - Psest_0920 0.42 +0.3 1,000,968 - Psest_0920 0.42 +0.2 1,000,997 + Psest_0920 0.48 -2.0 1,001,059 + Psest_0920 0.60 -0.4 1,001,059 + Psest_0920 0.60 -1.0 1,001,059 + Psest_0920 0.60 -1.0 1,001,059 + Psest_0920 0.60 -1.0 1,001,059 + Psest_0920 0.60 +0.6 1,001,060 - Psest_0920 0.61 -0.5 1,001,060 - Psest_0920 0.61 +0.9 1,001,083 + Psest_0920 0.65 -1.2 1,001,084 - Psest_0920 0.66 -1.4 1,001,084 - Psest_0920 0.66 -1.2 1,001,204 - -0.3 1,001,286 + +0.3 1,001,286 + -1.7 1,001,286 + -0.7 1,001,286 + -2.4 1,001,286 + -2.6 1,001,286 + -0.6 1,001,287 - +1.2 1,001,287 - -0.4 1,001,289 + -0.1 1,001,290 - -0.3 1,001,290 - +0.5 1,001,290 - +0.8 1,001,313 + -0.3 1,001,313 + -1.7 1,001,313 + -0.1 1,001,314 - +0.3 1,001,314 - -1.4 1,001,495 + Psest_0921 0.20 -0.8 1,001,495 + Psest_0921 0.20 +0.7 1,001,495 + Psest_0921 0.20 -0.9 1,001,495 + Psest_0921 0.20 -0.7 1,001,495 + Psest_0921 0.20 +0.7 1,001,496 - Psest_0921 0.20 -0.0 1,001,496 - Psest_0921 0.20 -2.6 1,001,496 - Psest_0921 0.20 +1.2 1,001,496 - Psest_0921 0.20 -3.2 1,001,496 - Psest_0921 0.20 +0.5 1,001,496 - Psest_0921 0.20 +2.7 1,001,496 - Psest_0921 0.20 +0.3 1,001,499 + Psest_0921 0.21 +0.6 1,001,500 - Psest_0921 0.21 -0.3 1,001,500 - Psest_0921 0.21 -1.4
Or see this region's nucleotide sequence