Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3503

Experiment: Thallium(I) acetate 0.08 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_3502 and Psest_3503 are separated by 105 nucleotidesPsest_3503 and Psest_3504 are separated by 98 nucleotides Psest_3502: Psest_3502 - flavoprotein, HI0933 family/uncharacterized flavoprotein, PP_4765 family, at 3,673,816 to 3,675,048 _3502 Psest_3503: Psest_3503 - hypothetical protein, at 3,675,154 to 3,677,052 _3503 Psest_3504: Psest_3504 - Predicted acyltransferases, at 3,677,151 to 3,678,218 _3504 Position (kb) 3675 3676 3677 3678Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3674.260 kb on - strand, within Psest_3502at 3674.563 kb on + strand, within Psest_3502at 3674.563 kb on + strand, within Psest_3502at 3674.564 kb on - strandat 3674.651 kb on + strand, within Psest_3502at 3674.652 kb on - strand, within Psest_3502at 3675.046 kb on + strandat 3675.047 kb on - strandat 3675.076 kb on + strandat 3675.077 kb on - strandat 3675.265 kb on + strandat 3675.406 kb on + strand, within Psest_3503at 3675.407 kb on - strand, within Psest_3503at 3675.457 kb on + strand, within Psest_3503at 3675.458 kb on - strand, within Psest_3503at 3675.571 kb on + strand, within Psest_3503at 3675.572 kb on - strand, within Psest_3503at 3675.578 kb on - strand, within Psest_3503at 3675.578 kb on - strand, within Psest_3503at 3675.578 kb on - strand, within Psest_3503at 3675.687 kb on + strand, within Psest_3503at 3675.687 kb on + strand, within Psest_3503at 3675.688 kb on - strand, within Psest_3503at 3675.688 kb on - strand, within Psest_3503at 3675.688 kb on - strand, within Psest_3503at 3675.688 kb on - strand, within Psest_3503at 3675.733 kb on + strand, within Psest_3503at 3675.733 kb on + strand, within Psest_3503at 3675.733 kb on + strand, within Psest_3503at 3675.733 kb on + strand, within Psest_3503at 3675.733 kb on + strand, within Psest_3503at 3675.733 kb on + strand, within Psest_3503at 3675.733 kb on + strand, within Psest_3503at 3675.733 kb on + strand, within Psest_3503at 3675.734 kb on - strand, within Psest_3503at 3675.734 kb on - strand, within Psest_3503at 3675.734 kb on - strand, within Psest_3503at 3675.734 kb on - strand, within Psest_3503at 3675.734 kb on - strand, within Psest_3503at 3675.734 kb on - strand, within Psest_3503at 3675.734 kb on - strand, within Psest_3503at 3675.734 kb on - strand, within Psest_3503at 3675.734 kb on - strand, within Psest_3503at 3675.734 kb on - strand, within Psest_3503at 3675.734 kb on - strand, within Psest_3503at 3676.015 kb on + strand, within Psest_3503at 3676.040 kb on - strand, within Psest_3503at 3676.040 kb on - strand, within Psest_3503at 3676.390 kb on + strand, within Psest_3503at 3676.390 kb on + strand, within Psest_3503at 3676.391 kb on - strand, within Psest_3503at 3676.391 kb on - strand, within Psest_3503at 3676.391 kb on - strand, within Psest_3503at 3676.391 kb on - strand, within Psest_3503at 3676.391 kb on - strand, within Psest_3503at 3676.529 kb on + strand, within Psest_3503at 3676.621 kb on + strand, within Psest_3503at 3676.621 kb on + strand, within Psest_3503at 3676.621 kb on + strand, within Psest_3503at 3676.621 kb on + strand, within Psest_3503at 3676.621 kb on + strand, within Psest_3503at 3676.621 kb on + strand, within Psest_3503at 3676.621 kb on + strand, within Psest_3503at 3676.622 kb on - strand, within Psest_3503at 3676.622 kb on - strand, within Psest_3503at 3676.622 kb on - strand, within Psest_3503at 3676.762 kb on + strand, within Psest_3503at 3676.792 kb on + strand, within Psest_3503at 3676.792 kb on + strand, within Psest_3503at 3676.849 kb on + strand, within Psest_3503at 3676.849 kb on + strand, within Psest_3503at 3676.849 kb on + strand, within Psest_3503at 3676.849 kb on + strand, within Psest_3503at 3676.849 kb on + strand, within Psest_3503at 3676.849 kb on + strand, within Psest_3503at 3677.212 kb on + strandat 3677.305 kb on + strand, within Psest_3504at 3677.371 kb on + strand, within Psest_3504at 3677.371 kb on + strand, within Psest_3504at 3677.371 kb on + strand, within Psest_3504at 3677.371 kb on + strand, within Psest_3504at 3677.371 kb on + strand, within Psest_3504at 3677.372 kb on - strand, within Psest_3504at 3677.372 kb on - strand, within Psest_3504at 3677.372 kb on - strand, within Psest_3504at 3677.372 kb on - strand, within Psest_3504at 3677.372 kb on - strand, within Psest_3504at 3677.372 kb on - strand, within Psest_3504at 3677.372 kb on - strand, within Psest_3504at 3677.436 kb on + strand, within Psest_3504at 3677.436 kb on + strand, within Psest_3504at 3677.437 kb on - strand, within Psest_3504at 3677.440 kb on + strand, within Psest_3504at 3677.440 kb on + strand, within Psest_3504at 3677.441 kb on - strand, within Psest_3504at 3677.441 kb on - strand, within Psest_3504at 3677.441 kb on - strand, within Psest_3504at 3677.441 kb on - strand, within Psest_3504at 3677.441 kb on - strand, within Psest_3504at 3677.441 kb on - strand, within Psest_3504at 3677.441 kb on - strand, within Psest_3504at 3677.441 kb on - strand, within Psest_3504at 3677.442 kb on + strand, within Psest_3504at 3677.442 kb on + strand, within Psest_3504at 3677.443 kb on - strand, within Psest_3504at 3677.443 kb on - strand, within Psest_3504at 3677.443 kb on - strand, within Psest_3504at 3677.443 kb on - strand, within Psest_3504at 3677.443 kb on - strand, within Psest_3504at 3677.443 kb on - strand, within Psest_3504at 3677.443 kb on - strand, within Psest_3504at 3677.443 kb on - strand, within Psest_3504at 3677.569 kb on + strand, within Psest_3504at 3677.569 kb on + strand, within Psest_3504at 3677.569 kb on + strand, within Psest_3504at 3677.569 kb on + strand, within Psest_3504at 3677.569 kb on + strand, within Psest_3504at 3677.569 kb on + strand, within Psest_3504at 3677.570 kb on - strand, within Psest_3504at 3677.570 kb on - strand, within Psest_3504at 3677.570 kb on - strand, within Psest_3504at 3677.587 kb on + strand, within Psest_3504at 3677.593 kb on + strand, within Psest_3504at 3677.758 kb on - strand, within Psest_3504at 3677.863 kb on + strand, within Psest_3504at 3677.864 kb on - strand, within Psest_3504at 3677.887 kb on + strand, within Psest_3504at 3677.888 kb on - strand, within Psest_3504at 3677.888 kb on - strand, within Psest_3504at 3677.888 kb on - strand, within Psest_3504at 3677.891 kb on - strand, within Psest_3504at 3677.928 kb on + strand, within Psest_3504

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.08 mg/ml
remove
3,674,260 - Psest_3502 0.36 +2.3
3,674,563 + Psest_3502 0.61 +1.0
3,674,563 + Psest_3502 0.61 -0.6
3,674,564 - -1.7
3,674,651 + Psest_3502 0.68 +0.5
3,674,652 - Psest_3502 0.68 +1.2
3,675,046 + -0.4
3,675,047 - +1.4
3,675,076 + -0.5
3,675,077 - -1.1
3,675,265 + +2.6
3,675,406 + Psest_3503 0.13 -1.6
3,675,407 - Psest_3503 0.13 -0.1
3,675,457 + Psest_3503 0.16 +1.7
3,675,458 - Psest_3503 0.16 -2.3
3,675,571 + Psest_3503 0.22 +0.5
3,675,572 - Psest_3503 0.22 -1.2
3,675,578 - Psest_3503 0.22 -2.5
3,675,578 - Psest_3503 0.22 +0.1
3,675,578 - Psest_3503 0.22 -0.8
3,675,687 + Psest_3503 0.28 -0.4
3,675,687 + Psest_3503 0.28 -0.7
3,675,688 - Psest_3503 0.28 -1.0
3,675,688 - Psest_3503 0.28 +1.3
3,675,688 - Psest_3503 0.28 +0.5
3,675,688 - Psest_3503 0.28 +1.6
3,675,733 + Psest_3503 0.30 +0.1
3,675,733 + Psest_3503 0.30 +0.7
3,675,733 + Psest_3503 0.30 +0.9
3,675,733 + Psest_3503 0.30 +0.8
3,675,733 + Psest_3503 0.30 +0.9
3,675,733 + Psest_3503 0.30 +1.6
3,675,733 + Psest_3503 0.30 -0.0
3,675,733 + Psest_3503 0.30 -1.9
3,675,734 - Psest_3503 0.31 +0.1
3,675,734 - Psest_3503 0.31 +0.3
3,675,734 - Psest_3503 0.31 +0.9
3,675,734 - Psest_3503 0.31 -1.5
3,675,734 - Psest_3503 0.31 +1.7
3,675,734 - Psest_3503 0.31 +1.9
3,675,734 - Psest_3503 0.31 +0.1
3,675,734 - Psest_3503 0.31 +0.6
3,675,734 - Psest_3503 0.31 -0.1
3,675,734 - Psest_3503 0.31 -0.4
3,675,734 - Psest_3503 0.31 +0.4
3,676,015 + Psest_3503 0.45 +0.0
3,676,040 - Psest_3503 0.47 +1.0
3,676,040 - Psest_3503 0.47 -0.1
3,676,390 + Psest_3503 0.65 +0.5
3,676,390 + Psest_3503 0.65 +0.4
3,676,391 - Psest_3503 0.65 -1.0
3,676,391 - Psest_3503 0.65 +1.1
3,676,391 - Psest_3503 0.65 +0.6
3,676,391 - Psest_3503 0.65 +0.8
3,676,391 - Psest_3503 0.65 -1.1
3,676,529 + Psest_3503 0.72 +0.2
3,676,621 + Psest_3503 0.77 +0.4
3,676,621 + Psest_3503 0.77 -0.0
3,676,621 + Psest_3503 0.77 +0.5
3,676,621 + Psest_3503 0.77 -1.7
3,676,621 + Psest_3503 0.77 -0.6
3,676,621 + Psest_3503 0.77 +0.9
3,676,621 + Psest_3503 0.77 +0.9
3,676,622 - Psest_3503 0.77 +2.0
3,676,622 - Psest_3503 0.77 -2.4
3,676,622 - Psest_3503 0.77 -1.7
3,676,762 + Psest_3503 0.85 -1.6
3,676,792 + Psest_3503 0.86 -1.6
3,676,792 + Psest_3503 0.86 +0.7
3,676,849 + Psest_3503 0.89 +0.9
3,676,849 + Psest_3503 0.89 -1.5
3,676,849 + Psest_3503 0.89 +1.7
3,676,849 + Psest_3503 0.89 +0.3
3,676,849 + Psest_3503 0.89 -1.1
3,676,849 + Psest_3503 0.89 +1.9
3,677,212 + -0.8
3,677,305 + Psest_3504 0.14 -0.9
3,677,371 + Psest_3504 0.21 -0.7
3,677,371 + Psest_3504 0.21 -1.4
3,677,371 + Psest_3504 0.21 +1.4
3,677,371 + Psest_3504 0.21 -0.3
3,677,371 + Psest_3504 0.21 -0.6
3,677,372 - Psest_3504 0.21 -0.1
3,677,372 - Psest_3504 0.21 +1.6
3,677,372 - Psest_3504 0.21 +1.9
3,677,372 - Psest_3504 0.21 +0.3
3,677,372 - Psest_3504 0.21 +0.4
3,677,372 - Psest_3504 0.21 +0.9
3,677,372 - Psest_3504 0.21 +0.7
3,677,436 + Psest_3504 0.27 +1.2
3,677,436 + Psest_3504 0.27 +0.9
3,677,437 - Psest_3504 0.27 +2.6
3,677,440 + Psest_3504 0.27 -0.7
3,677,440 + Psest_3504 0.27 -0.3
3,677,441 - Psest_3504 0.27 -0.6
3,677,441 - Psest_3504 0.27 +0.7
3,677,441 - Psest_3504 0.27 -0.2
3,677,441 - Psest_3504 0.27 -1.0
3,677,441 - Psest_3504 0.27 -0.3
3,677,441 - Psest_3504 0.27 -0.1
3,677,441 - Psest_3504 0.27 +0.9
3,677,441 - Psest_3504 0.27 +1.3
3,677,442 + Psest_3504 0.27 +0.1
3,677,442 + Psest_3504 0.27 -1.4
3,677,443 - Psest_3504 0.27 -0.4
3,677,443 - Psest_3504 0.27 -1.2
3,677,443 - Psest_3504 0.27 -0.9
3,677,443 - Psest_3504 0.27 -1.2
3,677,443 - Psest_3504 0.27 +0.5
3,677,443 - Psest_3504 0.27 -0.1
3,677,443 - Psest_3504 0.27 +2.9
3,677,443 - Psest_3504 0.27 +2.5
3,677,569 + Psest_3504 0.39 -1.0
3,677,569 + Psest_3504 0.39 -0.9
3,677,569 + Psest_3504 0.39 +3.3
3,677,569 + Psest_3504 0.39 -0.4
3,677,569 + Psest_3504 0.39 +0.3
3,677,569 + Psest_3504 0.39 +2.8
3,677,570 - Psest_3504 0.39 +1.6
3,677,570 - Psest_3504 0.39 -2.8
3,677,570 - Psest_3504 0.39 -1.2
3,677,587 + Psest_3504 0.41 -1.1
3,677,593 + Psest_3504 0.41 +1.6
3,677,758 - Psest_3504 0.57 +1.5
3,677,863 + Psest_3504 0.67 -0.5
3,677,864 - Psest_3504 0.67 +0.8
3,677,887 + Psest_3504 0.69 +0.0
3,677,888 - Psest_3504 0.69 +0.4
3,677,888 - Psest_3504 0.69 -0.2
3,677,888 - Psest_3504 0.69 -2.5
3,677,891 - Psest_3504 0.69 +0.7
3,677,928 + Psest_3504 0.73 -0.1

Or see this region's nucleotide sequence