Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3497

Experiment: Thallium(I) acetate 0.08 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3495 and Psest_3496 are separated by 117 nucleotidesPsest_3496 and Psest_3497 are separated by 129 nucleotidesPsest_3497 and Psest_3498 are separated by 105 nucleotidesPsest_3498 and Psest_3499 overlap by 4 nucleotides Psest_3495: Psest_3495 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 3,668,285 to 3,669,028 _3495 Psest_3496: Psest_3496 - Predicted metal-binding protein, at 3,669,146 to 3,669,580 _3496 Psest_3497: Psest_3497 - Predicted metalloprotease, at 3,669,710 to 3,670,567 _3497 Psest_3498: Psest_3498 - haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E, at 3,670,673 to 3,671,275 _3498 Psest_3499: Psest_3499 - acyl-CoA thioesterase II, at 3,671,272 to 3,672,141 _3499 Position (kb) 3669 3670 3671Strain fitness (log2 ratio) -2 -1 0 1 2at 3668.811 kb on + strand, within Psest_3495at 3668.811 kb on + strand, within Psest_3495at 3668.811 kb on + strand, within Psest_3495at 3668.811 kb on + strand, within Psest_3495at 3668.812 kb on - strand, within Psest_3495at 3669.145 kb on + strandat 3669.145 kb on + strandat 3669.145 kb on + strandat 3669.146 kb on - strandat 3669.426 kb on + strand, within Psest_3496at 3669.426 kb on + strand, within Psest_3496at 3669.427 kb on - strand, within Psest_3496at 3669.744 kb on + strandat 3669.745 kb on - strandat 3669.809 kb on - strand, within Psest_3497at 3670.088 kb on + strand, within Psest_3497at 3670.088 kb on + strand, within Psest_3497at 3670.089 kb on - strand, within Psest_3497at 3670.181 kb on + strand, within Psest_3497at 3670.181 kb on + strand, within Psest_3497at 3670.181 kb on + strand, within Psest_3497at 3670.181 kb on + strand, within Psest_3497at 3670.182 kb on - strandat 3670.182 kb on - strand, within Psest_3497at 3670.182 kb on - strand, within Psest_3497at 3670.182 kb on - strand, within Psest_3497at 3670.565 kb on + strandat 3670.629 kb on - strandat 3670.726 kb on - strandat 3670.726 kb on - strandat 3671.077 kb on - strand, within Psest_3498at 3671.402 kb on + strand, within Psest_3499at 3671.402 kb on + strand, within Psest_3499at 3671.402 kb on + strand, within Psest_3499at 3671.402 kb on + strand, within Psest_3499at 3671.540 kb on + strand, within Psest_3499at 3671.552 kb on + strand, within Psest_3499at 3671.552 kb on + strand, within Psest_3499at 3671.552 kb on + strand, within Psest_3499at 3671.552 kb on + strand, within Psest_3499at 3671.552 kb on + strand, within Psest_3499at 3671.553 kb on - strand, within Psest_3499at 3671.553 kb on - strand, within Psest_3499at 3671.553 kb on - strand, within Psest_3499at 3671.553 kb on - strand, within Psest_3499

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.08 mg/ml
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3,668,811 + Psest_3495 0.71 -2.1
3,668,811 + Psest_3495 0.71 -0.0
3,668,811 + Psest_3495 0.71 -0.7
3,668,811 + Psest_3495 0.71 +0.6
3,668,812 - Psest_3495 0.71 +0.1
3,669,145 + -0.1
3,669,145 + -0.1
3,669,145 + -0.2
3,669,146 - -0.7
3,669,426 + Psest_3496 0.64 -1.7
3,669,426 + Psest_3496 0.64 +0.8
3,669,427 - Psest_3496 0.65 -0.5
3,669,744 + -0.9
3,669,745 - -0.5
3,669,809 - Psest_3497 0.12 -0.9
3,670,088 + Psest_3497 0.44 +0.1
3,670,088 + Psest_3497 0.44 -1.4
3,670,089 - Psest_3497 0.44 +0.2
3,670,181 + Psest_3497 0.55 -0.4
3,670,181 + Psest_3497 0.55 -2.2
3,670,181 + Psest_3497 0.55 -0.6
3,670,181 + Psest_3497 0.55 -1.1
3,670,182 - +0.2
3,670,182 - Psest_3497 0.55 -0.9
3,670,182 - Psest_3497 0.55 +0.6
3,670,182 - Psest_3497 0.55 -1.8
3,670,565 + -0.0
3,670,629 - +0.3
3,670,726 - -0.1
3,670,726 - -0.6
3,671,077 - Psest_3498 0.67 -0.2
3,671,402 + Psest_3499 0.15 -0.6
3,671,402 + Psest_3499 0.15 +1.6
3,671,402 + Psest_3499 0.15 +1.0
3,671,402 + Psest_3499 0.15 -0.3
3,671,540 + Psest_3499 0.31 -1.4
3,671,552 + Psest_3499 0.32 -1.6
3,671,552 + Psest_3499 0.32 +2.2
3,671,552 + Psest_3499 0.32 +1.4
3,671,552 + Psest_3499 0.32 -1.6
3,671,552 + Psest_3499 0.32 +0.2
3,671,553 - Psest_3499 0.32 +0.5
3,671,553 - Psest_3499 0.32 +1.1
3,671,553 - Psest_3499 0.32 +2.7
3,671,553 - Psest_3499 0.32 +0.4

Or see this region's nucleotide sequence