Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0238

Experiment: Thallium(I) acetate 0.08 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0236 and Psest_0237 are separated by 102 nucleotidesPsest_0237 and Psest_0238 are separated by 129 nucleotidesPsest_0238 and Psest_0239 are separated by 56 nucleotidesPsest_0239 and Psest_0240 are separated by 115 nucleotides Psest_0236: Psest_0236 - Predicted SAM-dependent methyltransferases, at 246,797 to 247,993 _0236 Psest_0237: Psest_0237 - intracellular protease, PfpI family, at 248,096 to 248,635 _0237 Psest_0238: Psest_0238 - Predicted signal transduction protein, at 248,765 to 249,631 _0238 Psest_0239: Psest_0239 - formamidopyrimidine-DNA glycosylase (fpg), at 249,688 to 250,500 _0239 Psest_0240: Psest_0240 - hypothetical protein, at 250,616 to 250,957 _0240 Position (kb) 248 249 250Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 247.924 kb on - strandat 247.924 kb on - strandat 247.924 kb on - strandat 248.026 kb on - strandat 248.419 kb on - strand, within Psest_0237at 248.453 kb on + strand, within Psest_0237at 248.454 kb on - strand, within Psest_0237at 248.600 kb on + strandat 248.601 kb on - strandat 249.176 kb on + strand, within Psest_0238at 249.176 kb on + strand, within Psest_0238at 249.176 kb on + strand, within Psest_0238at 249.176 kb on + strand, within Psest_0238at 249.176 kb on + strand, within Psest_0238at 249.176 kb on + strand, within Psest_0238at 249.176 kb on + strand, within Psest_0238at 249.176 kb on + strand, within Psest_0238at 249.177 kb on - strand, within Psest_0238at 249.177 kb on - strand, within Psest_0238at 249.177 kb on - strand, within Psest_0238at 249.177 kb on - strand, within Psest_0238at 249.177 kb on - strand, within Psest_0238at 249.177 kb on - strand, within Psest_0238at 249.177 kb on - strand, within Psest_0238at 249.177 kb on - strand, within Psest_0238at 249.177 kb on - strand, within Psest_0238at 249.177 kb on - strand, within Psest_0238at 249.196 kb on + strand, within Psest_0238at 249.197 kb on - strand, within Psest_0238at 249.260 kb on + strand, within Psest_0238at 249.261 kb on - strand, within Psest_0238at 249.261 kb on - strand, within Psest_0238at 249.338 kb on + strand, within Psest_0238at 249.338 kb on + strand, within Psest_0238at 249.339 kb on - strand, within Psest_0238at 249.339 kb on - strand, within Psest_0238at 249.339 kb on - strand, within Psest_0238at 249.563 kb on + strandat 249.563 kb on + strandat 249.563 kb on + strandat 249.564 kb on - strandat 249.564 kb on - strandat 249.581 kb on + strandat 249.581 kb on + strandat 249.674 kb on - strandat 249.862 kb on + strand, within Psest_0239at 249.909 kb on + strand, within Psest_0239at 250.004 kb on - strand, within Psest_0239at 250.197 kb on + strand, within Psest_0239at 250.197 kb on + strand, within Psest_0239at 250.198 kb on - strand, within Psest_0239at 250.198 kb on - strand, within Psest_0239at 250.198 kb on - strand, within Psest_0239at 250.198 kb on - strand, within Psest_0239at 250.198 kb on - strand, within Psest_0239at 250.201 kb on + strand, within Psest_0239at 250.201 kb on + strand, within Psest_0239at 250.201 kb on + strand, within Psest_0239at 250.201 kb on + strand, within Psest_0239at 250.201 kb on + strand, within Psest_0239at 250.201 kb on + strand, within Psest_0239at 250.201 kb on + strand, within Psest_0239at 250.201 kb on + strand, within Psest_0239at 250.201 kb on + strand, within Psest_0239at 250.201 kb on + strand, within Psest_0239at 250.202 kb on - strand, within Psest_0239at 250.202 kb on - strand, within Psest_0239at 250.202 kb on - strand, within Psest_0239at 250.202 kb on - strand, within Psest_0239at 250.202 kb on - strand, within Psest_0239at 250.202 kb on - strand, within Psest_0239at 250.202 kb on - strand, within Psest_0239at 250.477 kb on + strandat 250.560 kb on + strandat 250.560 kb on + strandat 250.560 kb on + strandat 250.560 kb on + strandat 250.560 kb on + strandat 250.561 kb on - strandat 250.561 kb on - strandat 250.561 kb on - strandat 250.561 kb on - strandat 250.561 kb on - strandat 250.561 kb on - strandat 250.561 kb on - strandat 250.561 kb on - strandat 250.561 kb on - strandat 250.561 kb on - strandat 250.561 kb on - strandat 250.561 kb on - strandat 250.562 kb on + strandat 250.563 kb on - strandat 250.563 kb on - strandat 250.563 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.08 mg/ml
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247,924 - +0.8
247,924 - -0.7
247,924 - -1.2
248,026 - +0.2
248,419 - Psest_0237 0.60 +0.1
248,453 + Psest_0237 0.66 +0.1
248,454 - Psest_0237 0.66 -1.4
248,600 + +0.7
248,601 - -0.0
249,176 + Psest_0238 0.47 -0.3
249,176 + Psest_0238 0.47 +0.8
249,176 + Psest_0238 0.47 +0.6
249,176 + Psest_0238 0.47 +1.2
249,176 + Psest_0238 0.47 +0.6
249,176 + Psest_0238 0.47 +0.6
249,176 + Psest_0238 0.47 -0.2
249,176 + Psest_0238 0.47 -1.7
249,177 - Psest_0238 0.48 +0.1
249,177 - Psest_0238 0.48 +2.1
249,177 - Psest_0238 0.48 -0.2
249,177 - Psest_0238 0.48 -0.7
249,177 - Psest_0238 0.48 +1.7
249,177 - Psest_0238 0.48 +0.6
249,177 - Psest_0238 0.48 +3.2
249,177 - Psest_0238 0.48 -0.6
249,177 - Psest_0238 0.48 -2.1
249,177 - Psest_0238 0.48 +0.1
249,196 + Psest_0238 0.50 +0.6
249,197 - Psest_0238 0.50 +0.5
249,260 + Psest_0238 0.57 +1.4
249,261 - Psest_0238 0.57 +0.6
249,261 - Psest_0238 0.57 -1.3
249,338 + Psest_0238 0.66 +1.3
249,338 + Psest_0238 0.66 -1.8
249,339 - Psest_0238 0.66 +1.3
249,339 - Psest_0238 0.66 -1.3
249,339 - Psest_0238 0.66 +0.2
249,563 + +1.3
249,563 + +1.1
249,563 + -0.6
249,564 - +0.2
249,564 - +0.9
249,581 + +1.0
249,581 + +0.8
249,674 - -1.5
249,862 + Psest_0239 0.21 -0.6
249,909 + Psest_0239 0.27 +0.7
250,004 - Psest_0239 0.39 -1.1
250,197 + Psest_0239 0.63 -0.8
250,197 + Psest_0239 0.63 +1.6
250,198 - Psest_0239 0.63 -1.0
250,198 - Psest_0239 0.63 +0.2
250,198 - Psest_0239 0.63 +0.9
250,198 - Psest_0239 0.63 -1.5
250,198 - Psest_0239 0.63 +0.5
250,201 + Psest_0239 0.63 -0.8
250,201 + Psest_0239 0.63 -0.7
250,201 + Psest_0239 0.63 -0.5
250,201 + Psest_0239 0.63 -0.4
250,201 + Psest_0239 0.63 +0.2
250,201 + Psest_0239 0.63 -0.2
250,201 + Psest_0239 0.63 -2.0
250,201 + Psest_0239 0.63 +0.5
250,201 + Psest_0239 0.63 -1.9
250,201 + Psest_0239 0.63 +0.5
250,202 - Psest_0239 0.63 +0.3
250,202 - Psest_0239 0.63 +0.8
250,202 - Psest_0239 0.63 +1.2
250,202 - Psest_0239 0.63 +0.4
250,202 - Psest_0239 0.63 -0.9
250,202 - Psest_0239 0.63 -0.1
250,202 - Psest_0239 0.63 -0.8
250,477 + -1.7
250,560 + -0.7
250,560 + -0.1
250,560 + +0.6
250,560 + -0.2
250,560 + -0.2
250,561 - +1.3
250,561 - +0.2
250,561 - -1.2
250,561 - -1.0
250,561 - +0.6
250,561 - +1.8
250,561 - +1.0
250,561 - +1.2
250,561 - +0.2
250,561 - +1.3
250,561 - -0.9
250,561 - +0.3
250,562 + +0.8
250,563 - -0.9
250,563 - -1.0
250,563 - -3.1

Or see this region's nucleotide sequence