Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2399

Experiment: Thallium(I) acetate 0.08 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2397 and Psest_2398 overlap by 4 nucleotidesPsest_2398 and Psest_2399 overlap by 4 nucleotidesPsest_2399 and Psest_2400 are separated by 2 nucleotides Psest_2397: Psest_2397 - Deoxyribodipyrimidine photolyase, at 2,549,978 to 2,551,408 _2397 Psest_2398: Psest_2398 - SnoaL-like polyketide cyclase., at 2,551,405 to 2,551,833 _2398 Psest_2399: Psest_2399 - Short-chain dehydrogenases of various substrate specificities, at 2,551,830 to 2,552,597 _2399 Psest_2400: Psest_2400 - Predicted NAD/FAD-binding protein, at 2,552,600 to 2,553,847 _2400 Position (kb) 2551 2552 2553Strain fitness (log2 ratio) -2 -1 0 1 2at 2550.833 kb on + strand, within Psest_2397at 2550.834 kb on - strand, within Psest_2397at 2550.834 kb on - strand, within Psest_2397at 2550.834 kb on - strand, within Psest_2397at 2550.834 kb on - strand, within Psest_2397at 2550.924 kb on - strand, within Psest_2397at 2551.483 kb on + strand, within Psest_2398at 2551.484 kb on - strand, within Psest_2398at 2551.549 kb on + strand, within Psest_2398at 2551.550 kb on - strand, within Psest_2398at 2551.564 kb on + strand, within Psest_2398at 2551.564 kb on + strand, within Psest_2398at 2551.564 kb on + strand, within Psest_2398at 2551.630 kb on + strand, within Psest_2398at 2551.630 kb on + strand, within Psest_2398at 2551.750 kb on + strand, within Psest_2398at 2551.751 kb on - strand, within Psest_2398at 2551.774 kb on + strand, within Psest_2398at 2551.775 kb on - strand, within Psest_2398at 2552.100 kb on + strand, within Psest_2399at 2552.100 kb on + strand, within Psest_2399at 2552.100 kb on + strand, within Psest_2399at 2552.100 kb on + strand, within Psest_2399at 2552.100 kb on + strand, within Psest_2399at 2552.100 kb on + strand, within Psest_2399at 2552.101 kb on - strand, within Psest_2399at 2552.144 kb on + strand, within Psest_2399at 2552.212 kb on + strand, within Psest_2399at 2552.212 kb on + strand, within Psest_2399at 2552.213 kb on - strand, within Psest_2399at 2552.213 kb on - strand, within Psest_2399at 2552.233 kb on + strand, within Psest_2399at 2552.234 kb on - strand, within Psest_2399at 2552.277 kb on + strand, within Psest_2399at 2552.277 kb on + strand, within Psest_2399at 2552.278 kb on - strand, within Psest_2399at 2552.353 kb on + strand, within Psest_2399at 2552.353 kb on + strand, within Psest_2399at 2552.353 kb on + strand, within Psest_2399at 2552.354 kb on - strand, within Psest_2399at 2552.354 kb on - strand, within Psest_2399at 2552.354 kb on - strand, within Psest_2399at 2552.354 kb on - strand, within Psest_2399at 2552.831 kb on + strand, within Psest_2400at 2552.832 kb on - strand, within Psest_2400at 2552.885 kb on + strand, within Psest_2400at 2552.886 kb on - strand, within Psest_2400at 2552.886 kb on - strand, within Psest_2400at 2552.886 kb on - strand, within Psest_2400at 2552.999 kb on + strand, within Psest_2400at 2553.041 kb on + strand, within Psest_2400at 2553.041 kb on + strand, within Psest_2400at 2553.041 kb on + strand, within Psest_2400at 2553.042 kb on - strand, within Psest_2400at 2553.042 kb on - strand, within Psest_2400at 2553.060 kb on - strand, within Psest_2400at 2553.083 kb on + strand, within Psest_2400at 2553.083 kb on + strand, within Psest_2400at 2553.083 kb on + strand, within Psest_2400at 2553.083 kb on + strand, within Psest_2400at 2553.083 kb on + strand, within Psest_2400at 2553.083 kb on + strand, within Psest_2400at 2553.084 kb on - strand, within Psest_2400at 2553.084 kb on - strand, within Psest_2400at 2553.084 kb on - strand, within Psest_2400at 2553.084 kb on - strand, within Psest_2400at 2553.084 kb on - strand, within Psest_2400at 2553.084 kb on - strand, within Psest_2400at 2553.219 kb on + strand, within Psest_2400at 2553.219 kb on + strand, within Psest_2400at 2553.219 kb on + strand, within Psest_2400at 2553.219 kb on + strand, within Psest_2400at 2553.219 kb on + strand, within Psest_2400at 2553.240 kb on - strand, within Psest_2400at 2553.240 kb on - strand, within Psest_2400at 2553.530 kb on + strand, within Psest_2400at 2553.531 kb on - strand, within Psest_2400at 2553.572 kb on + strand, within Psest_2400at 2553.572 kb on + strand, within Psest_2400at 2553.572 kb on + strand, within Psest_2400at 2553.572 kb on + strand, within Psest_2400at 2553.572 kb on + strand, within Psest_2400at 2553.573 kb on - strand, within Psest_2400at 2553.573 kb on - strand, within Psest_2400at 2553.573 kb on - strand, within Psest_2400at 2553.573 kb on - strand, within Psest_2400

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.08 mg/ml
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2,550,833 + Psest_2397 0.60 -0.0
2,550,834 - Psest_2397 0.60 +1.2
2,550,834 - Psest_2397 0.60 -2.0
2,550,834 - Psest_2397 0.60 +2.0
2,550,834 - Psest_2397 0.60 -0.9
2,550,924 - Psest_2397 0.66 +2.3
2,551,483 + Psest_2398 0.18 -1.0
2,551,484 - Psest_2398 0.18 -0.3
2,551,549 + Psest_2398 0.34 +0.3
2,551,550 - Psest_2398 0.34 -0.7
2,551,564 + Psest_2398 0.37 -0.4
2,551,564 + Psest_2398 0.37 +0.2
2,551,564 + Psest_2398 0.37 +0.9
2,551,630 + Psest_2398 0.52 -0.2
2,551,630 + Psest_2398 0.52 +0.2
2,551,750 + Psest_2398 0.80 +1.8
2,551,751 - Psest_2398 0.81 -0.8
2,551,774 + Psest_2398 0.86 -0.4
2,551,775 - Psest_2398 0.86 +0.3
2,552,100 + Psest_2399 0.35 -0.8
2,552,100 + Psest_2399 0.35 +0.1
2,552,100 + Psest_2399 0.35 +1.4
2,552,100 + Psest_2399 0.35 -2.2
2,552,100 + Psest_2399 0.35 -0.6
2,552,100 + Psest_2399 0.35 -0.8
2,552,101 - Psest_2399 0.35 -1.5
2,552,144 + Psest_2399 0.41 -0.5
2,552,212 + Psest_2399 0.50 -0.1
2,552,212 + Psest_2399 0.50 -0.1
2,552,213 - Psest_2399 0.50 -0.7
2,552,213 - Psest_2399 0.50 -1.2
2,552,233 + Psest_2399 0.52 -1.0
2,552,234 - Psest_2399 0.53 -0.5
2,552,277 + Psest_2399 0.58 -1.5
2,552,277 + Psest_2399 0.58 -0.0
2,552,278 - Psest_2399 0.58 -0.2
2,552,353 + Psest_2399 0.68 +0.4
2,552,353 + Psest_2399 0.68 -0.4
2,552,353 + Psest_2399 0.68 -0.5
2,552,354 - Psest_2399 0.68 -1.2
2,552,354 - Psest_2399 0.68 -1.5
2,552,354 - Psest_2399 0.68 -0.5
2,552,354 - Psest_2399 0.68 -1.1
2,552,831 + Psest_2400 0.19 +0.0
2,552,832 - Psest_2400 0.19 -0.3
2,552,885 + Psest_2400 0.23 +1.1
2,552,886 - Psest_2400 0.23 -1.3
2,552,886 - Psest_2400 0.23 -0.7
2,552,886 - Psest_2400 0.23 +0.9
2,552,999 + Psest_2400 0.32 +0.6
2,553,041 + Psest_2400 0.35 -1.2
2,553,041 + Psest_2400 0.35 -0.1
2,553,041 + Psest_2400 0.35 +1.4
2,553,042 - Psest_2400 0.35 -1.0
2,553,042 - Psest_2400 0.35 -1.2
2,553,060 - Psest_2400 0.37 +0.6
2,553,083 + Psest_2400 0.39 +0.4
2,553,083 + Psest_2400 0.39 -0.8
2,553,083 + Psest_2400 0.39 -0.5
2,553,083 + Psest_2400 0.39 +0.2
2,553,083 + Psest_2400 0.39 -1.3
2,553,083 + Psest_2400 0.39 +1.0
2,553,084 - Psest_2400 0.39 +2.1
2,553,084 - Psest_2400 0.39 -2.0
2,553,084 - Psest_2400 0.39 +2.5
2,553,084 - Psest_2400 0.39 +0.3
2,553,084 - Psest_2400 0.39 -1.1
2,553,084 - Psest_2400 0.39 -2.2
2,553,219 + Psest_2400 0.50 -0.4
2,553,219 + Psest_2400 0.50 -1.7
2,553,219 + Psest_2400 0.50 -0.3
2,553,219 + Psest_2400 0.50 -1.7
2,553,219 + Psest_2400 0.50 -2.3
2,553,240 - Psest_2400 0.51 +0.4
2,553,240 - Psest_2400 0.51 -0.3
2,553,530 + Psest_2400 0.75 +0.6
2,553,531 - Psest_2400 0.75 +0.8
2,553,572 + Psest_2400 0.78 +1.1
2,553,572 + Psest_2400 0.78 -0.1
2,553,572 + Psest_2400 0.78 +0.3
2,553,572 + Psest_2400 0.78 +0.8
2,553,572 + Psest_2400 0.78 -2.2
2,553,573 - Psest_2400 0.78 +0.4
2,553,573 - Psest_2400 0.78 +0.7
2,553,573 - Psest_2400 0.78 +1.0
2,553,573 - Psest_2400 0.78 +1.7

Or see this region's nucleotide sequence