Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3935

Experiment: sodium fluoride 8.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3933 and Psest_3934 are separated by 52 nucleotidesPsest_3934 and Psest_3935 are separated by 90 nucleotidesPsest_3935 and Psest_3936 are separated by 137 nucleotidesPsest_3936 and Psest_3937 are separated by 90 nucleotides Psest_3933: Psest_3933 - hypothetical protein, at 4,105,260 to 4,105,655 _3933 Psest_3934: Psest_3934 - rRNA methylase, putative, group 2, at 4,105,708 to 4,106,190 _3934 Psest_3935: Psest_3935 - oxidoreductase alpha (molybdopterin) subunit, at 4,106,281 to 4,108,653 _3935 Psest_3936: Psest_3936 - ATP-dependent protease HslVU, peptidase subunit, at 4,108,791 to 4,109,327 _3936 Psest_3937: Psest_3937 - ATP-dependent protease HslVU, ATPase subunit, at 4,109,418 to 4,110,761 _3937 Position (kb) 4106 4107 4108 4109Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 4105.389 kb on + strand, within Psest_3933at 4105.390 kb on - strand, within Psest_3933at 4105.390 kb on - strand, within Psest_3933at 4105.416 kb on + strand, within Psest_3933at 4105.492 kb on + strand, within Psest_3933at 4105.492 kb on + strand, within Psest_3933at 4105.492 kb on + strand, within Psest_3933at 4105.492 kb on + strand, within Psest_3933at 4105.492 kb on + strand, within Psest_3933at 4105.492 kb on + strand, within Psest_3933at 4105.492 kb on + strand, within Psest_3933at 4105.492 kb on + strand, within Psest_3933at 4105.493 kb on - strand, within Psest_3933at 4105.493 kb on - strand, within Psest_3933at 4105.493 kb on - strand, within Psest_3933at 4105.493 kb on - strand, within Psest_3933at 4105.493 kb on - strand, within Psest_3933at 4105.493 kb on - strand, within Psest_3933at 4105.493 kb on - strand, within Psest_3933at 4105.493 kb on - strand, within Psest_3933at 4105.493 kb on - strand, within Psest_3933at 4105.493 kb on - strand, within Psest_3933at 4105.493 kb on - strand, within Psest_3933at 4105.493 kb on - strand, within Psest_3933at 4105.493 kb on - strand, within Psest_3933at 4105.493 kb on - strand, within Psest_3933at 4105.493 kb on - strand, within Psest_3933at 4105.493 kb on - strand, within Psest_3933at 4105.493 kb on - strand, within Psest_3933at 4105.493 kb on - strand, within Psest_3933at 4105.493 kb on - strand, within Psest_3933at 4105.493 kb on - strand, within Psest_3933at 4105.493 kb on - strand, within Psest_3933at 4105.494 kb on + strand, within Psest_3933at 4105.494 kb on + strand, within Psest_3933at 4105.494 kb on + strand, within Psest_3933at 4105.494 kb on + strand, within Psest_3933at 4105.494 kb on + strand, within Psest_3933at 4105.495 kb on - strand, within Psest_3933at 4105.495 kb on - strand, within Psest_3933at 4105.761 kb on + strand, within Psest_3934at 4105.761 kb on + strand, within Psest_3934at 4105.817 kb on - strand, within Psest_3934at 4105.867 kb on + strand, within Psest_3934at 4105.867 kb on + strand, within Psest_3934at 4105.868 kb on - strand, within Psest_3934at 4105.963 kb on - strand, within Psest_3934at 4106.152 kb on + strandat 4106.152 kb on + strandat 4106.153 kb on - strandat 4106.153 kb on - strandat 4106.196 kb on - strandat 4106.196 kb on - strandat 4106.196 kb on - strandat 4106.339 kb on - strandat 4106.339 kb on - strandat 4106.650 kb on + strand, within Psest_3935at 4106.651 kb on - strand, within Psest_3935at 4106.734 kb on + strand, within Psest_3935at 4106.734 kb on + strand, within Psest_3935at 4106.734 kb on + strand, within Psest_3935at 4106.734 kb on + strand, within Psest_3935at 4106.734 kb on + strand, within Psest_3935at 4106.734 kb on + strand, within Psest_3935at 4106.734 kb on + strand, within Psest_3935at 4106.734 kb on + strand, within Psest_3935at 4106.734 kb on + strand, within Psest_3935at 4106.734 kb on + strand, within Psest_3935at 4106.734 kb on + strand, within Psest_3935at 4106.734 kb on + strand, within Psest_3935at 4106.734 kb on + strand, within Psest_3935at 4106.734 kb on + strand, within Psest_3935at 4106.734 kb on + strand, within Psest_3935at 4106.734 kb on + strand, within Psest_3935at 4106.735 kb on - strand, within Psest_3935at 4106.735 kb on - strand, within Psest_3935at 4106.735 kb on - strand, within Psest_3935at 4106.735 kb on - strand, within Psest_3935at 4106.735 kb on - strand, within Psest_3935at 4106.735 kb on - strand, within Psest_3935at 4106.735 kb on - strand, within Psest_3935at 4106.735 kb on - strand, within Psest_3935at 4106.735 kb on - strand, within Psest_3935at 4106.735 kb on - strand, within Psest_3935at 4106.735 kb on - strand, within Psest_3935at 4106.735 kb on - strand, within Psest_3935at 4106.767 kb on + strand, within Psest_3935at 4106.767 kb on + strand, within Psest_3935at 4106.767 kb on + strand, within Psest_3935at 4106.767 kb on + strand, within Psest_3935at 4106.767 kb on + strand, within Psest_3935at 4106.767 kb on + strand, within Psest_3935at 4106.767 kb on + strand, within Psest_3935at 4106.767 kb on + strand, within Psest_3935at 4106.767 kb on + strand, within Psest_3935at 4106.768 kb on - strand, within Psest_3935at 4106.768 kb on - strand, within Psest_3935at 4106.768 kb on - strand, within Psest_3935at 4106.773 kb on + strand, within Psest_3935at 4106.773 kb on + strand, within Psest_3935at 4106.773 kb on + strand, within Psest_3935at 4106.773 kb on + strand, within Psest_3935at 4106.773 kb on + strand, within Psest_3935at 4106.773 kb on + strand, within Psest_3935at 4106.773 kb on + strand, within Psest_3935at 4106.773 kb on + strand, within Psest_3935at 4106.773 kb on + strand, within Psest_3935at 4106.773 kb on + strand, within Psest_3935at 4106.773 kb on + strand, within Psest_3935at 4106.773 kb on + strand, within Psest_3935at 4106.773 kb on + strand, within Psest_3935at 4106.773 kb on + strand, within Psest_3935at 4106.773 kb on + strand, within Psest_3935at 4106.773 kb on + strand, within Psest_3935at 4106.773 kb on + strand, within Psest_3935at 4106.773 kb on + strand, within Psest_3935at 4106.773 kb on + strand, within Psest_3935at 4106.773 kb on + strand, within Psest_3935at 4106.773 kb on + strand, within Psest_3935at 4106.773 kb on + strand, within Psest_3935at 4106.773 kb on + strand, within Psest_3935at 4106.773 kb on + strand, within Psest_3935at 4106.773 kb on + strand, within Psest_3935at 4106.774 kb on - strand, within Psest_3935at 4106.774 kb on - strand, within Psest_3935at 4106.774 kb on - strand, within Psest_3935at 4106.774 kb on - strand, within Psest_3935at 4106.774 kb on - strand, within Psest_3935at 4106.774 kb on - strand, within Psest_3935at 4106.774 kb on - strand, within Psest_3935at 4106.774 kb on - strand, within Psest_3935at 4106.774 kb on - strand, within Psest_3935at 4106.774 kb on - strand, within Psest_3935at 4106.774 kb on - strand, within Psest_3935at 4106.774 kb on - strand, within Psest_3935at 4106.774 kb on - strand, within Psest_3935at 4106.794 kb on + strand, within Psest_3935at 4106.794 kb on + strand, within Psest_3935at 4107.220 kb on - strand, within Psest_3935at 4107.280 kb on + strand, within Psest_3935at 4107.280 kb on + strand, within Psest_3935at 4107.280 kb on + strand, within Psest_3935at 4107.747 kb on - strand, within Psest_3935at 4107.799 kb on + strand, within Psest_3935at 4107.799 kb on + strand, within Psest_3935at 4107.799 kb on + strand, within Psest_3935at 4107.799 kb on + strand, within Psest_3935at 4107.799 kb on + strand, within Psest_3935at 4107.799 kb on + strand, within Psest_3935at 4107.800 kb on - strand, within Psest_3935at 4107.800 kb on - strand, within Psest_3935at 4107.800 kb on - strand, within Psest_3935at 4107.800 kb on - strand, within Psest_3935at 4107.800 kb on - strand, within Psest_3935at 4107.800 kb on - strand, within Psest_3935at 4107.800 kb on - strand, within Psest_3935at 4107.800 kb on - strand, within Psest_3935at 4107.800 kb on - strand, within Psest_3935at 4107.800 kb on - strand, within Psest_3935at 4107.800 kb on - strand, within Psest_3935at 4107.800 kb on - strand, within Psest_3935at 4107.800 kb on - strand, within Psest_3935at 4107.800 kb on - strand, within Psest_3935at 4107.800 kb on - strand, within Psest_3935at 4107.800 kb on - strand, within Psest_3935at 4107.801 kb on + strand, within Psest_3935at 4107.801 kb on + strand, within Psest_3935at 4107.802 kb on - strand, within Psest_3935at 4107.926 kb on + strand, within Psest_3935at 4107.926 kb on + strand, within Psest_3935at 4107.926 kb on + strand, within Psest_3935at 4107.926 kb on + strand, within Psest_3935at 4108.018 kb on + strand, within Psest_3935at 4108.019 kb on - strand, within Psest_3935at 4108.019 kb on - strand, within Psest_3935at 4108.229 kb on + strand, within Psest_3935at 4108.229 kb on + strand, within Psest_3935at 4108.229 kb on + strand, within Psest_3935at 4108.230 kb on - strand, within Psest_3935at 4108.230 kb on - strand, within Psest_3935at 4108.230 kb on - strand, within Psest_3935at 4108.279 kb on + strand, within Psest_3935at 4108.279 kb on + strand, within Psest_3935at 4108.280 kb on - strand, within Psest_3935at 4108.447 kb on + strandat 4108.447 kb on + strandat 4108.447 kb on + strandat 4108.447 kb on + strandat 4108.448 kb on - strandat 4108.448 kb on - strandat 4108.477 kb on + strandat 4108.683 kb on + strandat 4108.684 kb on - strandat 4108.742 kb on + strandat 4108.906 kb on - strand, within Psest_3936at 4108.906 kb on - strand, within Psest_3936at 4108.906 kb on - strand, within Psest_3936at 4108.906 kb on - strand, within Psest_3936at 4108.919 kb on - strand, within Psest_3936at 4108.919 kb on - strand, within Psest_3936at 4109.303 kb on - strandat 4109.303 kb on - strandat 4109.362 kb on + strandat 4109.363 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 8.5 mM
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4,105,389 + Psest_3933 0.33 +1.3
4,105,390 - Psest_3933 0.33 -0.5
4,105,390 - Psest_3933 0.33 -2.1
4,105,416 + Psest_3933 0.39 -0.6
4,105,492 + Psest_3933 0.59 +1.0
4,105,492 + Psest_3933 0.59 -0.5
4,105,492 + Psest_3933 0.59 +0.5
4,105,492 + Psest_3933 0.59 +0.5
4,105,492 + Psest_3933 0.59 +0.4
4,105,492 + Psest_3933 0.59 +1.2
4,105,492 + Psest_3933 0.59 +1.6
4,105,492 + Psest_3933 0.59 -2.0
4,105,493 - Psest_3933 0.59 +2.0
4,105,493 - Psest_3933 0.59 +0.0
4,105,493 - Psest_3933 0.59 -0.6
4,105,493 - Psest_3933 0.59 +1.3
4,105,493 - Psest_3933 0.59 +0.7
4,105,493 - Psest_3933 0.59 +1.8
4,105,493 - Psest_3933 0.59 -2.7
4,105,493 - Psest_3933 0.59 +0.6
4,105,493 - Psest_3933 0.59 +1.0
4,105,493 - Psest_3933 0.59 -0.7
4,105,493 - Psest_3933 0.59 +2.5
4,105,493 - Psest_3933 0.59 -0.8
4,105,493 - Psest_3933 0.59 -1.2
4,105,493 - Psest_3933 0.59 -0.8
4,105,493 - Psest_3933 0.59 +0.5
4,105,493 - Psest_3933 0.59 -0.2
4,105,493 - Psest_3933 0.59 +0.2
4,105,493 - Psest_3933 0.59 +5.2
4,105,493 - Psest_3933 0.59 -1.1
4,105,493 - Psest_3933 0.59 +1.1
4,105,493 - Psest_3933 0.59 +0.0
4,105,494 + Psest_3933 0.59 -2.9
4,105,494 + Psest_3933 0.59 +0.8
4,105,494 + Psest_3933 0.59 -0.8
4,105,494 + Psest_3933 0.59 -0.9
4,105,494 + Psest_3933 0.59 +1.7
4,105,495 - Psest_3933 0.59 -1.3
4,105,495 - Psest_3933 0.59 +0.1
4,105,761 + Psest_3934 0.11 +0.4
4,105,761 + Psest_3934 0.11 -2.4
4,105,817 - Psest_3934 0.23 -1.7
4,105,867 + Psest_3934 0.33 +0.5
4,105,867 + Psest_3934 0.33 +1.0
4,105,868 - Psest_3934 0.33 -1.3
4,105,963 - Psest_3934 0.53 -1.5
4,106,152 + -1.7
4,106,152 + +0.8
4,106,153 - -2.6
4,106,153 - -0.8
4,106,196 - +1.0
4,106,196 - -0.0
4,106,196 - -0.8
4,106,339 - +0.3
4,106,339 - +0.0
4,106,650 + Psest_3935 0.16 -0.7
4,106,651 - Psest_3935 0.16 -0.5
4,106,734 + Psest_3935 0.19 +0.3
4,106,734 + Psest_3935 0.19 +0.5
4,106,734 + Psest_3935 0.19 +0.9
4,106,734 + Psest_3935 0.19 +1.2
4,106,734 + Psest_3935 0.19 +2.1
4,106,734 + Psest_3935 0.19 -1.6
4,106,734 + Psest_3935 0.19 +0.5
4,106,734 + Psest_3935 0.19 +0.5
4,106,734 + Psest_3935 0.19 -0.5
4,106,734 + Psest_3935 0.19 +0.9
4,106,734 + Psest_3935 0.19 +0.3
4,106,734 + Psest_3935 0.19 +0.3
4,106,734 + Psest_3935 0.19 -0.7
4,106,734 + Psest_3935 0.19 +0.5
4,106,734 + Psest_3935 0.19 +0.1
4,106,734 + Psest_3935 0.19 +0.8
4,106,735 - Psest_3935 0.19 -0.1
4,106,735 - Psest_3935 0.19 -0.5
4,106,735 - Psest_3935 0.19 -1.9
4,106,735 - Psest_3935 0.19 +0.2
4,106,735 - Psest_3935 0.19 +1.2
4,106,735 - Psest_3935 0.19 -1.5
4,106,735 - Psest_3935 0.19 -1.4
4,106,735 - Psest_3935 0.19 -2.0
4,106,735 - Psest_3935 0.19 -2.7
4,106,735 - Psest_3935 0.19 +0.6
4,106,735 - Psest_3935 0.19 -1.5
4,106,735 - Psest_3935 0.19 -0.1
4,106,767 + Psest_3935 0.20 +0.7
4,106,767 + Psest_3935 0.20 +0.5
4,106,767 + Psest_3935 0.20 -0.5
4,106,767 + Psest_3935 0.20 +1.3
4,106,767 + Psest_3935 0.20 +0.0
4,106,767 + Psest_3935 0.20 -3.0
4,106,767 + Psest_3935 0.20 -0.5
4,106,767 + Psest_3935 0.20 -0.8
4,106,767 + Psest_3935 0.20 -1.4
4,106,768 - Psest_3935 0.21 +0.9
4,106,768 - Psest_3935 0.21 +1.3
4,106,768 - Psest_3935 0.21 -1.6
4,106,773 + Psest_3935 0.21 -0.0
4,106,773 + Psest_3935 0.21 -0.5
4,106,773 + Psest_3935 0.21 +1.1
4,106,773 + Psest_3935 0.21 +0.5
4,106,773 + Psest_3935 0.21 -0.6
4,106,773 + Psest_3935 0.21 -0.0
4,106,773 + Psest_3935 0.21 +1.1
4,106,773 + Psest_3935 0.21 -1.4
4,106,773 + Psest_3935 0.21 +0.8
4,106,773 + Psest_3935 0.21 -0.9
4,106,773 + Psest_3935 0.21 -1.0
4,106,773 + Psest_3935 0.21 -0.9
4,106,773 + Psest_3935 0.21 -1.0
4,106,773 + Psest_3935 0.21 -1.4
4,106,773 + Psest_3935 0.21 +0.0
4,106,773 + Psest_3935 0.21 +0.0
4,106,773 + Psest_3935 0.21 -1.2
4,106,773 + Psest_3935 0.21 +0.2
4,106,773 + Psest_3935 0.21 +2.0
4,106,773 + Psest_3935 0.21 +0.3
4,106,773 + Psest_3935 0.21 +0.3
4,106,773 + Psest_3935 0.21 -0.2
4,106,773 + Psest_3935 0.21 -2.0
4,106,773 + Psest_3935 0.21 -0.4
4,106,773 + Psest_3935 0.21 -1.5
4,106,774 - Psest_3935 0.21 -1.8
4,106,774 - Psest_3935 0.21 +0.4
4,106,774 - Psest_3935 0.21 +0.2
4,106,774 - Psest_3935 0.21 -0.4
4,106,774 - Psest_3935 0.21 +1.1
4,106,774 - Psest_3935 0.21 -1.4
4,106,774 - Psest_3935 0.21 -0.4
4,106,774 - Psest_3935 0.21 -0.1
4,106,774 - Psest_3935 0.21 -2.2
4,106,774 - Psest_3935 0.21 -1.8
4,106,774 - Psest_3935 0.21 -1.0
4,106,774 - Psest_3935 0.21 -1.7
4,106,774 - Psest_3935 0.21 +1.7
4,106,794 + Psest_3935 0.22 +0.1
4,106,794 + Psest_3935 0.22 -1.5
4,107,220 - Psest_3935 0.40 -0.6
4,107,280 + Psest_3935 0.42 +0.2
4,107,280 + Psest_3935 0.42 -0.9
4,107,280 + Psest_3935 0.42 -0.9
4,107,747 - Psest_3935 0.62 -0.5
4,107,799 + Psest_3935 0.64 +0.6
4,107,799 + Psest_3935 0.64 +1.2
4,107,799 + Psest_3935 0.64 +0.1
4,107,799 + Psest_3935 0.64 -1.1
4,107,799 + Psest_3935 0.64 +1.7
4,107,799 + Psest_3935 0.64 -2.2
4,107,800 - Psest_3935 0.64 -0.1
4,107,800 - Psest_3935 0.64 -0.8
4,107,800 - Psest_3935 0.64 -0.5
4,107,800 - Psest_3935 0.64 -2.1
4,107,800 - Psest_3935 0.64 +0.1
4,107,800 - Psest_3935 0.64 -1.0
4,107,800 - Psest_3935 0.64 -0.9
4,107,800 - Psest_3935 0.64 -0.4
4,107,800 - Psest_3935 0.64 +0.9
4,107,800 - Psest_3935 0.64 -0.9
4,107,800 - Psest_3935 0.64 -0.6
4,107,800 - Psest_3935 0.64 -0.2
4,107,800 - Psest_3935 0.64 -1.1
4,107,800 - Psest_3935 0.64 +1.9
4,107,800 - Psest_3935 0.64 -0.0
4,107,800 - Psest_3935 0.64 -2.9
4,107,801 + Psest_3935 0.64 -3.1
4,107,801 + Psest_3935 0.64 +0.7
4,107,802 - Psest_3935 0.64 -0.4
4,107,926 + Psest_3935 0.69 +1.4
4,107,926 + Psest_3935 0.69 +0.0
4,107,926 + Psest_3935 0.69 +1.0
4,107,926 + Psest_3935 0.69 +0.8
4,108,018 + Psest_3935 0.73 -0.1
4,108,019 - Psest_3935 0.73 -0.5
4,108,019 - Psest_3935 0.73 -1.1
4,108,229 + Psest_3935 0.82 +0.9
4,108,229 + Psest_3935 0.82 -1.8
4,108,229 + Psest_3935 0.82 -0.9
4,108,230 - Psest_3935 0.82 -0.7
4,108,230 - Psest_3935 0.82 +0.4
4,108,230 - Psest_3935 0.82 +1.0
4,108,279 + Psest_3935 0.84 -1.3
4,108,279 + Psest_3935 0.84 +0.3
4,108,280 - Psest_3935 0.84 -0.4
4,108,447 + -1.8
4,108,447 + -1.3
4,108,447 + -0.5
4,108,447 + -1.2
4,108,448 - -0.7
4,108,448 - -1.0
4,108,477 + +1.6
4,108,683 + +0.7
4,108,684 - -1.9
4,108,742 + -0.3
4,108,906 - Psest_3936 0.21 -1.5
4,108,906 - Psest_3936 0.21 -1.7
4,108,906 - Psest_3936 0.21 +0.4
4,108,906 - Psest_3936 0.21 -0.1
4,108,919 - Psest_3936 0.24 +1.5
4,108,919 - Psest_3936 0.24 +0.4
4,109,303 - +1.1
4,109,303 - -0.4
4,109,362 + +0.1
4,109,363 - +0.5

Or see this region's nucleotide sequence