Experiment: sodium fluoride 8.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3183 and Psest_3184 overlap by 4 nucleotides Psest_3184 and Psest_3185 overlap by 4 nucleotides
Psest_3183: Psest_3183 - hypothetical protein, at 3,354,998 to 3,356,551
_3183
Psest_3184: Psest_3184 - hypothetical protein, at 3,356,548 to 3,357,720
_3184
Psest_3185: Psest_3185 - MoxR-like ATPases, at 3,357,717 to 3,358,730
_3185
Position (kb)
3356
3357
3358 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3355.600 kb on - strand, within Psest_3183 at 3355.600 kb on - strand, within Psest_3183 at 3355.613 kb on + strand, within Psest_3183 at 3355.613 kb on + strand, within Psest_3183 at 3355.613 kb on + strand, within Psest_3183 at 3355.613 kb on + strand, within Psest_3183 at 3355.613 kb on + strand, within Psest_3183 at 3355.646 kb on + strand, within Psest_3183 at 3355.646 kb on + strand, within Psest_3183 at 3355.647 kb on - strand, within Psest_3183 at 3356.167 kb on - strand, within Psest_3183 at 3356.167 kb on - strand, within Psest_3183 at 3356.248 kb on + strand, within Psest_3183 at 3356.309 kb on + strand, within Psest_3183 at 3356.466 kb on - strand at 3356.639 kb on - strand at 3356.706 kb on - strand, within Psest_3184 at 3357.034 kb on + strand, within Psest_3184 at 3357.035 kb on - strand, within Psest_3184 at 3357.227 kb on - strand, within Psest_3184 at 3357.250 kb on + strand, within Psest_3184 at 3357.250 kb on + strand, within Psest_3184 at 3357.251 kb on - strand, within Psest_3184 at 3357.326 kb on - strand, within Psest_3184 at 3357.362 kb on + strand, within Psest_3184 at 3357.362 kb on + strand, within Psest_3184 at 3357.363 kb on - strand, within Psest_3184 at 3357.363 kb on - strand, within Psest_3184 at 3357.363 kb on - strand, within Psest_3184 at 3357.363 kb on - strand, within Psest_3184 at 3357.449 kb on + strand, within Psest_3184 at 3357.450 kb on - strand, within Psest_3184 at 3357.716 kb on + strand at 3357.716 kb on + strand at 3357.717 kb on - strand at 3357.832 kb on + strand, within Psest_3185 at 3358.027 kb on - strand, within Psest_3185 at 3358.142 kb on - strand, within Psest_3185 at 3358.461 kb on + strand, within Psest_3185
Per-strain Table
Position Strand Gene LocusTag Fraction sodium fluoride 8.5 mM remove 3,355,600 - Psest_3183 0.39 +0.4 3,355,600 - Psest_3183 0.39 -1.5 3,355,613 + Psest_3183 0.40 +1.0 3,355,613 + Psest_3183 0.40 -1.3 3,355,613 + Psest_3183 0.40 -1.0 3,355,613 + Psest_3183 0.40 -3.1 3,355,613 + Psest_3183 0.40 +0.0 3,355,646 + Psest_3183 0.42 +0.2 3,355,646 + Psest_3183 0.42 -1.8 3,355,647 - Psest_3183 0.42 -0.0 3,356,167 - Psest_3183 0.75 -0.0 3,356,167 - Psest_3183 0.75 -0.6 3,356,248 + Psest_3183 0.80 +0.2 3,356,309 + Psest_3183 0.84 +1.0 3,356,466 - -0.1 3,356,639 - +0.0 3,356,706 - Psest_3184 0.13 -3.1 3,357,034 + Psest_3184 0.41 -0.9 3,357,035 - Psest_3184 0.42 +2.1 3,357,227 - Psest_3184 0.58 -1.8 3,357,250 + Psest_3184 0.60 -1.2 3,357,250 + Psest_3184 0.60 -1.5 3,357,251 - Psest_3184 0.60 -0.8 3,357,326 - Psest_3184 0.66 -0.5 3,357,362 + Psest_3184 0.69 -0.3 3,357,362 + Psest_3184 0.69 -0.8 3,357,363 - Psest_3184 0.69 -0.8 3,357,363 - Psest_3184 0.69 +0.2 3,357,363 - Psest_3184 0.69 -0.8 3,357,363 - Psest_3184 0.69 +0.6 3,357,449 + Psest_3184 0.77 -0.4 3,357,450 - Psest_3184 0.77 -0.4 3,357,716 + +1.9 3,357,716 + -1.2 3,357,717 - -1.8 3,357,832 + Psest_3185 0.11 +1.2 3,358,027 - Psest_3185 0.31 -0.8 3,358,142 - Psest_3185 0.42 +0.0 3,358,461 + Psest_3185 0.73 -1.3
Or see this region's nucleotide sequence