Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS25705

Experiment: 4-Hydroxyphenylpropionic (C) 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-Hydroxyphenylpropionic (C) 5 mM
5,737,687	+		PFLU_RS25695	0.47	+0.1
5,737,687	+		PFLU_RS25695	0.47	-1.7
5,737,785	+		PFLU_RS25695	0.58	-0.7
5,737,785	+		PFLU_RS25695	0.58	+0.2
5,737,785	+		PFLU_RS25695	0.58	+0.3
5,737,786	-		PFLU_RS25695	0.58	-0.1
5,737,786	-		PFLU_RS25695	0.58	-0.2
5,737,786	-		PFLU_RS25695	0.58	+0.3
5,737,786	-		PFLU_RS25695	0.58	-0.8
5,737,946	+		PFLU_RS25695	0.76	+0.0
5,737,947	-		PFLU_RS25695	0.76	+0.4
5,737,995	+		PFLU_RS25695	0.82	-0.2
5,737,995	+		PFLU_RS25695	0.82	-0.9
5,738,134	-				-1.9
5,738,134	-				+0.5
5,738,134	-				+0.8
5,738,142	+				-0.5
5,738,142	+				+0.4
5,738,143	-				+0.5
5,738,155	-				+1.8
5,738,155	-				+1.3
5,738,155	-				-0.9
5,738,155	-				+0.7
5,738,155	-				+0.7
5,738,209	+				-1.0
5,738,209	+				+1.2
5,738,247	+				+0.3
5,738,270	+				+1.0
5,738,300	+				-2.7
5,738,300	+				-0.2
5,738,300	+				-1.3
5,738,300	+				-0.3
5,738,300	+				+0.4
5,738,300	+				+0.1
5,738,301	-				+0.6
5,738,301	-				-0.2
5,738,301	-				-1.7
5,738,301	-				+0.2
5,738,301	-				-0.8
5,738,301	-				-1.7
5,738,301	-				+1.5
5,738,301	-				+1.7
5,738,301	-				-0.5
5,738,301	-				-0.1
5,738,346	+		PFLU_RS25700	0.11	+1.0
5,738,346	+		PFLU_RS25700	0.11	-0.8
5,738,347	-		PFLU_RS25700	0.11	+0.9
5,738,347	-		PFLU_RS25700	0.11	+0.1
5,738,408	+		PFLU_RS25700	0.31	+0.1
5,738,408	+		PFLU_RS25700	0.31	-0.7
5,738,408	+		PFLU_RS25700	0.31	-0.7
5,738,408	+		PFLU_RS25700	0.31	-0.3
5,738,408	+		PFLU_RS25700	0.31	+0.2
5,738,408	+		PFLU_RS25700	0.31	+0.7
5,738,409	-		PFLU_RS25700	0.31	+1.3
5,738,409	-		PFLU_RS25700	0.31	-1.7
5,738,409	-		PFLU_RS25700	0.31	-1.3
5,738,409	-		PFLU_RS25700	0.31	+0.8
5,738,409	-		PFLU_RS25700	0.31	+0.2
5,738,409	-		PFLU_RS25700	0.31	+0.7
5,738,409	-		PFLU_RS25700	0.31	-0.7
5,738,409	-		PFLU_RS25700	0.31	-0.3
5,738,413	+		PFLU_RS25700	0.32	-0.6
5,738,413	+		PFLU_RS25700	0.32	-0.3
5,738,413	+		PFLU_RS25700	0.32	+1.0
5,738,413	+		PFLU_RS25700	0.32	+0.4
5,738,413	+		PFLU_RS25700	0.32	+0.7
5,738,413	+		PFLU_RS25700	0.32	+0.1
5,738,413	+		PFLU_RS25700	0.32	+0.6
5,738,413	+		PFLU_RS25700	0.32	+0.5
5,738,413	+		PFLU_RS25700	0.32	-2.0
5,738,413	+		PFLU_RS25700	0.32	+0.1
5,738,413	+		PFLU_RS25700	0.32	-0.4
5,738,413	+		PFLU_RS25700	0.32	-1.4
5,738,413	+		PFLU_RS25700	0.32	-1.3
5,738,413	+		PFLU_RS25700	0.32	-1.5
5,738,413	+		PFLU_RS25700	0.32	-1.5
5,738,413	+		PFLU_RS25700	0.32	+1.8
5,738,413	+		PFLU_RS25700	0.32	-0.3
5,738,413	+		PFLU_RS25700	0.32	-1.5
5,738,414	-		PFLU_RS25700	0.32	+0.3
5,738,414	-		PFLU_RS25700	0.32	-1.7
5,738,414	-		PFLU_RS25700	0.32	-0.9
5,738,414	-		PFLU_RS25700	0.32	-0.1
5,738,414	-		PFLU_RS25700	0.32	+0.8
5,738,414	-		PFLU_RS25700	0.32	-0.1
5,738,414	-		PFLU_RS25700	0.32	+0.9
5,738,414	-		PFLU_RS25700	0.32	-1.3
5,738,414	-		PFLU_RS25700	0.32	-2.0
5,738,419	+		PFLU_RS25700	0.34	-0.6
5,738,419	+		PFLU_RS25700	0.34	-0.5
5,738,419	+		PFLU_RS25700	0.34	-1.0
5,738,419	+		PFLU_RS25700	0.34	-0.8
5,738,419	+		PFLU_RS25700	0.34	-2.2
5,738,419	+		PFLU_RS25700	0.34	+0.8
5,738,419	+		PFLU_RS25700	0.34	+0.4
5,738,419	+		PFLU_RS25700	0.34	+0.7
5,738,419	+		PFLU_RS25700	0.34	-1.8
5,738,419	+		PFLU_RS25700	0.34	-2.5
5,738,419	+		PFLU_RS25700	0.34	+1.2
5,738,419	+		PFLU_RS25700	0.34	-0.9
5,738,419	+		PFLU_RS25700	0.34	+0.3
5,738,419	+		PFLU_RS25700	0.34	-1.0
5,738,419	+		PFLU_RS25700	0.34	-0.8
5,738,419	+		PFLU_RS25700	0.34	-2.3
5,738,419	+		PFLU_RS25700	0.34	-1.3
5,738,419	+		PFLU_RS25700	0.34	+0.7
5,738,419	+		PFLU_RS25700	0.34	-0.3
5,738,419	+		PFLU_RS25700	0.34	+0.4
5,738,419	+		PFLU_RS25700	0.34	+0.4
5,738,419	+		PFLU_RS25700	0.34	-0.5
5,738,419	+		PFLU_RS25700	0.34	+0.8
5,738,419	+		PFLU_RS25700	0.34	+0.7
5,738,419	+		PFLU_RS25700	0.34	-0.1
5,738,420	-		PFLU_RS25700	0.34	+0.2
5,738,420	-		PFLU_RS25700	0.34	-1.2
5,738,420	-		PFLU_RS25700	0.34	+0.6
5,738,420	-		PFLU_RS25700	0.34	-0.4
5,738,420	-		PFLU_RS25700	0.34	-0.5
5,738,420	-		PFLU_RS25700	0.34	+0.5
5,738,420	-		PFLU_RS25700	0.34	-1.2
5,738,420	-		PFLU_RS25700	0.34	-1.1
5,738,420	-		PFLU_RS25700	0.34	-0.4
5,738,420	-		PFLU_RS25700	0.34	-1.0
5,738,420	-		PFLU_RS25700	0.34	+1.1
5,738,420	-		PFLU_RS25700	0.34	+0.3
5,738,420	-		PFLU_RS25700	0.34	+0.3
5,738,420	-		PFLU_RS25700	0.34	-3.2
5,738,420	-		PFLU_RS25700	0.34	-0.8
5,738,420	-		PFLU_RS25700	0.34	+0.7
5,738,420	-		PFLU_RS25700	0.34	-1.3
5,738,420	-		PFLU_RS25700	0.34	-2.1
5,738,420	-		PFLU_RS25700	0.34	-1.3
5,738,420	-		PFLU_RS25700	0.34	+0.1
5,738,420	-		PFLU_RS25700	0.34	+0.4
5,738,420	-		PFLU_RS25700	0.34	+0.4
5,738,577	+		PFLU_RS25700	0.84	+2.7
5,738,626	+				+0.3
5,738,626	+				+0.7
5,738,626	+				-0.2
5,738,627	-				+1.3
5,738,627	-				+1.2
5,738,689	+				-0.0
5,738,689	+				+0.3
5,738,741	-		PFLU_RS25705	0.16	-0.2
5,738,800	+		PFLU_RS25705	0.25	-0.2
5,738,800	+		PFLU_RS25705	0.25	+0.9
5,738,800	+		PFLU_RS25705	0.25	+0.7
5,738,800	+		PFLU_RS25705	0.25	-1.0
5,738,800	+		PFLU_RS25705	0.25	-0.7
5,738,800	+		PFLU_RS25705	0.25	+1.1
5,738,800	+		PFLU_RS25705	0.25	-1.0
5,738,800	+		PFLU_RS25705	0.25	-2.0
5,738,800	+		PFLU_RS25705	0.25	+0.6
5,738,800	+		PFLU_RS25705	0.25	+0.2
5,738,800	+		PFLU_RS25705	0.25	-1.6
5,738,801	-		PFLU_RS25705	0.25	+0.8
5,738,801	-		PFLU_RS25705	0.25	-0.6
5,738,801	-		PFLU_RS25705	0.25	-0.4
5,738,801	-		PFLU_RS25705	0.25	+1.1
5,738,801	-		PFLU_RS25705	0.25	-1.4
5,738,801	-		PFLU_RS25705	0.25	+0.2
5,738,801	-		PFLU_RS25705	0.25	+0.5
5,738,941	+		PFLU_RS25705	0.44	+0.4
5,738,942	-		PFLU_RS25705	0.45	+2.7
5,738,942	-		PFLU_RS25705	0.45	+0.8
5,738,942	-		PFLU_RS25705	0.45	+0.2
5,738,960	-		PFLU_RS25705	0.47	-1.1
5,738,999	-		PFLU_RS25705	0.53	+0.0
5,739,023	+		PFLU_RS25705	0.56	+1.1
5,739,140	+		PFLU_RS25705	0.72	+0.7
5,739,140	+		PFLU_RS25705	0.72	-0.2
5,739,140	+		PFLU_RS25705	0.72	-2.0
5,739,289	+				-0.2
5,739,290	-				+0.4
5,739,290	-				+0.9
5,739,290	-				-0.3
5,739,326	+				-0.9
5,739,326	+				+0.1
5,739,327	-				+0.4
5,739,327	-				+0.3
5,739,409	-				-0.3
5,739,463	+		PFLU_RS25710	0.11	-3.0
5,739,540	+		PFLU_RS25710	0.17	+0.8
5,739,541	-		PFLU_RS25710	0.18	-0.8
5,739,541	-		PFLU_RS25710	0.18	-0.3
5,739,546	+		PFLU_RS25710	0.18	-0.2
5,739,547	-		PFLU_RS25710	0.18	-1.8
5,739,547	-		PFLU_RS25710	0.18	+0.1
5,739,547	-		PFLU_RS25710	0.18	-0.8
5,739,547	-		PFLU_RS25710	0.18	+0.1
5,739,547	-		PFLU_RS25710	0.18	-0.0
5,739,717	+		PFLU_RS25710	0.33	-2.4
5,739,717	+		PFLU_RS25710	0.33	+0.8
5,739,717	+		PFLU_RS25710	0.33	-0.2
5,739,717	+		PFLU_RS25710	0.33	-0.9
5,739,717	+		PFLU_RS25710	0.33	+1.2
5,739,717	+		PFLU_RS25710	0.33	-0.7
5,739,718	-		PFLU_RS25710	0.33	+1.1
5,739,718	-		PFLU_RS25710	0.33	-1.3
5,739,718	-		PFLU_RS25710	0.33	-0.3
5,739,718	-		PFLU_RS25710	0.33	+1.2
5,739,718	-		PFLU_RS25710	0.33	+0.1
5,739,718	-		PFLU_RS25710	0.33	-0.9
5,739,718	-		PFLU_RS25710	0.33	-0.1
5,739,804	+		PFLU_RS25710	0.40	-0.7
5,739,804	+		PFLU_RS25710	0.40	-0.5
5,739,817	+		PFLU_RS25710	0.41	-0.3
5,739,873	+		PFLU_RS25710	0.46	+1.7
5,739,873	+		PFLU_RS25710	0.46	-0.3
5,739,873	+		PFLU_RS25710	0.46	-0.0
5,739,873	+		PFLU_RS25710	0.46	-0.3
5,739,874	-		PFLU_RS25710	0.46	-0.8
5,739,874	-		PFLU_RS25710	0.46	-1.3
5,739,874	-		PFLU_RS25710	0.46	+1.4
5,739,874	-		PFLU_RS25710	0.46	+0.4
5,739,874	-		PFLU_RS25710	0.46	+0.5
5,739,874	-		PFLU_RS25710	0.46	-0.7
5,739,874	-		PFLU_RS25710	0.46	+3.2
5,739,888	+		PFLU_RS25710	0.47	+0.6
5,739,888	+		PFLU_RS25710	0.47	-0.0
5,739,888	+		PFLU_RS25710	0.47	-0.9
5,739,888	+		PFLU_RS25710	0.47	-2.0
5,739,888	+		PFLU_RS25710	0.47	+1.7
5,739,888	+		PFLU_RS25710	0.47	+0.3
5,739,889	-		PFLU_RS25710	0.47	-0.5
5,739,889	-		PFLU_RS25710	0.47	+0.3
5,739,889	-		PFLU_RS25710	0.47	-2.0
5,740,132	-		PFLU_RS25710	0.68	+0.5
5,740,263	+		PFLU_RS25710	0.79	+0.1
5,740,263	+		PFLU_RS25710	0.79	-1.3
5,740,263	+		PFLU_RS25710	0.79	-0.5
5,740,263	+		PFLU_RS25710	0.79	-0.5
5,740,263	+		PFLU_RS25710	0.79	+1.0
5,740,263	+		PFLU_RS25710	0.79	-0.0
5,740,263	+		PFLU_RS25710	0.79	-0.1
5,740,263	+		PFLU_RS25710	0.79	-0.3
5,740,263	+		PFLU_RS25710	0.79	-1.5
5,740,263	+		PFLU_RS25710	0.79	-1.2
5,740,263	+		PFLU_RS25710	0.79	-1.9
5,740,263	+		PFLU_RS25710	0.79	+1.1
5,740,263	+		PFLU_RS25710	0.79	-0.1
5,740,263	+		PFLU_RS25710	0.79	+1.1
5,740,264	-		PFLU_RS25710	0.79	-0.3
5,740,264	-		PFLU_RS25710	0.79	+1.4
5,740,264	-		PFLU_RS25710	0.79	-1.6
5,740,264	-		PFLU_RS25710	0.79	+0.1
5,740,264	-		PFLU_RS25710	0.79	+0.2
5,740,264	-		PFLU_RS25710	0.79	+0.7
5,740,264	-		PFLU_RS25710	0.79	+0.9
5,740,264	-		PFLU_RS25710	0.79	+0.7
5,740,264	-		PFLU_RS25710	0.79	+0.3
5,740,264	-		PFLU_RS25710	0.79	+1.7
5,740,314	+		PFLU_RS25710	0.83	+0.1
5,740,315	-		PFLU_RS25710	0.84	-0.1
5,740,315	-		PFLU_RS25710	0.84	-0.7