Experiment: 4-Hydroxyphenylpropionic (C) 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS24010 and PFLU_RS24015 are separated by 393 nucleotides PFLU_RS24015 and PFLU_RS24020 are separated by 96 nucleotides PFLU_RS24020 and PFLU_RS24025 are separated by 137 nucleotides
PFLU_RS24010: PFLU_RS24010 - glycine cleavage system aminomethyltransferase GcvT, at 5,379,933 to 5,381,057
_RS24010
PFLU_RS24015: PFLU_RS24015 - cold-shock protein, at 5,381,451 to 5,381,663
_RS24015
PFLU_RS24020: PFLU_RS24020 - RDD family protein, at 5,381,760 to 5,382,248
_RS24020
PFLU_RS24025: PFLU_RS24025 - quinolinate synthase NadA, at 5,382,386 to 5,383,444
_RS24025
Position (kb) 5381
5382
5383 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5380.800 kb on - strand, within PFLU_RS24010 at 5380.807 kb on + strand, within PFLU_RS24010 at 5380.808 kb on - strand, within PFLU_RS24010 at 5380.888 kb on + strand, within PFLU_RS24010 at 5380.888 kb on + strand, within PFLU_RS24010 at 5380.888 kb on + strand, within PFLU_RS24010 at 5380.888 kb on + strand, within PFLU_RS24010 at 5380.888 kb on + strand, within PFLU_RS24010 at 5380.888 kb on + strand, within PFLU_RS24010 at 5380.888 kb on + strand, within PFLU_RS24010 at 5380.889 kb on - strand, within PFLU_RS24010 at 5380.889 kb on - strand, within PFLU_RS24010 at 5380.889 kb on - strand, within PFLU_RS24010 at 5381.014 kb on + strand at 5381.014 kb on + strand at 5381.018 kb on + strand at 5381.018 kb on + strand at 5381.019 kb on - strand at 5381.019 kb on - strand at 5381.033 kb on - strand at 5381.043 kb on + strand at 5381.043 kb on + strand at 5381.044 kb on - strand at 5381.044 kb on - strand at 5381.076 kb on - strand at 5381.076 kb on - strand at 5381.076 kb on - strand at 5381.076 kb on - strand at 5381.120 kb on + strand at 5381.120 kb on + strand at 5381.152 kb on - strand at 5381.163 kb on + strand at 5381.164 kb on - strand at 5381.211 kb on + strand at 5381.211 kb on + strand at 5381.211 kb on + strand at 5381.211 kb on + strand at 5381.211 kb on + strand at 5381.212 kb on - strand at 5381.212 kb on - strand at 5381.212 kb on - strand at 5381.212 kb on - strand at 5381.212 kb on - strand at 5381.212 kb on - strand at 5381.224 kb on - strand at 5381.224 kb on - strand at 5381.272 kb on - strand at 5381.272 kb on - strand at 5381.333 kb on + strand at 5381.334 kb on - strand at 5381.342 kb on + strand at 5381.342 kb on + strand at 5381.342 kb on + strand at 5381.343 kb on - strand at 5381.343 kb on - strand at 5381.343 kb on - strand at 5381.343 kb on - strand at 5381.351 kb on + strand at 5381.352 kb on - strand at 5381.352 kb on - strand at 5381.352 kb on - strand at 5381.352 kb on - strand at 5381.372 kb on + strand at 5381.372 kb on + strand at 5381.372 kb on + strand at 5381.373 kb on - strand at 5381.424 kb on - strand at 5381.510 kb on + strand, within PFLU_RS24015 at 5381.510 kb on + strand, within PFLU_RS24015 at 5381.510 kb on + strand, within PFLU_RS24015 at 5381.511 kb on - strand, within PFLU_RS24015 at 5381.555 kb on + strand, within PFLU_RS24015 at 5381.647 kb on + strand at 5381.647 kb on + strand at 5381.647 kb on + strand at 5381.648 kb on - strand at 5381.648 kb on - strand at 5381.648 kb on - strand at 5381.648 kb on - strand at 5381.728 kb on + strand at 5381.745 kb on + strand at 5381.835 kb on + strand, within PFLU_RS24020 at 5381.835 kb on + strand, within PFLU_RS24020 at 5381.835 kb on + strand, within PFLU_RS24020 at 5381.835 kb on + strand, within PFLU_RS24020 at 5381.836 kb on - strand, within PFLU_RS24020 at 5381.836 kb on - strand, within PFLU_RS24020 at 5381.836 kb on - strand, within PFLU_RS24020 at 5381.836 kb on - strand, within PFLU_RS24020 at 5381.836 kb on - strand, within PFLU_RS24020 at 5381.836 kb on - strand, within PFLU_RS24020 at 5381.836 kb on - strand, within PFLU_RS24020 at 5381.879 kb on + strand, within PFLU_RS24020 at 5381.880 kb on - strand, within PFLU_RS24020 at 5381.883 kb on + strand, within PFLU_RS24020 at 5381.883 kb on + strand, within PFLU_RS24020 at 5381.883 kb on + strand, within PFLU_RS24020 at 5381.884 kb on - strand, within PFLU_RS24020 at 5381.884 kb on - strand, within PFLU_RS24020 at 5381.884 kb on - strand, within PFLU_RS24020 at 5382.140 kb on - strand, within PFLU_RS24020 at 5382.159 kb on - strand, within PFLU_RS24020 at 5382.204 kb on + strand at 5382.204 kb on + strand at 5382.204 kb on + strand at 5382.204 kb on + strand at 5382.204 kb on + strand at 5382.204 kb on + strand at 5382.205 kb on - strand at 5382.220 kb on + strand at 5382.220 kb on + strand at 5382.220 kb on + strand at 5382.221 kb on - strand at 5382.221 kb on - strand at 5382.246 kb on + strand at 5382.246 kb on + strand at 5382.247 kb on - strand at 5382.247 kb on - strand at 5382.305 kb on - strand at 5382.407 kb on - strand at 5382.407 kb on - strand at 5382.565 kb on + strand, within PFLU_RS24025 at 5382.565 kb on + strand, within PFLU_RS24025 at 5382.565 kb on + strand, within PFLU_RS24025 at 5382.565 kb on + strand, within PFLU_RS24025 at 5382.566 kb on - strand, within PFLU_RS24025 at 5382.566 kb on - strand, within PFLU_RS24025 at 5382.639 kb on + strand, within PFLU_RS24025 at 5382.640 kb on - strand, within PFLU_RS24025 at 5382.668 kb on - strand, within PFLU_RS24025 at 5382.866 kb on - strand, within PFLU_RS24025 at 5382.891 kb on + strand, within PFLU_RS24025 at 5382.891 kb on + strand, within PFLU_RS24025 at 5382.891 kb on + strand, within PFLU_RS24025 at 5382.891 kb on + strand, within PFLU_RS24025 at 5382.891 kb on + strand, within PFLU_RS24025 at 5382.891 kb on + strand, within PFLU_RS24025 at 5382.891 kb on + strand, within PFLU_RS24025 at 5382.891 kb on + strand, within PFLU_RS24025 at 5382.891 kb on + strand, within PFLU_RS24025 at 5382.891 kb on + strand, within PFLU_RS24025 at 5382.892 kb on - strand, within PFLU_RS24025 at 5382.892 kb on - strand, within PFLU_RS24025 at 5382.892 kb on - strand, within PFLU_RS24025 at 5382.892 kb on - strand, within PFLU_RS24025 at 5382.892 kb on - strand, within PFLU_RS24025 at 5382.892 kb on - strand, within PFLU_RS24025 at 5382.892 kb on - strand, within PFLU_RS24025 at 5382.892 kb on - strand, within PFLU_RS24025 at 5382.892 kb on - strand, within PFLU_RS24025 at 5382.892 kb on - strand, within PFLU_RS24025 at 5382.892 kb on - strand, within PFLU_RS24025 at 5382.892 kb on - strand, within PFLU_RS24025 at 5382.892 kb on - strand, within PFLU_RS24025 at 5382.892 kb on - strand, within PFLU_RS24025 at 5382.892 kb on - strand, within PFLU_RS24025 at 5382.892 kb on - strand, within PFLU_RS24025 at 5382.892 kb on - strand, within PFLU_RS24025 at 5382.892 kb on - strand, within PFLU_RS24025 at 5383.026 kb on + strand, within PFLU_RS24025 at 5383.026 kb on + strand, within PFLU_RS24025 at 5383.026 kb on + strand, within PFLU_RS24025 at 5383.026 kb on + strand, within PFLU_RS24025 at 5383.026 kb on + strand, within PFLU_RS24025 at 5383.026 kb on + strand, within PFLU_RS24025 at 5383.026 kb on + strand, within PFLU_RS24025 at 5383.026 kb on + strand, within PFLU_RS24025 at 5383.026 kb on + strand, within PFLU_RS24025 at 5383.026 kb on + strand, within PFLU_RS24025 at 5383.026 kb on + strand, within PFLU_RS24025 at 5383.026 kb on + strand, within PFLU_RS24025 at 5383.026 kb on + strand, within PFLU_RS24025 at 5383.026 kb on + strand, within PFLU_RS24025 at 5383.026 kb on + strand, within PFLU_RS24025 at 5383.026 kb on + strand, within PFLU_RS24025 at 5383.026 kb on + strand, within PFLU_RS24025 at 5383.027 kb on - strand, within PFLU_RS24025 at 5383.027 kb on - strand, within PFLU_RS24025 at 5383.027 kb on - strand, within PFLU_RS24025 at 5383.027 kb on - strand, within PFLU_RS24025 at 5383.027 kb on - strand, within PFLU_RS24025 at 5383.027 kb on - strand, within PFLU_RS24025 at 5383.027 kb on - strand, within PFLU_RS24025 at 5383.027 kb on - strand, within PFLU_RS24025 at 5383.027 kb on - strand, within PFLU_RS24025 at 5383.027 kb on - strand, within PFLU_RS24025 at 5383.027 kb on - strand, within PFLU_RS24025 at 5383.027 kb on - strand, within PFLU_RS24025 at 5383.027 kb on - strand, within PFLU_RS24025
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxyphenylpropionic (C) 5 mM remove 5,380,800 - PFLU_RS24010 0.77 -1.7 5,380,807 + PFLU_RS24010 0.78 +0.5 5,380,808 - PFLU_RS24010 0.78 +0.4 5,380,888 + PFLU_RS24010 0.85 -0.0 5,380,888 + PFLU_RS24010 0.85 -0.5 5,380,888 + PFLU_RS24010 0.85 +0.4 5,380,888 + PFLU_RS24010 0.85 -2.7 5,380,888 + PFLU_RS24010 0.85 -0.6 5,380,888 + PFLU_RS24010 0.85 +0.7 5,380,888 + PFLU_RS24010 0.85 +0.8 5,380,889 - PFLU_RS24010 0.85 -0.6 5,380,889 - PFLU_RS24010 0.85 -0.9 5,380,889 - PFLU_RS24010 0.85 -0.8 5,381,014 + -1.0 5,381,014 + +1.6 5,381,018 + +0.1 5,381,018 + +0.4 5,381,019 - -0.6 5,381,019 - +0.7 5,381,033 - +0.0 5,381,043 + -1.0 5,381,043 + +0.3 5,381,044 - +0.6 5,381,044 - +1.2 5,381,076 - -0.9 5,381,076 - +1.0 5,381,076 - -0.7 5,381,076 - -0.0 5,381,120 + +1.8 5,381,120 + +1.1 5,381,152 - -0.4 5,381,163 + -0.1 5,381,164 - -0.1 5,381,211 + +0.5 5,381,211 + -0.5 5,381,211 + +0.3 5,381,211 + +1.2 5,381,211 + +1.6 5,381,212 - +0.3 5,381,212 - -0.3 5,381,212 - +0.8 5,381,212 - -0.1 5,381,212 - +0.5 5,381,212 - -0.6 5,381,224 - +0.0 5,381,224 - -1.3 5,381,272 - -0.2 5,381,272 - -0.3 5,381,333 + -1.4 5,381,334 - +1.0 5,381,342 + -1.1 5,381,342 + +1.6 5,381,342 + -0.9 5,381,343 - +0.1 5,381,343 - +0.4 5,381,343 - -0.4 5,381,343 - -1.5 5,381,351 + -0.2 5,381,352 - -1.3 5,381,352 - +1.6 5,381,352 - +0.6 5,381,352 - +1.6 5,381,372 + +0.0 5,381,372 + +3.6 5,381,372 + -0.9 5,381,373 - -1.4 5,381,424 - -2.7 5,381,510 + PFLU_RS24015 0.28 -0.9 5,381,510 + PFLU_RS24015 0.28 +0.7 5,381,510 + PFLU_RS24015 0.28 +2.6 5,381,511 - PFLU_RS24015 0.28 -1.6 5,381,555 + PFLU_RS24015 0.49 -0.3 5,381,647 + -1.0 5,381,647 + +0.8 5,381,647 + -2.4 5,381,648 - +0.3 5,381,648 - -0.9 5,381,648 - +0.3 5,381,648 - +0.2 5,381,728 + +0.4 5,381,745 + +0.7 5,381,835 + PFLU_RS24020 0.15 -0.1 5,381,835 + PFLU_RS24020 0.15 +0.8 5,381,835 + PFLU_RS24020 0.15 +1.1 5,381,835 + PFLU_RS24020 0.15 +1.6 5,381,836 - PFLU_RS24020 0.16 +0.4 5,381,836 - PFLU_RS24020 0.16 -0.9 5,381,836 - PFLU_RS24020 0.16 +0.9 5,381,836 - PFLU_RS24020 0.16 +0.3 5,381,836 - PFLU_RS24020 0.16 -0.1 5,381,836 - PFLU_RS24020 0.16 +1.6 5,381,836 - PFLU_RS24020 0.16 -1.8 5,381,879 + PFLU_RS24020 0.24 -1.0 5,381,880 - PFLU_RS24020 0.25 -0.3 5,381,883 + PFLU_RS24020 0.25 -0.8 5,381,883 + PFLU_RS24020 0.25 -0.4 5,381,883 + PFLU_RS24020 0.25 -1.9 5,381,884 - PFLU_RS24020 0.25 +0.9 5,381,884 - PFLU_RS24020 0.25 +1.2 5,381,884 - PFLU_RS24020 0.25 -2.0 5,382,140 - PFLU_RS24020 0.78 -0.7 5,382,159 - PFLU_RS24020 0.82 -2.1 5,382,204 + -0.7 5,382,204 + +0.9 5,382,204 + +0.0 5,382,204 + -0.4 5,382,204 + +0.8 5,382,204 + +0.6 5,382,205 - +0.1 5,382,220 + +0.3 5,382,220 + +0.0 5,382,220 + -0.9 5,382,221 - -1.1 5,382,221 - +1.3 5,382,246 + +1.6 5,382,246 + +1.6 5,382,247 - -0.4 5,382,247 - +1.1 5,382,305 - -0.5 5,382,407 - +0.9 5,382,407 - -2.0 5,382,565 + PFLU_RS24025 0.17 -1.1 5,382,565 + PFLU_RS24025 0.17 -0.7 5,382,565 + PFLU_RS24025 0.17 +0.3 5,382,565 + PFLU_RS24025 0.17 -0.4 5,382,566 - PFLU_RS24025 0.17 -1.1 5,382,566 - PFLU_RS24025 0.17 +0.3 5,382,639 + PFLU_RS24025 0.24 -0.4 5,382,640 - PFLU_RS24025 0.24 +1.0 5,382,668 - PFLU_RS24025 0.27 -0.5 5,382,866 - PFLU_RS24025 0.45 +0.0 5,382,891 + PFLU_RS24025 0.48 -1.2 5,382,891 + PFLU_RS24025 0.48 -1.6 5,382,891 + PFLU_RS24025 0.48 -0.3 5,382,891 + PFLU_RS24025 0.48 -2.2 5,382,891 + PFLU_RS24025 0.48 -1.4 5,382,891 + PFLU_RS24025 0.48 +0.9 5,382,891 + PFLU_RS24025 0.48 -2.3 5,382,891 + PFLU_RS24025 0.48 -1.0 5,382,891 + PFLU_RS24025 0.48 -3.0 5,382,891 + PFLU_RS24025 0.48 -0.1 5,382,892 - PFLU_RS24025 0.48 -0.6 5,382,892 - PFLU_RS24025 0.48 -0.9 5,382,892 - PFLU_RS24025 0.48 -0.2 5,382,892 - PFLU_RS24025 0.48 +0.3 5,382,892 - PFLU_RS24025 0.48 +0.4 5,382,892 - PFLU_RS24025 0.48 +0.2 5,382,892 - PFLU_RS24025 0.48 +1.2 5,382,892 - PFLU_RS24025 0.48 -0.7 5,382,892 - PFLU_RS24025 0.48 +1.6 5,382,892 - PFLU_RS24025 0.48 +1.4 5,382,892 - PFLU_RS24025 0.48 -0.6 5,382,892 - PFLU_RS24025 0.48 +0.8 5,382,892 - PFLU_RS24025 0.48 -0.1 5,382,892 - PFLU_RS24025 0.48 +0.0 5,382,892 - PFLU_RS24025 0.48 -0.7 5,382,892 - PFLU_RS24025 0.48 -1.3 5,382,892 - PFLU_RS24025 0.48 -0.5 5,382,892 - PFLU_RS24025 0.48 +1.6 5,383,026 + PFLU_RS24025 0.60 -0.7 5,383,026 + PFLU_RS24025 0.60 -1.7 5,383,026 + PFLU_RS24025 0.60 +0.9 5,383,026 + PFLU_RS24025 0.60 -1.9 5,383,026 + PFLU_RS24025 0.60 +0.2 5,383,026 + PFLU_RS24025 0.60 -0.5 5,383,026 + PFLU_RS24025 0.60 -1.5 5,383,026 + PFLU_RS24025 0.60 -0.1 5,383,026 + PFLU_RS24025 0.60 -1.3 5,383,026 + PFLU_RS24025 0.60 -1.1 5,383,026 + PFLU_RS24025 0.60 -1.0 5,383,026 + PFLU_RS24025 0.60 +0.6 5,383,026 + PFLU_RS24025 0.60 -2.3 5,383,026 + PFLU_RS24025 0.60 -0.7 5,383,026 + PFLU_RS24025 0.60 +0.0 5,383,026 + PFLU_RS24025 0.60 -0.3 5,383,026 + PFLU_RS24025 0.60 -1.4 5,383,027 - PFLU_RS24025 0.61 -0.3 5,383,027 - PFLU_RS24025 0.61 -1.4 5,383,027 - PFLU_RS24025 0.61 +1.0 5,383,027 - PFLU_RS24025 0.61 -0.6 5,383,027 - PFLU_RS24025 0.61 -3.0 5,383,027 - PFLU_RS24025 0.61 -0.1 5,383,027 - PFLU_RS24025 0.61 -1.2 5,383,027 - PFLU_RS24025 0.61 -0.4 5,383,027 - PFLU_RS24025 0.61 +1.6 5,383,027 - PFLU_RS24025 0.61 -0.5 5,383,027 - PFLU_RS24025 0.61 -0.2 5,383,027 - PFLU_RS24025 0.61 +0.6 5,383,027 - PFLU_RS24025 0.61 -0.1
Or see this region's nucleotide sequence