Experiment: 4-Hydroxyphenylpropionic (C) 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS23990 and PFLU_RS23995 are separated by 444 nucleotides PFLU_RS23995 and PFLU_RS24000 are separated by 10 nucleotides
PFLU_RS23990: PFLU_RS23990 - sigma-54-dependent transcriptional regulator, at 5,373,165 to 5,374,676
_RS23990
PFLU_RS23995: PFLU_RS23995 - glycine cleavage system protein GcvH, at 5,375,121 to 5,375,504
_RS23995
PFLU_RS24000: PFLU_RS24000 - aminomethyl-transferring glycine dehydrogenase, at 5,375,515 to 5,378,355
_RS24000
Position (kb) 5375
5376 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5374.221 kb on + strand, within PFLU_RS23990 at 5374.221 kb on + strand, within PFLU_RS23990 at 5374.222 kb on - strand, within PFLU_RS23990 at 5374.222 kb on - strand, within PFLU_RS23990 at 5374.222 kb on - strand, within PFLU_RS23990 at 5374.238 kb on + strand, within PFLU_RS23990 at 5374.238 kb on + strand, within PFLU_RS23990 at 5374.238 kb on + strand, within PFLU_RS23990 at 5374.238 kb on + strand, within PFLU_RS23990 at 5374.238 kb on + strand, within PFLU_RS23990 at 5374.238 kb on + strand, within PFLU_RS23990 at 5374.296 kb on + strand, within PFLU_RS23990 at 5374.296 kb on + strand, within PFLU_RS23990 at 5374.296 kb on + strand, within PFLU_RS23990 at 5374.297 kb on - strand, within PFLU_RS23990 at 5374.297 kb on - strand, within PFLU_RS23990 at 5374.297 kb on - strand, within PFLU_RS23990 at 5374.356 kb on - strand, within PFLU_RS23990 at 5374.356 kb on - strand, within PFLU_RS23990 at 5374.360 kb on - strand, within PFLU_RS23990 at 5374.360 kb on - strand, within PFLU_RS23990 at 5374.360 kb on - strand, within PFLU_RS23990 at 5374.360 kb on - strand, within PFLU_RS23990 at 5374.569 kb on + strand at 5374.569 kb on + strand at 5374.570 kb on - strand at 5374.570 kb on - strand at 5374.578 kb on + strand at 5374.578 kb on + strand at 5374.578 kb on + strand at 5374.579 kb on - strand at 5374.650 kb on + strand at 5374.651 kb on - strand at 5374.651 kb on - strand at 5374.651 kb on - strand at 5374.690 kb on + strand at 5374.766 kb on - strand at 5374.766 kb on - strand at 5374.939 kb on + strand at 5374.939 kb on + strand at 5374.939 kb on + strand at 5374.939 kb on + strand at 5374.939 kb on + strand at 5374.940 kb on - strand at 5374.940 kb on - strand at 5374.940 kb on - strand at 5375.013 kb on + strand at 5375.061 kb on - strand at 5375.259 kb on + strand, within PFLU_RS23995 at 5375.316 kb on + strand, within PFLU_RS23995 at 5375.316 kb on + strand, within PFLU_RS23995 at 5375.316 kb on + strand, within PFLU_RS23995 at 5375.316 kb on + strand, within PFLU_RS23995 at 5375.316 kb on + strand, within PFLU_RS23995 at 5375.316 kb on + strand, within PFLU_RS23995 at 5375.316 kb on + strand, within PFLU_RS23995 at 5375.316 kb on + strand, within PFLU_RS23995 at 5375.316 kb on + strand, within PFLU_RS23995 at 5375.316 kb on + strand, within PFLU_RS23995 at 5375.316 kb on + strand, within PFLU_RS23995 at 5375.316 kb on + strand, within PFLU_RS23995 at 5375.316 kb on + strand, within PFLU_RS23995 at 5375.316 kb on + strand, within PFLU_RS23995 at 5375.316 kb on + strand, within PFLU_RS23995 at 5375.316 kb on + strand, within PFLU_RS23995 at 5375.317 kb on - strand, within PFLU_RS23995 at 5375.317 kb on - strand, within PFLU_RS23995 at 5375.317 kb on - strand, within PFLU_RS23995 at 5375.317 kb on - strand, within PFLU_RS23995 at 5375.317 kb on - strand, within PFLU_RS23995 at 5375.317 kb on - strand, within PFLU_RS23995 at 5375.317 kb on - strand, within PFLU_RS23995 at 5375.317 kb on - strand, within PFLU_RS23995 at 5375.317 kb on - strand, within PFLU_RS23995 at 5375.317 kb on - strand, within PFLU_RS23995 at 5375.317 kb on - strand, within PFLU_RS23995 at 5375.317 kb on - strand, within PFLU_RS23995 at 5375.317 kb on - strand, within PFLU_RS23995 at 5375.317 kb on - strand, within PFLU_RS23995 at 5375.317 kb on - strand, within PFLU_RS23995 at 5375.317 kb on - strand, within PFLU_RS23995 at 5375.317 kb on - strand, within PFLU_RS23995 at 5375.317 kb on - strand, within PFLU_RS23995 at 5375.317 kb on - strand, within PFLU_RS23995 at 5375.317 kb on - strand, within PFLU_RS23995 at 5375.317 kb on - strand, within PFLU_RS23995 at 5375.317 kb on - strand, within PFLU_RS23995 at 5375.317 kb on - strand, within PFLU_RS23995 at 5375.317 kb on - strand, within PFLU_RS23995 at 5375.317 kb on - strand, within PFLU_RS23995 at 5375.317 kb on - strand, within PFLU_RS23995 at 5375.317 kb on - strand, within PFLU_RS23995 at 5375.447 kb on + strand, within PFLU_RS23995 at 5375.469 kb on + strand at 5375.469 kb on + strand at 5375.470 kb on - strand at 5375.470 kb on - strand at 5375.523 kb on + strand at 5375.533 kb on - strand at 5375.755 kb on + strand at 5375.755 kb on + strand at 5375.755 kb on + strand at 5375.755 kb on + strand at 5375.755 kb on + strand at 5375.755 kb on + strand at 5375.756 kb on - strand at 5375.756 kb on - strand at 5375.756 kb on - strand at 5375.756 kb on - strand at 5375.756 kb on - strand at 5375.756 kb on - strand at 5375.756 kb on - strand at 5375.756 kb on - strand at 5375.756 kb on - strand at 5375.770 kb on + strand at 5375.770 kb on + strand at 5375.770 kb on + strand at 5375.770 kb on + strand at 5375.770 kb on + strand at 5375.771 kb on - strand at 5375.771 kb on - strand at 5375.771 kb on - strand at 5375.771 kb on - strand at 5375.773 kb on + strand at 5375.773 kb on + strand at 5375.773 kb on + strand at 5375.773 kb on + strand at 5375.773 kb on + strand at 5375.773 kb on + strand at 5375.773 kb on + strand at 5375.773 kb on + strand at 5375.773 kb on + strand at 5375.774 kb on - strand at 5375.774 kb on - strand at 5375.774 kb on - strand at 5375.774 kb on - strand at 5375.774 kb on - strand at 5375.774 kb on - strand at 5375.774 kb on - strand at 5375.774 kb on - strand at 5375.774 kb on - strand at 5375.774 kb on - strand at 5375.796 kb on + strand at 5375.830 kb on + strand, within PFLU_RS24000 at 5375.839 kb on + strand, within PFLU_RS24000 at 5375.839 kb on + strand, within PFLU_RS24000 at 5375.839 kb on + strand, within PFLU_RS24000 at 5375.839 kb on + strand, within PFLU_RS24000 at 5375.839 kb on + strand, within PFLU_RS24000 at 5375.840 kb on - strand, within PFLU_RS24000 at 5375.840 kb on - strand, within PFLU_RS24000 at 5375.849 kb on - strand, within PFLU_RS24000 at 5376.090 kb on + strand, within PFLU_RS24000 at 5376.160 kb on + strand, within PFLU_RS24000 at 5376.361 kb on + strand, within PFLU_RS24000 at 5376.361 kb on + strand, within PFLU_RS24000 at 5376.361 kb on + strand, within PFLU_RS24000 at 5376.361 kb on + strand, within PFLU_RS24000 at 5376.362 kb on - strand, within PFLU_RS24000 at 5376.362 kb on - strand, within PFLU_RS24000 at 5376.477 kb on + strand, within PFLU_RS24000 at 5376.477 kb on + strand, within PFLU_RS24000 at 5376.477 kb on + strand, within PFLU_RS24000 at 5376.477 kb on + strand, within PFLU_RS24000 at 5376.477 kb on + strand, within PFLU_RS24000 at 5376.478 kb on - strand, within PFLU_RS24000 at 5376.478 kb on - strand, within PFLU_RS24000 at 5376.478 kb on - strand, within PFLU_RS24000 at 5376.478 kb on - strand, within PFLU_RS24000 at 5376.478 kb on - strand, within PFLU_RS24000 at 5376.478 kb on - strand, within PFLU_RS24000 at 5376.478 kb on - strand, within PFLU_RS24000 at 5376.478 kb on - strand, within PFLU_RS24000
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxyphenylpropionic (C) 5 mM remove 5,374,221 + PFLU_RS23990 0.70 +0.0 5,374,221 + PFLU_RS23990 0.70 -0.1 5,374,222 - PFLU_RS23990 0.70 +2.6 5,374,222 - PFLU_RS23990 0.70 -0.9 5,374,222 - PFLU_RS23990 0.70 +1.0 5,374,238 + PFLU_RS23990 0.71 -0.5 5,374,238 + PFLU_RS23990 0.71 +0.0 5,374,238 + PFLU_RS23990 0.71 -1.2 5,374,238 + PFLU_RS23990 0.71 +0.2 5,374,238 + PFLU_RS23990 0.71 -0.1 5,374,238 + PFLU_RS23990 0.71 -0.7 5,374,296 + PFLU_RS23990 0.75 -0.2 5,374,296 + PFLU_RS23990 0.75 +1.5 5,374,296 + PFLU_RS23990 0.75 -2.4 5,374,297 - PFLU_RS23990 0.75 +0.8 5,374,297 - PFLU_RS23990 0.75 +0.0 5,374,297 - PFLU_RS23990 0.75 +1.6 5,374,356 - PFLU_RS23990 0.79 -0.7 5,374,356 - PFLU_RS23990 0.79 +0.4 5,374,360 - PFLU_RS23990 0.79 +0.1 5,374,360 - PFLU_RS23990 0.79 +0.1 5,374,360 - PFLU_RS23990 0.79 +2.3 5,374,360 - PFLU_RS23990 0.79 -0.6 5,374,569 + +1.7 5,374,569 + +0.3 5,374,570 - -0.3 5,374,570 - -0.3 5,374,578 + +0.3 5,374,578 + -0.6 5,374,578 + +2.6 5,374,579 - -1.2 5,374,650 + -0.7 5,374,651 - -0.4 5,374,651 - -0.1 5,374,651 - -0.7 5,374,690 + -2.6 5,374,766 - -0.4 5,374,766 - +1.7 5,374,939 + +0.0 5,374,939 + +0.0 5,374,939 + -0.4 5,374,939 + +0.8 5,374,939 + +1.6 5,374,940 - -0.2 5,374,940 - +0.4 5,374,940 - +0.3 5,375,013 + -0.3 5,375,061 - -0.4 5,375,259 + PFLU_RS23995 0.36 +0.1 5,375,316 + PFLU_RS23995 0.51 -1.7 5,375,316 + PFLU_RS23995 0.51 -0.8 5,375,316 + PFLU_RS23995 0.51 -0.3 5,375,316 + PFLU_RS23995 0.51 +0.0 5,375,316 + PFLU_RS23995 0.51 -0.3 5,375,316 + PFLU_RS23995 0.51 +0.1 5,375,316 + PFLU_RS23995 0.51 -2.0 5,375,316 + PFLU_RS23995 0.51 +0.1 5,375,316 + PFLU_RS23995 0.51 -1.3 5,375,316 + PFLU_RS23995 0.51 +1.0 5,375,316 + PFLU_RS23995 0.51 -1.4 5,375,316 + PFLU_RS23995 0.51 +0.6 5,375,316 + PFLU_RS23995 0.51 -3.0 5,375,316 + PFLU_RS23995 0.51 -0.4 5,375,316 + PFLU_RS23995 0.51 +1.0 5,375,316 + PFLU_RS23995 0.51 -0.2 5,375,317 - PFLU_RS23995 0.51 +0.0 5,375,317 - PFLU_RS23995 0.51 -0.4 5,375,317 - PFLU_RS23995 0.51 -0.3 5,375,317 - PFLU_RS23995 0.51 -1.2 5,375,317 - PFLU_RS23995 0.51 +0.6 5,375,317 - PFLU_RS23995 0.51 -0.5 5,375,317 - PFLU_RS23995 0.51 -2.2 5,375,317 - PFLU_RS23995 0.51 -0.4 5,375,317 - PFLU_RS23995 0.51 +0.2 5,375,317 - PFLU_RS23995 0.51 -1.0 5,375,317 - PFLU_RS23995 0.51 +2.9 5,375,317 - PFLU_RS23995 0.51 +0.1 5,375,317 - PFLU_RS23995 0.51 -0.7 5,375,317 - PFLU_RS23995 0.51 +0.4 5,375,317 - PFLU_RS23995 0.51 -1.0 5,375,317 - PFLU_RS23995 0.51 -2.7 5,375,317 - PFLU_RS23995 0.51 -2.1 5,375,317 - PFLU_RS23995 0.51 +0.3 5,375,317 - PFLU_RS23995 0.51 +0.6 5,375,317 - PFLU_RS23995 0.51 -0.3 5,375,317 - PFLU_RS23995 0.51 -0.1 5,375,317 - PFLU_RS23995 0.51 +0.6 5,375,317 - PFLU_RS23995 0.51 +1.6 5,375,317 - PFLU_RS23995 0.51 -0.2 5,375,317 - PFLU_RS23995 0.51 -0.2 5,375,317 - PFLU_RS23995 0.51 +1.6 5,375,317 - PFLU_RS23995 0.51 -1.2 5,375,447 + PFLU_RS23995 0.85 -2.7 5,375,469 + -0.1 5,375,469 + -0.6 5,375,470 - +0.6 5,375,470 - +1.2 5,375,523 + -1.3 5,375,533 - +0.1 5,375,755 + -0.3 5,375,755 + -0.7 5,375,755 + -0.7 5,375,755 + -3.2 5,375,755 + -0.2 5,375,755 + -2.4 5,375,756 - -0.2 5,375,756 - +0.9 5,375,756 - -0.5 5,375,756 - -0.8 5,375,756 - -1.2 5,375,756 - -1.4 5,375,756 - -2.3 5,375,756 - -1.6 5,375,756 - -1.8 5,375,770 + -0.6 5,375,770 + +0.7 5,375,770 + -1.3 5,375,770 + -0.7 5,375,770 + -0.7 5,375,771 - -1.4 5,375,771 - -1.5 5,375,771 - -1.6 5,375,771 - -0.6 5,375,773 + +1.0 5,375,773 + +0.9 5,375,773 + +0.3 5,375,773 + -1.3 5,375,773 + -1.0 5,375,773 + -0.4 5,375,773 + -0.8 5,375,773 + +1.6 5,375,773 + -1.0 5,375,774 - -0.4 5,375,774 - +0.0 5,375,774 - -0.6 5,375,774 - -0.5 5,375,774 - -0.6 5,375,774 - +0.2 5,375,774 - -0.3 5,375,774 - -2.2 5,375,774 - +1.6 5,375,774 - -1.8 5,375,796 + -2.1 5,375,830 + PFLU_RS24000 0.11 -2.0 5,375,839 + PFLU_RS24000 0.11 -0.3 5,375,839 + PFLU_RS24000 0.11 -1.2 5,375,839 + PFLU_RS24000 0.11 +0.7 5,375,839 + PFLU_RS24000 0.11 -1.8 5,375,839 + PFLU_RS24000 0.11 -0.3 5,375,840 - PFLU_RS24000 0.11 -1.2 5,375,840 - PFLU_RS24000 0.11 -0.6 5,375,849 - PFLU_RS24000 0.12 -1.0 5,376,090 + PFLU_RS24000 0.20 +0.8 5,376,160 + PFLU_RS24000 0.23 -0.4 5,376,361 + PFLU_RS24000 0.30 -1.2 5,376,361 + PFLU_RS24000 0.30 -1.9 5,376,361 + PFLU_RS24000 0.30 +1.1 5,376,361 + PFLU_RS24000 0.30 -1.2 5,376,362 - PFLU_RS24000 0.30 -0.7 5,376,362 - PFLU_RS24000 0.30 +0.6 5,376,477 + PFLU_RS24000 0.34 -1.0 5,376,477 + PFLU_RS24000 0.34 +0.9 5,376,477 + PFLU_RS24000 0.34 +0.0 5,376,477 + PFLU_RS24000 0.34 -2.0 5,376,477 + PFLU_RS24000 0.34 -1.2 5,376,478 - PFLU_RS24000 0.34 +0.0 5,376,478 - PFLU_RS24000 0.34 -1.0 5,376,478 - PFLU_RS24000 0.34 +0.0 5,376,478 - PFLU_RS24000 0.34 -1.5 5,376,478 - PFLU_RS24000 0.34 -1.0 5,376,478 - PFLU_RS24000 0.34 -1.7 5,376,478 - PFLU_RS24000 0.34 +0.4 5,376,478 - PFLU_RS24000 0.34 -0.1
Or see this region's nucleotide sequence