Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS11540

Experiment: 4-Hydroxyphenylpropionic (C) 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-Hydroxyphenylpropionic (C) 5 mM
2,558,661	+		PFLU_RS11535	0.40	+0.1
2,558,661	+		PFLU_RS11535	0.40	-0.4
2,558,662	-		PFLU_RS11535	0.40	-0.0
2,558,662	-		PFLU_RS11535	0.40	-0.9
2,558,721	+		PFLU_RS11535	0.44	-1.4
2,558,721	+		PFLU_RS11535	0.44	-0.3
2,558,721	+		PFLU_RS11535	0.44	-1.2
2,558,721	+		PFLU_RS11535	0.44	+0.4
2,558,721	+		PFLU_RS11535	0.44	-3.0
2,558,721	+		PFLU_RS11535	0.44	+0.1
2,558,721	+		PFLU_RS11535	0.44	-1.4
2,558,722	-		PFLU_RS11535	0.44	-0.0
2,558,722	-		PFLU_RS11535	0.44	+2.7
2,558,722	-		PFLU_RS11535	0.44	+0.3
2,558,722	-		PFLU_RS11535	0.44	-0.6
2,558,722	-		PFLU_RS11535	0.44	-0.4
2,558,722	-		PFLU_RS11535	0.44	+1.1
2,558,779	+		PFLU_RS11535	0.48	-0.0
2,558,780	-		PFLU_RS11535	0.48	+2.6
2,558,780	-		PFLU_RS11535	0.48	+0.4
2,558,780	-		PFLU_RS11535	0.48	+0.0
2,559,040	+		PFLU_RS11535	0.65	-1.8
2,559,041	-		PFLU_RS11535	0.65	-0.9
2,559,041	-		PFLU_RS11535	0.65	-1.9
2,559,085	-		PFLU_RS11535	0.68	-0.3
2,559,085	-		PFLU_RS11535	0.68	-2.4
2,559,144	+		PFLU_RS11535	0.72	+0.3
2,559,145	-		PFLU_RS11535	0.72	+2.4
2,559,145	-		PFLU_RS11535	0.72	-0.9
2,559,213	+		PFLU_RS11535	0.77	-0.0
2,559,214	-		PFLU_RS11535	0.77	-0.2
2,559,234	+		PFLU_RS11535	0.78	-0.2
2,559,234	+		PFLU_RS11535	0.78	+0.5
2,559,234	+		PFLU_RS11535	0.78	-1.8
2,559,235	-		PFLU_RS11535	0.78	-0.9
2,559,411	-				+0.0
2,559,411	-				-0.4
2,559,590	+				-0.5
2,559,591	-				+0.7
2,559,591	-				+1.3
2,559,643	+		PFLU_RS11540	0.11	+0.6
2,559,643	+		PFLU_RS11540	0.11	+0.4
2,559,644	-		PFLU_RS11540	0.11	-0.9
2,559,654	+		PFLU_RS11540	0.12	-1.5
2,559,654	+		PFLU_RS11540	0.12	+0.7
2,559,654	+		PFLU_RS11540	0.12	-0.4
2,559,654	+		PFLU_RS11540	0.12	-0.8
2,559,654	+		PFLU_RS11540	0.12	+0.8
2,559,654	+		PFLU_RS11540	0.12	-0.0
2,559,655	-		PFLU_RS11540	0.12	-0.4
2,559,655	-		PFLU_RS11540	0.12	-0.4
2,559,655	-		PFLU_RS11540	0.12	-1.2
2,559,655	-		PFLU_RS11540	0.12	+0.9
2,559,655	-		PFLU_RS11540	0.12	-2.0
2,559,655	-		PFLU_RS11540	0.12	+0.6
2,559,655	-		PFLU_RS11540	0.12	+0.5
2,559,800	+		PFLU_RS11540	0.30	+0.2
2,559,800	+		PFLU_RS11540	0.30	+0.5
2,559,800	+		PFLU_RS11540	0.30	-0.8
2,559,801	-		PFLU_RS11540	0.30	-0.0
2,559,801	-		PFLU_RS11540	0.30	-0.2
2,559,801	-		PFLU_RS11540	0.30	-0.9
2,559,827	+		PFLU_RS11540	0.33	-0.2
2,559,828	-		PFLU_RS11540	0.33	-0.8
2,559,828	-		PFLU_RS11540	0.33	-0.8
2,559,828	-		PFLU_RS11540	0.33	-0.2
2,559,839	+		PFLU_RS11540	0.34	-0.6
2,559,839	+		PFLU_RS11540	0.34	-0.5
2,560,065	-		PFLU_RS11540	0.61	+1.6
2,560,229	+		PFLU_RS11540	0.81	-1.0
2,560,229	+		PFLU_RS11540	0.81	-0.0
2,560,229	+		PFLU_RS11540	0.81	+0.6
2,560,229	+		PFLU_RS11540	0.81	-0.9
2,560,229	+		PFLU_RS11540	0.81	+0.2
2,560,229	+		PFLU_RS11540	0.81	+0.3
2,560,230	-		PFLU_RS11540	0.81	-0.2
2,560,230	-		PFLU_RS11540	0.81	-0.7
2,560,230	-		PFLU_RS11540	0.81	+0.4
2,560,287	+		PFLU_RS11540	0.88	+3.7
2,560,343	+				+0.9
2,560,344	-				+0.3
2,560,344	-				+0.2
2,560,430	+				+0.2
2,560,430	+				-0.4
2,560,430	+				+0.1
2,560,430	+				-0.9
2,560,430	+				+1.0
2,560,431	-				-0.8
2,560,467	+				-0.1
2,560,467	+				+0.8
2,560,467	+				-1.9
2,560,468	-				+0.3
2,560,470	-				-0.2
2,560,577	+		PFLU_RS11545	0.25	+1.7
2,560,577	+		PFLU_RS11545	0.25	-1.9
2,560,577	+		PFLU_RS11545	0.25	+0.4
2,560,577	+		PFLU_RS11545	0.25	-0.5
2,560,577	+		PFLU_RS11545	0.25	-0.2
2,560,577	+		PFLU_RS11545	0.25	-1.9
2,560,578	-		PFLU_RS11545	0.25	+1.6
2,560,578	-		PFLU_RS11545	0.25	+0.9
2,560,578	-		PFLU_RS11545	0.25	+0.2
2,560,578	-		PFLU_RS11545	0.25	+0.0
2,560,578	-		PFLU_RS11545	0.25	+0.2
2,560,578	-		PFLU_RS11545	0.25	+1.4
2,560,667	+		PFLU_RS11545	0.40	+0.8
2,560,667	+		PFLU_RS11545	0.40	-1.1
2,560,668	-		PFLU_RS11545	0.40	+0.9
2,560,778	+		PFLU_RS11545	0.59	+0.1
2,560,779	-		PFLU_RS11545	0.59	+0.6
2,560,779	-		PFLU_RS11545	0.59	-0.2
2,560,984	+				-0.9
2,560,984	+				+0.9
2,560,984	+				-1.8
2,560,985	-				+2.9
2,560,985	-				+1.5
2,560,985	-				+0.4
2,560,988	+				-0.9
2,560,988	+				+1.4
2,560,988	+				+1.1
2,560,988	+				+0.2
2,560,988	+				-1.3
2,560,989	-				-0.6
2,560,989	-				+0.7
2,560,989	-				-0.5
2,560,989	-				-1.4
2,560,989	-				+0.9
2,560,989	-				-1.0
2,560,989	-				-0.1
2,560,989	-				+1.4
2,560,989	-				+0.8
2,560,989	-				+1.1
2,560,989	-				+0.8
2,560,989	-				-1.2
2,560,989	-				+1.3
2,560,989	-				-0.1
2,561,281	+				+0.2
2,561,281	+				-1.8
2,561,282	-				-0.2
2,561,282	-				+0.5
2,561,284	+				-0.6
2,561,284	+				+0.2
2,561,376	+		PFLU_RS11550	0.11	-1.6
2,561,376	+		PFLU_RS11550	0.11	-1.6
2,561,376	+		PFLU_RS11550	0.11	+0.2
2,561,376	+		PFLU_RS11550	0.11	+0.6
2,561,377	-		PFLU_RS11550	0.11	-0.4
2,561,377	-		PFLU_RS11550	0.11	+0.8
2,561,377	-		PFLU_RS11550	0.11	+1.0