Experiment: 4-Hydroxyphenylpropionic (C) 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS03295 and PFLU_RS03300 are separated by 193 nucleotides PFLU_RS03300 and PFLU_RS03305 are separated by 49 nucleotides PFLU_RS03305 and PFLU_RS03310 are separated by 12 nucleotides PFLU_RS03310 and PFLU_RS03315 are separated by 87 nucleotides
PFLU_RS03295: PFLU_RS03295 - 8-oxoguanine deaminase, at 758,863 to 760,221
_RS03295
PFLU_RS03300: PFLU_RS03300 - SDR family oxidoreductase, at 760,415 to 761,101
_RS03300
PFLU_RS03305: PFLU_RS03305 - YigZ family protein, at 761,151 to 761,732
_RS03305
PFLU_RS03310: PFLU_RS03310 - TetR/AcrR family transcriptional regulator, at 761,745 to 762,404
_RS03310
PFLU_RS03315: PFLU_RS03315 - purine permease, at 762,492 to 763,886
_RS03315
Position (kb) 761
762 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 760.206 kb on + strand at 760.206 kb on + strand at 760.206 kb on + strand at 760.312 kb on + strand at 760.312 kb on + strand at 760.312 kb on + strand at 760.312 kb on + strand at 760.313 kb on - strand at 760.313 kb on - strand at 760.317 kb on + strand at 760.317 kb on + strand at 760.317 kb on + strand at 760.317 kb on + strand at 760.317 kb on + strand at 760.317 kb on + strand at 760.317 kb on + strand at 760.317 kb on + strand at 760.317 kb on + strand at 760.317 kb on + strand at 760.317 kb on + strand at 760.317 kb on + strand at 760.317 kb on + strand at 760.317 kb on + strand at 760.317 kb on + strand at 760.317 kb on + strand at 760.317 kb on + strand at 760.317 kb on + strand at 760.317 kb on + strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.323 kb on + strand at 760.323 kb on + strand at 760.323 kb on + strand at 760.323 kb on + strand at 760.323 kb on + strand at 760.324 kb on - strand at 760.324 kb on - strand at 760.340 kb on + strand at 760.340 kb on + strand at 760.340 kb on + strand at 760.340 kb on + strand at 760.340 kb on + strand at 760.340 kb on + strand at 760.341 kb on - strand at 760.341 kb on - strand at 760.341 kb on - strand at 760.341 kb on - strand at 760.346 kb on + strand at 760.352 kb on + strand at 760.352 kb on + strand at 760.352 kb on + strand at 760.353 kb on - strand at 760.353 kb on - strand at 760.353 kb on - strand at 760.441 kb on - strand at 760.473 kb on + strand at 760.473 kb on + strand at 760.473 kb on + strand at 760.474 kb on - strand at 760.474 kb on - strand at 760.474 kb on - strand at 760.543 kb on + strand, within PFLU_RS03300 at 760.577 kb on + strand, within PFLU_RS03300 at 760.577 kb on + strand, within PFLU_RS03300 at 760.577 kb on + strand, within PFLU_RS03300 at 760.577 kb on + strand, within PFLU_RS03300 at 760.578 kb on - strand, within PFLU_RS03300 at 760.609 kb on + strand, within PFLU_RS03300 at 760.609 kb on + strand, within PFLU_RS03300 at 760.610 kb on - strand, within PFLU_RS03300 at 760.610 kb on - strand, within PFLU_RS03300 at 760.610 kb on - strand, within PFLU_RS03300 at 760.610 kb on - strand, within PFLU_RS03300 at 760.610 kb on - strand, within PFLU_RS03300 at 760.610 kb on - strand, within PFLU_RS03300 at 760.610 kb on - strand, within PFLU_RS03300 at 760.653 kb on + strand, within PFLU_RS03300 at 760.653 kb on + strand, within PFLU_RS03300 at 760.653 kb on + strand, within PFLU_RS03300 at 760.654 kb on - strand, within PFLU_RS03300 at 760.654 kb on - strand, within PFLU_RS03300 at 760.719 kb on - strand, within PFLU_RS03300 at 760.786 kb on + strand, within PFLU_RS03300 at 760.787 kb on - strand, within PFLU_RS03300 at 761.096 kb on - strand at 761.096 kb on - strand at 761.160 kb on + strand at 761.160 kb on + strand at 761.160 kb on + strand at 761.160 kb on + strand at 761.160 kb on + strand at 761.160 kb on + strand at 761.161 kb on - strand at 761.161 kb on - strand at 761.161 kb on - strand at 761.161 kb on - strand at 761.161 kb on - strand at 761.161 kb on - strand at 761.161 kb on - strand at 761.168 kb on + strand at 761.168 kb on + strand at 761.169 kb on - strand at 761.393 kb on + strand, within PFLU_RS03305 at 761.393 kb on + strand, within PFLU_RS03305 at 761.411 kb on - strand, within PFLU_RS03305 at 761.452 kb on + strand, within PFLU_RS03305 at 761.614 kb on + strand, within PFLU_RS03305 at 761.614 kb on + strand, within PFLU_RS03305 at 761.615 kb on - strand, within PFLU_RS03305 at 761.615 kb on - strand, within PFLU_RS03305 at 761.615 kb on - strand, within PFLU_RS03305 at 761.615 kb on - strand, within PFLU_RS03305 at 761.672 kb on + strand, within PFLU_RS03305 at 761.673 kb on - strand, within PFLU_RS03305 at 761.673 kb on - strand, within PFLU_RS03305 at 761.689 kb on - strand at 761.732 kb on + strand at 761.732 kb on + strand at 761.732 kb on + strand at 761.732 kb on + strand at 761.732 kb on + strand at 761.732 kb on + strand at 761.733 kb on - strand at 761.733 kb on - strand at 761.733 kb on - strand at 761.733 kb on - strand at 761.733 kb on - strand at 761.733 kb on - strand at 761.733 kb on - strand at 761.733 kb on - strand at 761.746 kb on + strand at 761.746 kb on + strand at 761.747 kb on - strand at 761.747 kb on - strand at 761.747 kb on - strand at 761.749 kb on + strand at 761.750 kb on - strand at 761.750 kb on - strand at 761.876 kb on - strand, within PFLU_RS03310 at 761.876 kb on - strand, within PFLU_RS03310 at 761.876 kb on - strand, within PFLU_RS03310 at 761.923 kb on - strand, within PFLU_RS03310 at 762.008 kb on - strand, within PFLU_RS03310 at 762.103 kb on + strand, within PFLU_RS03310 at 762.103 kb on + strand, within PFLU_RS03310 at 762.103 kb on + strand, within PFLU_RS03310 at 762.103 kb on + strand, within PFLU_RS03310 at 762.104 kb on - strand, within PFLU_RS03310 at 762.104 kb on - strand, within PFLU_RS03310 at 762.104 kb on - strand, within PFLU_RS03310 at 762.104 kb on - strand, within PFLU_RS03310 at 762.194 kb on + strand, within PFLU_RS03310 at 762.195 kb on - strand, within PFLU_RS03310 at 762.196 kb on + strand, within PFLU_RS03310 at 762.196 kb on + strand, within PFLU_RS03310 at 762.196 kb on + strand, within PFLU_RS03310 at 762.196 kb on + strand, within PFLU_RS03310 at 762.196 kb on + strand, within PFLU_RS03310 at 762.196 kb on + strand, within PFLU_RS03310 at 762.196 kb on + strand, within PFLU_RS03310 at 762.196 kb on + strand, within PFLU_RS03310 at 762.196 kb on + strand, within PFLU_RS03310 at 762.196 kb on + strand, within PFLU_RS03310 at 762.196 kb on + strand, within PFLU_RS03310 at 762.196 kb on + strand, within PFLU_RS03310 at 762.196 kb on + strand, within PFLU_RS03310 at 762.197 kb on - strand, within PFLU_RS03310 at 762.197 kb on - strand, within PFLU_RS03310 at 762.197 kb on - strand, within PFLU_RS03310 at 762.197 kb on - strand, within PFLU_RS03310 at 762.197 kb on - strand, within PFLU_RS03310 at 762.197 kb on - strand, within PFLU_RS03310 at 762.197 kb on - strand, within PFLU_RS03310 at 762.197 kb on - strand, within PFLU_RS03310 at 762.197 kb on - strand, within PFLU_RS03310 at 762.197 kb on - strand, within PFLU_RS03310 at 762.197 kb on - strand, within PFLU_RS03310 at 762.197 kb on - strand, within PFLU_RS03310 at 762.220 kb on + strand, within PFLU_RS03310 at 762.220 kb on + strand, within PFLU_RS03310 at 762.220 kb on + strand, within PFLU_RS03310 at 762.220 kb on + strand, within PFLU_RS03310 at 762.220 kb on + strand, within PFLU_RS03310 at 762.220 kb on + strand, within PFLU_RS03310 at 762.220 kb on + strand, within PFLU_RS03310 at 762.221 kb on - strand, within PFLU_RS03310 at 762.221 kb on - strand, within PFLU_RS03310 at 762.221 kb on - strand, within PFLU_RS03310 at 762.221 kb on - strand, within PFLU_RS03310 at 762.221 kb on - strand, within PFLU_RS03310 at 762.221 kb on - strand, within PFLU_RS03310 at 762.221 kb on - strand, within PFLU_RS03310 at 762.221 kb on - strand, within PFLU_RS03310 at 762.221 kb on - strand, within PFLU_RS03310 at 762.221 kb on - strand, within PFLU_RS03310 at 762.221 kb on - strand, within PFLU_RS03310 at 762.221 kb on - strand, within PFLU_RS03310 at 762.221 kb on - strand, within PFLU_RS03310 at 762.221 kb on - strand, within PFLU_RS03310 at 762.221 kb on - strand, within PFLU_RS03310 at 762.223 kb on + strand, within PFLU_RS03310 at 762.223 kb on + strand, within PFLU_RS03310 at 762.223 kb on + strand, within PFLU_RS03310 at 762.224 kb on - strand, within PFLU_RS03310 at 762.224 kb on - strand, within PFLU_RS03310 at 762.224 kb on - strand, within PFLU_RS03310 at 762.224 kb on - strand, within PFLU_RS03310 at 762.224 kb on - strand, within PFLU_RS03310 at 762.224 kb on - strand, within PFLU_RS03310 at 762.286 kb on + strand, within PFLU_RS03310 at 762.286 kb on + strand, within PFLU_RS03310 at 762.286 kb on + strand, within PFLU_RS03310 at 762.286 kb on + strand, within PFLU_RS03310 at 762.287 kb on - strand, within PFLU_RS03310 at 762.287 kb on - strand, within PFLU_RS03310 at 762.427 kb on - strand at 762.447 kb on + strand at 762.447 kb on + strand at 762.448 kb on - strand at 762.448 kb on - strand at 762.448 kb on - strand at 762.484 kb on + strand at 762.484 kb on + strand at 762.564 kb on + strand at 762.565 kb on - strand at 762.565 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxyphenylpropionic (C) 5 mM remove 760,206 + +0.1 760,206 + -2.1 760,206 + +0.4 760,312 + -1.1 760,312 + -0.9 760,312 + -0.7 760,312 + -1.8 760,313 - -0.9 760,313 - -0.0 760,317 + -0.3 760,317 + -0.3 760,317 + -0.5 760,317 + -1.2 760,317 + -0.4 760,317 + +0.3 760,317 + -0.7 760,317 + +2.7 760,317 + -1.4 760,317 + +1.3 760,317 + -1.6 760,317 + +0.4 760,317 + -0.6 760,317 + -0.7 760,317 + -1.1 760,317 + -1.2 760,317 + -0.4 760,317 + +0.6 760,317 + -0.0 760,318 - +0.7 760,318 - +0.1 760,318 - -0.8 760,318 - -0.8 760,318 - +1.2 760,318 - -0.1 760,318 - -0.2 760,318 - +0.5 760,318 - +0.2 760,318 - +0.4 760,318 - -0.1 760,318 - +0.6 760,318 - +0.8 760,318 - +0.0 760,318 - +0.9 760,318 - -0.2 760,318 - +0.4 760,318 - +0.1 760,318 - -1.9 760,318 - +0.5 760,318 - +0.3 760,318 - +1.1 760,318 - +1.0 760,318 - -2.3 760,318 - -0.0 760,318 - +1.0 760,318 - +0.2 760,318 - +0.5 760,323 + +0.6 760,323 + -0.8 760,323 + +0.7 760,323 + +0.1 760,323 + +0.2 760,324 - -0.1 760,324 - +0.2 760,340 + +0.2 760,340 + -0.2 760,340 + +0.5 760,340 + +0.4 760,340 + -1.6 760,340 + +0.7 760,341 - -0.5 760,341 - -0.0 760,341 - +1.7 760,341 - -1.2 760,346 + +0.3 760,352 + +0.2 760,352 + -0.1 760,352 + +0.3 760,353 - -0.5 760,353 - -0.6 760,353 - -0.9 760,441 - -0.7 760,473 + -0.8 760,473 + +1.0 760,473 + -0.1 760,474 - +0.3 760,474 - -0.3 760,474 - -1.1 760,543 + PFLU_RS03300 0.19 -1.4 760,577 + PFLU_RS03300 0.24 +2.8 760,577 + PFLU_RS03300 0.24 +1.1 760,577 + PFLU_RS03300 0.24 -1.3 760,577 + PFLU_RS03300 0.24 +0.5 760,578 - PFLU_RS03300 0.24 -0.6 760,609 + PFLU_RS03300 0.28 -1.1 760,609 + PFLU_RS03300 0.28 -0.8 760,610 - PFLU_RS03300 0.28 +0.7 760,610 - PFLU_RS03300 0.28 -1.0 760,610 - PFLU_RS03300 0.28 -1.3 760,610 - PFLU_RS03300 0.28 -0.6 760,610 - PFLU_RS03300 0.28 +1.4 760,610 - PFLU_RS03300 0.28 -0.3 760,610 - PFLU_RS03300 0.28 -2.3 760,653 + PFLU_RS03300 0.35 -0.7 760,653 + PFLU_RS03300 0.35 -0.9 760,653 + PFLU_RS03300 0.35 +0.3 760,654 - PFLU_RS03300 0.35 +0.8 760,654 - PFLU_RS03300 0.35 +0.5 760,719 - PFLU_RS03300 0.44 +0.4 760,786 + PFLU_RS03300 0.54 +0.5 760,787 - PFLU_RS03300 0.54 +0.7 761,096 - -0.1 761,096 - +0.0 761,160 + -1.7 761,160 + +1.3 761,160 + -1.3 761,160 + -0.0 761,160 + +2.3 761,160 + -0.8 761,161 - -0.2 761,161 - +1.7 761,161 - -1.1 761,161 - -0.4 761,161 - +0.8 761,161 - +1.0 761,161 - -1.4 761,168 + +0.1 761,168 + +0.5 761,169 - -0.5 761,393 + PFLU_RS03305 0.42 -0.3 761,393 + PFLU_RS03305 0.42 -0.4 761,411 - PFLU_RS03305 0.45 +0.7 761,452 + PFLU_RS03305 0.52 +1.3 761,614 + PFLU_RS03305 0.80 +0.1 761,614 + PFLU_RS03305 0.80 +0.8 761,615 - PFLU_RS03305 0.80 -0.2 761,615 - PFLU_RS03305 0.80 +2.1 761,615 - PFLU_RS03305 0.80 -0.0 761,615 - PFLU_RS03305 0.80 +1.5 761,672 + PFLU_RS03305 0.90 -1.0 761,673 - PFLU_RS03305 0.90 +1.7 761,673 - PFLU_RS03305 0.90 +0.1 761,689 - -1.2 761,732 + +1.7 761,732 + +2.4 761,732 + +0.3 761,732 + +0.3 761,732 + -1.6 761,732 + -0.3 761,733 - -0.6 761,733 - +0.8 761,733 - -1.7 761,733 - -0.6 761,733 - -0.3 761,733 - -0.3 761,733 - +0.3 761,733 - -0.8 761,746 + +1.7 761,746 + -0.0 761,747 - -0.5 761,747 - -1.0 761,747 - +0.2 761,749 + +0.4 761,750 - +0.7 761,750 - -0.8 761,876 - PFLU_RS03310 0.20 -1.0 761,876 - PFLU_RS03310 0.20 -0.8 761,876 - PFLU_RS03310 0.20 -2.3 761,923 - PFLU_RS03310 0.27 +1.9 762,008 - PFLU_RS03310 0.40 +0.7 762,103 + PFLU_RS03310 0.54 +1.1 762,103 + PFLU_RS03310 0.54 -0.2 762,103 + PFLU_RS03310 0.54 -1.6 762,103 + PFLU_RS03310 0.54 +1.1 762,104 - PFLU_RS03310 0.54 +4.5 762,104 - PFLU_RS03310 0.54 -0.9 762,104 - PFLU_RS03310 0.54 -0.6 762,104 - PFLU_RS03310 0.54 -3.0 762,194 + PFLU_RS03310 0.68 +0.8 762,195 - PFLU_RS03310 0.68 -1.2 762,196 + PFLU_RS03310 0.68 -0.3 762,196 + PFLU_RS03310 0.68 -0.6 762,196 + PFLU_RS03310 0.68 -0.0 762,196 + PFLU_RS03310 0.68 -1.6 762,196 + PFLU_RS03310 0.68 -0.0 762,196 + PFLU_RS03310 0.68 -1.0 762,196 + PFLU_RS03310 0.68 -1.8 762,196 + PFLU_RS03310 0.68 +0.2 762,196 + PFLU_RS03310 0.68 -0.6 762,196 + PFLU_RS03310 0.68 +0.3 762,196 + PFLU_RS03310 0.68 +0.6 762,196 + PFLU_RS03310 0.68 -0.7 762,196 + PFLU_RS03310 0.68 -1.7 762,197 - PFLU_RS03310 0.68 +0.5 762,197 - PFLU_RS03310 0.68 -1.1 762,197 - PFLU_RS03310 0.68 -0.7 762,197 - PFLU_RS03310 0.68 -0.1 762,197 - PFLU_RS03310 0.68 +0.7 762,197 - PFLU_RS03310 0.68 -1.5 762,197 - PFLU_RS03310 0.68 -1.4 762,197 - PFLU_RS03310 0.68 +0.7 762,197 - PFLU_RS03310 0.68 -0.5 762,197 - PFLU_RS03310 0.68 +1.1 762,197 - PFLU_RS03310 0.68 +0.4 762,197 - PFLU_RS03310 0.68 -1.7 762,220 + PFLU_RS03310 0.72 +0.1 762,220 + PFLU_RS03310 0.72 +0.0 762,220 + PFLU_RS03310 0.72 +0.1 762,220 + PFLU_RS03310 0.72 -0.7 762,220 + PFLU_RS03310 0.72 -0.8 762,220 + PFLU_RS03310 0.72 -2.1 762,220 + PFLU_RS03310 0.72 -0.2 762,221 - PFLU_RS03310 0.72 -0.6 762,221 - PFLU_RS03310 0.72 +1.1 762,221 - PFLU_RS03310 0.72 +1.1 762,221 - PFLU_RS03310 0.72 -0.3 762,221 - PFLU_RS03310 0.72 -0.6 762,221 - PFLU_RS03310 0.72 -0.9 762,221 - PFLU_RS03310 0.72 -0.4 762,221 - PFLU_RS03310 0.72 -1.8 762,221 - PFLU_RS03310 0.72 -1.3 762,221 - PFLU_RS03310 0.72 +0.1 762,221 - PFLU_RS03310 0.72 -1.6 762,221 - PFLU_RS03310 0.72 +1.1 762,221 - PFLU_RS03310 0.72 -0.6 762,221 - PFLU_RS03310 0.72 -0.3 762,221 - PFLU_RS03310 0.72 +0.0 762,223 + PFLU_RS03310 0.72 -0.3 762,223 + PFLU_RS03310 0.72 -0.6 762,223 + PFLU_RS03310 0.72 -1.2 762,224 - PFLU_RS03310 0.73 -1.3 762,224 - PFLU_RS03310 0.73 -1.6 762,224 - PFLU_RS03310 0.73 +0.4 762,224 - PFLU_RS03310 0.73 -0.0 762,224 - PFLU_RS03310 0.73 +1.5 762,224 - PFLU_RS03310 0.73 -1.3 762,286 + PFLU_RS03310 0.82 +0.1 762,286 + PFLU_RS03310 0.82 +0.3 762,286 + PFLU_RS03310 0.82 -0.4 762,286 + PFLU_RS03310 0.82 +0.4 762,287 - PFLU_RS03310 0.82 -2.2 762,287 - PFLU_RS03310 0.82 -2.0 762,427 - -0.0 762,447 + +0.6 762,447 + -1.6 762,448 - -1.0 762,448 - -0.2 762,448 - -0.6 762,484 + +0.1 762,484 + +0.1 762,564 + -0.3 762,565 - -0.5 762,565 - +1.3
Or see this region's nucleotide sequence