Experiment: Cobalt chloride 0.08 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2060 and Psest_2061 are separated by 90 nucleotides Psest_2061 and Psest_2062 are separated by 280 nucleotides
Psest_2060: Psest_2060 - PQQ-dependent dehydrogenase, methanol/ethanol family, at 2,184,995 to 2,186,773
_2060
Psest_2061: Psest_2061 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 2,186,864 to 2,187,700
_2061
Psest_2062: Psest_2062 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 2,187,981 to 2,188,745
_2062
Position (kb)
2186
2187
2188 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2185.880 kb on + strand, within Psest_2060 at 2185.881 kb on - strand, within Psest_2060 at 2185.997 kb on + strand, within Psest_2060 at 2186.057 kb on + strand, within Psest_2060 at 2186.057 kb on + strand, within Psest_2060 at 2186.058 kb on - strand, within Psest_2060 at 2186.058 kb on - strand, within Psest_2060 at 2186.061 kb on + strand, within Psest_2060 at 2186.061 kb on + strand, within Psest_2060 at 2186.152 kb on + strand, within Psest_2060 at 2186.156 kb on + strand, within Psest_2060 at 2186.156 kb on + strand, within Psest_2060 at 2186.156 kb on + strand, within Psest_2060 at 2186.157 kb on - strand, within Psest_2060 at 2186.264 kb on + strand, within Psest_2060 at 2186.288 kb on + strand, within Psest_2060 at 2186.288 kb on + strand, within Psest_2060 at 2186.288 kb on + strand, within Psest_2060 at 2186.288 kb on + strand, within Psest_2060 at 2186.288 kb on + strand, within Psest_2060 at 2186.289 kb on - strand, within Psest_2060 at 2186.289 kb on - strand, within Psest_2060 at 2186.289 kb on - strand, within Psest_2060 at 2186.289 kb on - strand, within Psest_2060 at 2186.289 kb on - strand, within Psest_2060 at 2186.289 kb on - strand, within Psest_2060 at 2186.357 kb on + strand, within Psest_2060 at 2186.399 kb on + strand, within Psest_2060 at 2186.399 kb on + strand, within Psest_2060 at 2186.400 kb on - strand, within Psest_2060 at 2186.400 kb on - strand, within Psest_2060 at 2186.400 kb on - strand, within Psest_2060 at 2186.400 kb on - strand, within Psest_2060 at 2186.400 kb on - strand, within Psest_2060 at 2186.462 kb on + strand, within Psest_2060 at 2186.463 kb on - strand, within Psest_2060 at 2186.463 kb on - strand, within Psest_2060 at 2186.463 kb on - strand, within Psest_2060 at 2186.532 kb on - strand, within Psest_2060 at 2186.636 kb on + strand at 2186.636 kb on + strand at 2186.636 kb on + strand at 2186.636 kb on + strand at 2186.636 kb on + strand at 2186.637 kb on - strand at 2186.941 kb on - strand at 2187.027 kb on + strand, within Psest_2061 at 2187.027 kb on + strand, within Psest_2061 at 2187.028 kb on - strand, within Psest_2061 at 2187.028 kb on - strand, within Psest_2061 at 2187.028 kb on - strand, within Psest_2061 at 2187.172 kb on - strand, within Psest_2061 at 2187.172 kb on - strand, within Psest_2061 at 2187.172 kb on - strand, within Psest_2061 at 2187.172 kb on - strand, within Psest_2061 at 2187.433 kb on - strand, within Psest_2061 at 2187.486 kb on + strand, within Psest_2061 at 2187.754 kb on + strand at 2187.754 kb on + strand at 2187.754 kb on + strand at 2187.755 kb on - strand at 2187.824 kb on - strand at 2188.172 kb on + strand, within Psest_2062 at 2188.342 kb on + strand, within Psest_2062 at 2188.342 kb on + strand, within Psest_2062 at 2188.343 kb on - strand, within Psest_2062 at 2188.343 kb on - strand, within Psest_2062 at 2188.343 kb on - strand, within Psest_2062 at 2188.410 kb on + strand, within Psest_2062 at 2188.420 kb on - strand, within Psest_2062 at 2188.420 kb on - strand, within Psest_2062 at 2188.447 kb on - strand, within Psest_2062
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.08 mM remove 2,185,880 + Psest_2060 0.50 +0.5 2,185,881 - Psest_2060 0.50 -1.3 2,185,997 + Psest_2060 0.56 +1.3 2,186,057 + Psest_2060 0.60 -0.9 2,186,057 + Psest_2060 0.60 -1.1 2,186,058 - Psest_2060 0.60 -1.6 2,186,058 - Psest_2060 0.60 +0.1 2,186,061 + Psest_2060 0.60 +1.0 2,186,061 + Psest_2060 0.60 +0.9 2,186,152 + Psest_2060 0.65 +1.2 2,186,156 + Psest_2060 0.65 -0.3 2,186,156 + Psest_2060 0.65 +0.6 2,186,156 + Psest_2060 0.65 +0.4 2,186,157 - Psest_2060 0.65 +0.1 2,186,264 + Psest_2060 0.71 +1.2 2,186,288 + Psest_2060 0.73 +2.2 2,186,288 + Psest_2060 0.73 -0.3 2,186,288 + Psest_2060 0.73 +0.8 2,186,288 + Psest_2060 0.73 -0.6 2,186,288 + Psest_2060 0.73 -0.0 2,186,289 - Psest_2060 0.73 +0.3 2,186,289 - Psest_2060 0.73 -0.1 2,186,289 - Psest_2060 0.73 +0.7 2,186,289 - Psest_2060 0.73 -1.7 2,186,289 - Psest_2060 0.73 +1.0 2,186,289 - Psest_2060 0.73 +0.6 2,186,357 + Psest_2060 0.77 -1.2 2,186,399 + Psest_2060 0.79 +1.2 2,186,399 + Psest_2060 0.79 +0.8 2,186,400 - Psest_2060 0.79 -1.2 2,186,400 - Psest_2060 0.79 -0.7 2,186,400 - Psest_2060 0.79 +0.1 2,186,400 - Psest_2060 0.79 -0.8 2,186,400 - Psest_2060 0.79 +1.4 2,186,462 + Psest_2060 0.82 +1.4 2,186,463 - Psest_2060 0.83 -0.4 2,186,463 - Psest_2060 0.83 +0.9 2,186,463 - Psest_2060 0.83 -1.3 2,186,532 - Psest_2060 0.86 -0.7 2,186,636 + +0.1 2,186,636 + -0.9 2,186,636 + +0.5 2,186,636 + -0.3 2,186,636 + -0.2 2,186,637 - +0.7 2,186,941 - -3.0 2,187,027 + Psest_2061 0.19 +2.0 2,187,027 + Psest_2061 0.19 -1.7 2,187,028 - Psest_2061 0.20 +1.6 2,187,028 - Psest_2061 0.20 +1.2 2,187,028 - Psest_2061 0.20 +1.6 2,187,172 - Psest_2061 0.37 +0.1 2,187,172 - Psest_2061 0.37 +0.4 2,187,172 - Psest_2061 0.37 -2.6 2,187,172 - Psest_2061 0.37 +1.8 2,187,433 - Psest_2061 0.68 -0.8 2,187,486 + Psest_2061 0.74 -0.2 2,187,754 + +0.2 2,187,754 + -0.0 2,187,754 + +0.2 2,187,755 - -0.5 2,187,824 - -0.0 2,188,172 + Psest_2062 0.25 -0.8 2,188,342 + Psest_2062 0.47 -1.2 2,188,342 + Psest_2062 0.47 +0.2 2,188,343 - Psest_2062 0.47 -0.2 2,188,343 - Psest_2062 0.47 -0.8 2,188,343 - Psest_2062 0.47 -0.2 2,188,410 + Psest_2062 0.56 +2.1 2,188,420 - Psest_2062 0.57 -0.2 2,188,420 - Psest_2062 0.57 -0.3 2,188,447 - Psest_2062 0.61 -2.2
Or see this region's nucleotide sequence