Strain Fitness in Sinorhizobium meliloti 1021 around SMa0214

Experiment: Xylobiose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0209 and SMa0210 are separated by 94 nucleotidesSMa0210 and SMa0211 are separated by 142 nucleotidesSMa0211 and SMa0214 are separated by 217 nucleotidesSMa0214 and SMa0216 are separated by 31 nucleotidesSMa0216 and SMa0217 overlap by 4 nucleotides SMa0209: SMa0209 - hypothetical protein, at 114,669 to 115,757 SMa0209 SMa0210: SMa0210 - hypothetical protein, at 115,852 to 116,118 SMa0210 SMa0211: SMa0211 - hypothetical protein, at 116,261 to 116,455 SMa0211 SMa0214: SMa0214 - 5-keto-4-deoxyuronate isomerase, at 116,673 to 117,515 SMa0214 SMa0216: SMa0216 - ABC transporter ATP-binding protein, at 117,547 to 118,287 SMa0216 SMa0217: SMa0217 - ABC transporter permease, at 118,284 to 119,363 SMa0217 Position (kb) 116 117 118Strain fitness (log2 ratio) -1 0 1 2at 115.697 kb on + strandat 115.698 kb on - strandat 115.756 kb on - strandat 115.756 kb on - strandat 115.756 kb on - strandat 115.782 kb on + strandat 115.895 kb on + strand, within SMa0210at 115.960 kb on + strand, within SMa0210at 115.960 kb on + strand, within SMa0210at 116.009 kb on + strand, within SMa0210at 116.010 kb on - strand, within SMa0210at 116.020 kb on + strand, within SMa0210at 116.020 kb on + strand, within SMa0210at 116.123 kb on - strandat 116.132 kb on - strandat 116.284 kb on + strand, within SMa0211at 116.292 kb on - strand, within SMa0211at 116.544 kb on + strandat 116.604 kb on + strandat 116.605 kb on - strandat 116.670 kb on + strandat 116.670 kb on + strandat 116.670 kb on + strandat 116.670 kb on + strandat 116.675 kb on - strandat 116.890 kb on + strand, within SMa0214at 116.896 kb on + strandat 116.896 kb on + strand, within SMa0214at 117.013 kb on + strand, within SMa0214at 117.014 kb on - strand, within SMa0214at 117.130 kb on + strand, within SMa0214at 117.130 kb on + strand, within SMa0214at 117.130 kb on + strand, within SMa0214at 117.264 kb on - strand, within SMa0214at 117.387 kb on - strand, within SMa0214at 117.388 kb on + strand, within SMa0214at 117.388 kb on + strand, within SMa0214at 117.388 kb on + strand, within SMa0214at 117.388 kb on + strand, within SMa0214at 117.388 kb on + strand, within SMa0214at 117.388 kb on + strand, within SMa0214at 117.388 kb on + strand, within SMa0214at 117.389 kb on - strand, within SMa0214at 117.389 kb on - strand, within SMa0214at 117.389 kb on - strand, within SMa0214at 117.389 kb on - strand, within SMa0214at 117.486 kb on + strandat 117.487 kb on - strandat 117.487 kb on - strandat 117.509 kb on + strandat 117.509 kb on + strandat 117.510 kb on - strandat 117.510 kb on - strandat 117.589 kb on - strandat 117.657 kb on - strand, within SMa0216at 117.748 kb on + strand, within SMa0216at 117.748 kb on + strand, within SMa0216at 117.801 kb on - strand, within SMa0216at 117.939 kb on + strand, within SMa0216at 117.982 kb on - strand, within SMa0216at 118.017 kb on + strand, within SMa0216at 118.018 kb on - strand, within SMa0216at 118.025 kb on + strand, within SMa0216at 118.025 kb on + strand, within SMa0216at 118.025 kb on + strand, within SMa0216at 118.026 kb on - strand, within SMa0216at 118.100 kb on + strand, within SMa0216at 118.254 kb on + strandat 118.255 kb on - strandat 118.309 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylobiose (C)
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115,697 + -0.4
115,698 - -0.2
115,756 - +0.1
115,756 - -0.3
115,756 - +0.7
115,782 + +0.1
115,895 + SMa0210 0.16 -1.3
115,960 + SMa0210 0.40 +0.7
115,960 + SMa0210 0.40 -0.1
116,009 + SMa0210 0.59 +0.2
116,010 - SMa0210 0.59 +0.6
116,020 + SMa0210 0.63 +0.2
116,020 + SMa0210 0.63 +0.1
116,123 - -0.2
116,132 - +0.1
116,284 + SMa0211 0.12 -1.1
116,292 - SMa0211 0.16 +0.1
116,544 + -1.4
116,604 + -0.2
116,605 - -0.2
116,670 + -1.4
116,670 + -0.3
116,670 + -0.3
116,670 + -1.0
116,675 - +0.5
116,890 + SMa0214 0.26 -0.1
116,896 + +0.7
116,896 + SMa0214 0.26 -0.1
117,013 + SMa0214 0.40 +0.5
117,014 - SMa0214 0.40 +1.7
117,130 + SMa0214 0.54 +0.6
117,130 + SMa0214 0.54 +0.2
117,130 + SMa0214 0.54 +1.2
117,264 - SMa0214 0.70 -0.3
117,387 - SMa0214 0.85 -0.5
117,388 + SMa0214 0.85 -0.3
117,388 + SMa0214 0.85 +2.0
117,388 + SMa0214 0.85 +0.6
117,388 + SMa0214 0.85 +0.5
117,388 + SMa0214 0.85 +0.1
117,388 + SMa0214 0.85 -0.1
117,388 + SMa0214 0.85 -0.6
117,389 - SMa0214 0.85 +0.7
117,389 - SMa0214 0.85 +0.5
117,389 - SMa0214 0.85 +1.0
117,389 - SMa0214 0.85 +0.6
117,486 + -0.6
117,487 - +0.3
117,487 - +0.7
117,509 + +0.7
117,509 + -0.4
117,510 - +0.1
117,510 - +2.3
117,589 - -0.6
117,657 - SMa0216 0.15 -0.1
117,748 + SMa0216 0.27 +0.7
117,748 + SMa0216 0.27 +1.1
117,801 - SMa0216 0.34 -0.8
117,939 + SMa0216 0.53 +0.4
117,982 - SMa0216 0.59 +1.7
118,017 + SMa0216 0.63 -0.1
118,018 - SMa0216 0.64 +0.3
118,025 + SMa0216 0.65 +0.2
118,025 + SMa0216 0.65 +0.2
118,025 + SMa0216 0.65 +0.6
118,026 - SMa0216 0.65 +0.3
118,100 + SMa0216 0.75 -0.3
118,254 + +0.9
118,255 - -0.1
118,309 - +0.2

Or see this region's nucleotide sequence