Experiment: Xylobiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21196 and SM_b21197 are separated by 51 nucleotides SM_b21197 and SM_b21198 overlap by 8 nucleotides SM_b21198 and SM_b21199 are separated by 1 nucleotides
SM_b21196: SM_b21196 - oligopeptide uptake ABC transporter substrate-binding protein precursor, at 945,018 to 946,616
_b21196
SM_b21197: SM_b21197 - oligopeptide uptake ABC transporter permease, at 946,668 to 947,591
_b21197
SM_b21198: SM_b21198 - oligopeptide uptake ABC transporter permease, at 947,584 to 948,714
_b21198
SM_b21199: SM_b21199 - oligopeptide ABC transporter ATP-binding protein, at 948,716 to 950,317
_b21199
Position (kb) 947
948
949 Strain fitness (log2 ratio) -1
0
1
2 at 946.824 kb on + strand, within SM_b21197 at 946.824 kb on + strand, within SM_b21197 at 946.824 kb on + strand, within SM_b21197 at 946.854 kb on + strand, within SM_b21197 at 946.855 kb on - strand, within SM_b21197 at 946.855 kb on - strand, within SM_b21197 at 946.855 kb on - strand, within SM_b21197 at 946.855 kb on - strand, within SM_b21197 at 946.859 kb on + strand, within SM_b21197 at 946.859 kb on + strand, within SM_b21197 at 946.860 kb on - strand, within SM_b21197 at 946.863 kb on + strand at 946.863 kb on + strand, within SM_b21197 at 946.863 kb on + strand, within SM_b21197 at 946.864 kb on - strand, within SM_b21197 at 946.864 kb on - strand, within SM_b21197 at 946.864 kb on - strand, within SM_b21197 at 946.864 kb on - strand, within SM_b21197 at 946.864 kb on - strand, within SM_b21197 at 946.864 kb on - strand, within SM_b21197 at 946.867 kb on + strand, within SM_b21197 at 946.867 kb on + strand, within SM_b21197 at 946.867 kb on + strand, within SM_b21197 at 946.868 kb on - strand, within SM_b21197 at 946.902 kb on + strand, within SM_b21197 at 946.902 kb on + strand, within SM_b21197 at 946.902 kb on + strand, within SM_b21197 at 946.903 kb on - strand, within SM_b21197 at 946.908 kb on + strand, within SM_b21197 at 946.908 kb on + strand, within SM_b21197 at 946.908 kb on + strand, within SM_b21197 at 946.985 kb on - strand, within SM_b21197 at 946.985 kb on - strand, within SM_b21197 at 947.302 kb on - strand, within SM_b21197 at 947.370 kb on + strand, within SM_b21197 at 947.371 kb on - strand, within SM_b21197 at 947.371 kb on - strand, within SM_b21197 at 947.432 kb on + strand, within SM_b21197 at 947.433 kb on - strand, within SM_b21197 at 947.433 kb on - strand, within SM_b21197 at 947.435 kb on - strand, within SM_b21197 at 947.435 kb on - strand, within SM_b21197 at 947.452 kb on - strand, within SM_b21197 at 947.452 kb on - strand, within SM_b21197 at 947.481 kb on + strand, within SM_b21197 at 947.481 kb on + strand, within SM_b21197 at 947.482 kb on - strand, within SM_b21197 at 947.483 kb on + strand, within SM_b21197 at 947.483 kb on + strand, within SM_b21197 at 947.483 kb on + strand, within SM_b21197 at 947.483 kb on + strand, within SM_b21197 at 947.484 kb on - strand, within SM_b21197 at 947.484 kb on - strand, within SM_b21197 at 947.484 kb on - strand, within SM_b21197 at 947.484 kb on - strand, within SM_b21197 at 947.549 kb on + strand at 947.590 kb on + strand at 947.592 kb on + strand at 947.755 kb on + strand, within SM_b21198 at 947.756 kb on - strand, within SM_b21198 at 947.756 kb on - strand, within SM_b21198 at 947.776 kb on + strand, within SM_b21198 at 947.776 kb on + strand, within SM_b21198 at 947.777 kb on - strand, within SM_b21198 at 947.815 kb on - strand, within SM_b21198 at 948.047 kb on - strand, within SM_b21198 at 948.168 kb on - strand, within SM_b21198 at 948.168 kb on - strand, within SM_b21198 at 948.168 kb on - strand, within SM_b21198 at 948.190 kb on - strand, within SM_b21198 at 948.207 kb on + strand, within SM_b21198 at 948.239 kb on - strand, within SM_b21198 at 948.375 kb on + strand at 948.457 kb on - strand, within SM_b21198 at 948.457 kb on - strand, within SM_b21198 at 948.457 kb on - strand, within SM_b21198 at 948.558 kb on + strand, within SM_b21198 at 948.599 kb on + strand, within SM_b21198 at 948.599 kb on + strand, within SM_b21198 at 948.600 kb on - strand, within SM_b21198 at 948.600 kb on - strand, within SM_b21198 at 948.600 kb on - strand, within SM_b21198 at 948.600 kb on - strand, within SM_b21198 at 948.747 kb on + strand at 948.747 kb on + strand at 949.043 kb on + strand, within SM_b21199 at 949.043 kb on + strand, within SM_b21199 at 949.044 kb on - strand, within SM_b21199 at 949.383 kb on - strand, within SM_b21199 at 949.383 kb on - strand, within SM_b21199 at 949.383 kb on - strand, within SM_b21199 at 949.447 kb on + strand, within SM_b21199 at 949.447 kb on + strand, within SM_b21199 at 949.447 kb on + strand, within SM_b21199 at 949.472 kb on + strand, within SM_b21199 at 949.473 kb on - strand, within SM_b21199 at 949.473 kb on - strand, within SM_b21199 at 949.474 kb on + strand, within SM_b21199 at 949.475 kb on - strand, within SM_b21199 at 949.475 kb on - strand, within SM_b21199 at 949.571 kb on + strand, within SM_b21199 at 949.571 kb on + strand, within SM_b21199 at 949.573 kb on + strand, within SM_b21199 at 949.573 kb on + strand, within SM_b21199 at 949.574 kb on - strand, within SM_b21199 at 949.574 kb on - strand, within SM_b21199 at 949.639 kb on + strand, within SM_b21199
Per-strain Table
Position Strand Gene LocusTag Fraction Xylobiose (C) remove 946,824 + SM_b21197 0.17 -0.2 946,824 + SM_b21197 0.17 -0.5 946,824 + SM_b21197 0.17 +0.4 946,854 + SM_b21197 0.20 +0.1 946,855 - SM_b21197 0.20 +0.2 946,855 - SM_b21197 0.20 +0.5 946,855 - SM_b21197 0.20 +0.4 946,855 - SM_b21197 0.20 -0.0 946,859 + SM_b21197 0.21 +1.3 946,859 + SM_b21197 0.21 -0.2 946,860 - SM_b21197 0.21 +0.7 946,863 + +1.6 946,863 + SM_b21197 0.21 -0.8 946,863 + SM_b21197 0.21 -0.2 946,864 - SM_b21197 0.21 -0.1 946,864 - SM_b21197 0.21 -0.2 946,864 - SM_b21197 0.21 -0.3 946,864 - SM_b21197 0.21 +0.3 946,864 - SM_b21197 0.21 +0.3 946,864 - SM_b21197 0.21 +0.1 946,867 + SM_b21197 0.22 +0.2 946,867 + SM_b21197 0.22 -0.6 946,867 + SM_b21197 0.22 +0.4 946,868 - SM_b21197 0.22 +0.0 946,902 + SM_b21197 0.25 -0.3 946,902 + SM_b21197 0.25 +0.2 946,902 + SM_b21197 0.25 +0.2 946,903 - SM_b21197 0.25 -1.2 946,908 + SM_b21197 0.26 +0.4 946,908 + SM_b21197 0.26 +0.1 946,908 + SM_b21197 0.26 -0.5 946,985 - SM_b21197 0.34 +1.1 946,985 - SM_b21197 0.34 +0.1 947,302 - SM_b21197 0.69 +0.6 947,370 + SM_b21197 0.76 +0.0 947,371 - SM_b21197 0.76 +0.1 947,371 - SM_b21197 0.76 +0.2 947,432 + SM_b21197 0.83 +0.5 947,433 - SM_b21197 0.83 +0.6 947,433 - SM_b21197 0.83 +1.0 947,435 - SM_b21197 0.83 +0.4 947,435 - SM_b21197 0.83 +0.3 947,452 - SM_b21197 0.85 +0.1 947,452 - SM_b21197 0.85 +0.2 947,481 + SM_b21197 0.88 -0.6 947,481 + SM_b21197 0.88 +0.6 947,482 - SM_b21197 0.88 +0.3 947,483 + SM_b21197 0.88 +0.2 947,483 + SM_b21197 0.88 +0.0 947,483 + SM_b21197 0.88 +0.3 947,483 + SM_b21197 0.88 -1.3 947,484 - SM_b21197 0.88 +0.6 947,484 - SM_b21197 0.88 -0.2 947,484 - SM_b21197 0.88 -0.3 947,484 - SM_b21197 0.88 -0.5 947,549 + +0.4 947,590 + -0.2 947,592 + -0.7 947,755 + SM_b21198 0.15 +0.3 947,756 - SM_b21198 0.15 +0.1 947,756 - SM_b21198 0.15 +0.1 947,776 + SM_b21198 0.17 +1.4 947,776 + SM_b21198 0.17 -0.5 947,777 - SM_b21198 0.17 +1.7 947,815 - SM_b21198 0.20 +0.0 948,047 - SM_b21198 0.41 +1.9 948,168 - SM_b21198 0.52 +0.4 948,168 - SM_b21198 0.52 +0.9 948,168 - SM_b21198 0.52 -0.4 948,190 - SM_b21198 0.54 -0.6 948,207 + SM_b21198 0.55 +0.6 948,239 - SM_b21198 0.58 +0.5 948,375 + +1.6 948,457 - SM_b21198 0.77 +0.6 948,457 - SM_b21198 0.77 +0.6 948,457 - SM_b21198 0.77 +0.2 948,558 + SM_b21198 0.86 +0.1 948,599 + SM_b21198 0.90 +1.3 948,599 + SM_b21198 0.90 +0.0 948,600 - SM_b21198 0.90 -0.2 948,600 - SM_b21198 0.90 -0.1 948,600 - SM_b21198 0.90 +0.1 948,600 - SM_b21198 0.90 +0.1 948,747 + -0.4 948,747 + +0.0 949,043 + SM_b21199 0.20 -0.1 949,043 + SM_b21199 0.20 -0.3 949,044 - SM_b21199 0.20 -0.3 949,383 - SM_b21199 0.42 +0.2 949,383 - SM_b21199 0.42 +0.2 949,383 - SM_b21199 0.42 +0.0 949,447 + SM_b21199 0.46 -0.3 949,447 + SM_b21199 0.46 -0.3 949,447 + SM_b21199 0.46 +0.0 949,472 + SM_b21199 0.47 +0.2 949,473 - SM_b21199 0.47 +0.5 949,473 - SM_b21199 0.47 +0.3 949,474 + SM_b21199 0.47 -0.6 949,475 - SM_b21199 0.47 +0.1 949,475 - SM_b21199 0.47 +1.0 949,571 + SM_b21199 0.53 +0.7 949,571 + SM_b21199 0.53 +1.1 949,573 + SM_b21199 0.53 +0.2 949,573 + SM_b21199 0.53 +1.1 949,574 - SM_b21199 0.54 -0.0 949,574 - SM_b21199 0.54 -0.3 949,639 + SM_b21199 0.58 +0.1
Or see this region's nucleotide sequence