Experiment: p-Coumaric (C) 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS04400 and PFLU_RS04405 are separated by 185 nucleotides PFLU_RS04405 and PFLU_RS04410 overlap by 1 nucleotides PFLU_RS04410 and PFLU_RS04415 overlap by 14 nucleotides PFLU_RS04415 and PFLU_RS04420 are separated by 8 nucleotides
PFLU_RS04400: PFLU_RS04400 - RNA polymerase factor sigma-54, at 991,343 to 992,836
_RS04400
PFLU_RS04405: PFLU_RS04405 - LPS export ABC transporter ATP-binding protein, at 993,022 to 993,747
_RS04405
PFLU_RS04410: PFLU_RS04410 - lipopolysaccharide transport periplasmic protein LptA, at 993,747 to 994,280
_RS04410
PFLU_RS04415: PFLU_RS04415 - LPS export ABC transporter periplasmic protein LptC, at 994,267 to 994,839
_RS04415
PFLU_RS04420: PFLU_RS04420 - HAD family hydrolase, at 994,848 to 995,372
_RS04420
Position (kb) 993
994
995 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 992.848 kb on - strand at 992.848 kb on - strand at 992.856 kb on - strand at 992.906 kb on + strand at 992.907 kb on - strand at 992.907 kb on - strand at 992.915 kb on + strand at 992.916 kb on - strand at 992.916 kb on - strand at 992.916 kb on - strand at 992.916 kb on - strand at 992.942 kb on + strand at 992.959 kb on - strand at 992.959 kb on - strand at 993.024 kb on - strand at 993.024 kb on - strand at 993.024 kb on - strand at 994.292 kb on - strand at 994.292 kb on - strand at 994.292 kb on - strand at 994.401 kb on - strand, within PFLU_RS04415 at 994.401 kb on - strand, within PFLU_RS04415 at 994.401 kb on - strand, within PFLU_RS04415 at 994.418 kb on - strand, within PFLU_RS04415 at 994.418 kb on - strand, within PFLU_RS04415 at 994.418 kb on - strand, within PFLU_RS04415 at 994.418 kb on - strand, within PFLU_RS04415 at 994.808 kb on - strand at 994.840 kb on - strand at 994.840 kb on - strand at 994.840 kb on - strand at 994.840 kb on - strand at 994.840 kb on - strand at 994.840 kb on - strand at 994.840 kb on - strand at 994.840 kb on - strand at 994.840 kb on - strand at 994.840 kb on - strand at 994.850 kb on - strand at 994.850 kb on - strand at 994.850 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 995.066 kb on - strand, within PFLU_RS04420 at 995.070 kb on + strand, within PFLU_RS04420
Per-strain Table
Position Strand Gene LocusTag Fraction p-Coumaric (C) 5 mM remove 992,848 - +1.4 992,848 - +1.4 992,856 - +0.2 992,906 + +4.2 992,907 - +1.4 992,907 - +2.2 992,915 + +4.7 992,916 - -0.3 992,916 - -1.4 992,916 - +0.3 992,916 - -1.4 992,942 + +1.4 992,959 - -2.1 992,959 - +0.5 993,024 - +0.8 993,024 - +0.1 993,024 - -1.8 994,292 - +0.1 994,292 - -2.0 994,292 - -1.6 994,401 - PFLU_RS04415 0.23 -1.7 994,401 - PFLU_RS04415 0.23 +1.4 994,401 - PFLU_RS04415 0.23 -3.7 994,418 - PFLU_RS04415 0.26 -1.6 994,418 - PFLU_RS04415 0.26 -0.4 994,418 - PFLU_RS04415 0.26 -2.8 994,418 - PFLU_RS04415 0.26 -0.8 994,808 - -0.6 994,840 - -0.4 994,840 - +1.8 994,840 - -0.4 994,840 - +1.0 994,840 - +0.4 994,840 - +0.3 994,840 - +2.4 994,840 - -1.4 994,840 - -1.3 994,840 - -1.2 994,850 - +1.7 994,850 - -1.1 994,850 - -0.2 994,852 - -0.4 994,852 - -0.9 994,852 - -0.4 994,852 - +0.2 994,852 - +0.6 994,852 - -1.6 994,852 - -1.6 994,852 - -0.2 994,852 - -1.1 994,852 - -2.3 994,852 - +0.9 994,852 - -0.1 994,852 - -0.8 994,852 - -1.7 994,852 - +1.4 994,852 - +0.1 994,852 - -0.8 994,852 - -0.2 994,852 - -0.6 994,852 - +0.5 994,852 - +1.4 994,852 - -0.8 994,852 - -1.4 994,852 - -1.8 994,852 - -0.7 994,852 - -1.0 994,852 - -0.7 994,852 - +1.4 994,852 - -0.4 994,852 - -0.7 994,852 - +0.8 994,852 - +0.0 994,852 - -0.7 994,852 - +0.1 994,852 - -2.8 994,852 - -1.6 994,852 - +0.4 994,852 - -0.1 995,066 - PFLU_RS04420 0.42 +2.4 995,070 + PFLU_RS04420 0.42 +1.4
Or see this region's nucleotide sequence