Experiment: p-Coumaric (C) 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS01620 and PFLU_RS01625 are separated by 9 nucleotides PFLU_RS01625 and PFLU_RS01630 are separated by 66 nucleotides PFLU_RS01630 and PFLU_RS01635 are separated by 3 nucleotides
PFLU_RS01620: PFLU_RS01620 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase, at 362,169 to 362,906
_RS01620
PFLU_RS01625: PFLU_RS01625 - imidazole glycerol phosphate synthase subunit HisF, at 362,916 to 363,686
_RS01625
PFLU_RS01630: PFLU_RS01630 - ABC transporter substrate-binding protein, at 363,753 to 364,508
_RS01630
PFLU_RS01635: PFLU_RS01635 - serine protease, at 364,512 to 366,077
_RS01635
Position (kb) 363
364
365 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 362.847 kb on + strand at 362.847 kb on + strand at 362.848 kb on - strand at 362.848 kb on - strand at 362.848 kb on - strand at 362.848 kb on - strand at 362.855 kb on + strand at 362.855 kb on + strand at 362.855 kb on + strand at 362.855 kb on + strand at 362.884 kb on - strand at 362.884 kb on - strand at 362.884 kb on - strand at 362.884 kb on - strand at 362.884 kb on - strand at 362.884 kb on - strand at 362.895 kb on + strand at 362.895 kb on + strand at 362.896 kb on - strand at 362.896 kb on - strand at 362.896 kb on - strand at 362.896 kb on - strand at 363.033 kb on + strand, within PFLU_RS01625 at 363.059 kb on + strand, within PFLU_RS01625 at 363.110 kb on + strand, within PFLU_RS01625 at 363.110 kb on + strand, within PFLU_RS01625 at 363.111 kb on - strand, within PFLU_RS01625 at 363.140 kb on + strand, within PFLU_RS01625 at 363.140 kb on + strand, within PFLU_RS01625 at 363.377 kb on + strand, within PFLU_RS01625 at 363.611 kb on + strand at 363.612 kb on - strand at 363.630 kb on + strand at 363.630 kb on + strand at 363.630 kb on + strand at 363.630 kb on + strand at 363.631 kb on - strand at 363.631 kb on - strand at 363.631 kb on - strand at 363.654 kb on + strand at 363.654 kb on + strand at 363.654 kb on + strand at 363.654 kb on + strand at 363.654 kb on + strand at 363.654 kb on + strand at 363.654 kb on + strand at 363.654 kb on + strand at 363.654 kb on + strand at 363.654 kb on + strand at 363.655 kb on - strand at 363.655 kb on - strand at 363.655 kb on - strand at 363.655 kb on - strand at 363.671 kb on + strand at 363.785 kb on + strand at 363.785 kb on + strand at 363.785 kb on + strand at 363.785 kb on + strand at 363.785 kb on + strand at 363.786 kb on - strand at 363.786 kb on - strand at 363.870 kb on + strand, within PFLU_RS01630 at 363.870 kb on + strand, within PFLU_RS01630 at 363.870 kb on + strand, within PFLU_RS01630 at 363.870 kb on + strand, within PFLU_RS01630 at 363.972 kb on + strand, within PFLU_RS01630 at 363.973 kb on - strand, within PFLU_RS01630 at 363.973 kb on - strand, within PFLU_RS01630 at 364.008 kb on + strand, within PFLU_RS01630 at 364.009 kb on - strand, within PFLU_RS01630 at 364.009 kb on - strand, within PFLU_RS01630 at 364.136 kb on + strand, within PFLU_RS01630 at 364.136 kb on + strand, within PFLU_RS01630 at 364.136 kb on + strand, within PFLU_RS01630 at 364.137 kb on - strand, within PFLU_RS01630 at 364.137 kb on - strand, within PFLU_RS01630 at 364.137 kb on - strand, within PFLU_RS01630 at 364.137 kb on - strand, within PFLU_RS01630 at 364.191 kb on + strand, within PFLU_RS01630 at 364.191 kb on + strand, within PFLU_RS01630 at 364.191 kb on + strand, within PFLU_RS01630 at 364.192 kb on - strand, within PFLU_RS01630 at 364.192 kb on - strand, within PFLU_RS01630 at 364.192 kb on - strand, within PFLU_RS01630 at 364.192 kb on - strand, within PFLU_RS01630 at 364.192 kb on - strand, within PFLU_RS01630 at 364.193 kb on + strand, within PFLU_RS01630 at 364.194 kb on - strand, within PFLU_RS01630 at 364.194 kb on - strand, within PFLU_RS01630 at 364.194 kb on - strand, within PFLU_RS01630 at 364.194 kb on - strand, within PFLU_RS01630 at 364.194 kb on - strand, within PFLU_RS01630 at 364.194 kb on - strand, within PFLU_RS01630 at 364.194 kb on - strand, within PFLU_RS01630 at 364.235 kb on + strand, within PFLU_RS01630 at 364.329 kb on + strand, within PFLU_RS01630 at 364.379 kb on + strand, within PFLU_RS01630 at 364.380 kb on - strand, within PFLU_RS01630 at 364.380 kb on - strand, within PFLU_RS01630 at 364.395 kb on + strand, within PFLU_RS01630 at 364.395 kb on + strand, within PFLU_RS01630 at 364.395 kb on + strand, within PFLU_RS01630 at 364.395 kb on + strand, within PFLU_RS01630 at 364.500 kb on + strand at 364.501 kb on - strand at 364.506 kb on + strand at 364.507 kb on - strand at 364.573 kb on + strand at 364.573 kb on + strand at 364.573 kb on + strand at 364.573 kb on + strand at 364.574 kb on - strand at 364.574 kb on - strand at 364.574 kb on - strand at 364.574 kb on - strand at 364.574 kb on - strand at 364.574 kb on - strand at 364.577 kb on + strand at 364.577 kb on + strand at 364.577 kb on + strand at 364.578 kb on - strand at 364.578 kb on - strand at 364.610 kb on + strand at 364.610 kb on + strand at 364.611 kb on - strand at 364.611 kb on - strand at 364.730 kb on - strand, within PFLU_RS01635 at 364.777 kb on + strand, within PFLU_RS01635 at 364.777 kb on + strand, within PFLU_RS01635 at 364.778 kb on - strand, within PFLU_RS01635 at 364.778 kb on - strand, within PFLU_RS01635 at 364.783 kb on + strand, within PFLU_RS01635 at 364.783 kb on + strand, within PFLU_RS01635 at 364.784 kb on - strand, within PFLU_RS01635 at 364.793 kb on + strand, within PFLU_RS01635 at 364.793 kb on + strand, within PFLU_RS01635 at 364.793 kb on + strand, within PFLU_RS01635 at 364.793 kb on + strand, within PFLU_RS01635 at 364.794 kb on - strand, within PFLU_RS01635 at 364.825 kb on + strand, within PFLU_RS01635 at 364.825 kb on + strand, within PFLU_RS01635 at 364.825 kb on + strand, within PFLU_RS01635 at 364.825 kb on + strand, within PFLU_RS01635 at 364.825 kb on + strand, within PFLU_RS01635 at 364.826 kb on - strand, within PFLU_RS01635 at 364.826 kb on - strand, within PFLU_RS01635 at 364.826 kb on - strand, within PFLU_RS01635 at 364.826 kb on - strand, within PFLU_RS01635 at 364.826 kb on - strand, within PFLU_RS01635 at 365.045 kb on - strand, within PFLU_RS01635 at 365.089 kb on + strand, within PFLU_RS01635 at 365.089 kb on + strand, within PFLU_RS01635 at 365.089 kb on + strand, within PFLU_RS01635 at 365.089 kb on + strand, within PFLU_RS01635 at 365.089 kb on + strand, within PFLU_RS01635 at 365.096 kb on - strand, within PFLU_RS01635 at 365.111 kb on + strand, within PFLU_RS01635 at 365.111 kb on + strand, within PFLU_RS01635 at 365.111 kb on + strand, within PFLU_RS01635 at 365.111 kb on + strand, within PFLU_RS01635 at 365.112 kb on - strand, within PFLU_RS01635 at 365.112 kb on - strand, within PFLU_RS01635 at 365.112 kb on - strand, within PFLU_RS01635 at 365.112 kb on - strand, within PFLU_RS01635 at 365.112 kb on - strand, within PFLU_RS01635 at 365.112 kb on - strand, within PFLU_RS01635 at 365.115 kb on - strand, within PFLU_RS01635 at 365.115 kb on - strand, within PFLU_RS01635 at 365.115 kb on - strand, within PFLU_RS01635 at 365.176 kb on + strand, within PFLU_RS01635 at 365.176 kb on + strand, within PFLU_RS01635 at 365.176 kb on + strand, within PFLU_RS01635 at 365.176 kb on + strand, within PFLU_RS01635 at 365.176 kb on + strand, within PFLU_RS01635 at 365.177 kb on - strand, within PFLU_RS01635 at 365.177 kb on - strand, within PFLU_RS01635 at 365.177 kb on - strand, within PFLU_RS01635 at 365.177 kb on - strand, within PFLU_RS01635 at 365.302 kb on + strand, within PFLU_RS01635 at 365.302 kb on + strand, within PFLU_RS01635 at 365.302 kb on + strand, within PFLU_RS01635 at 365.302 kb on + strand, within PFLU_RS01635 at 365.302 kb on + strand, within PFLU_RS01635 at 365.302 kb on + strand, within PFLU_RS01635 at 365.302 kb on + strand, within PFLU_RS01635 at 365.302 kb on + strand, within PFLU_RS01635 at 365.303 kb on - strand, within PFLU_RS01635 at 365.303 kb on - strand, within PFLU_RS01635 at 365.303 kb on - strand, within PFLU_RS01635 at 365.303 kb on - strand, within PFLU_RS01635 at 365.303 kb on - strand, within PFLU_RS01635 at 365.303 kb on - strand, within PFLU_RS01635 at 365.306 kb on + strand, within PFLU_RS01635 at 365.306 kb on + strand, within PFLU_RS01635 at 365.307 kb on - strand, within PFLU_RS01635 at 365.307 kb on - strand, within PFLU_RS01635 at 365.307 kb on - strand, within PFLU_RS01635 at 365.307 kb on - strand, within PFLU_RS01635 at 365.307 kb on - strand, within PFLU_RS01635 at 365.373 kb on - strand, within PFLU_RS01635 at 365.396 kb on + strand, within PFLU_RS01635 at 365.396 kb on + strand, within PFLU_RS01635 at 365.396 kb on + strand, within PFLU_RS01635 at 365.397 kb on - strand, within PFLU_RS01635 at 365.397 kb on - strand, within PFLU_RS01635 at 365.397 kb on - strand, within PFLU_RS01635 at 365.397 kb on - strand, within PFLU_RS01635 at 365.397 kb on - strand, within PFLU_RS01635 at 365.397 kb on - strand, within PFLU_RS01635 at 365.420 kb on + strand, within PFLU_RS01635 at 365.421 kb on - strand, within PFLU_RS01635 at 365.421 kb on - strand, within PFLU_RS01635 at 365.493 kb on + strand, within PFLU_RS01635 at 365.493 kb on + strand, within PFLU_RS01635
Per-strain Table
Position Strand Gene LocusTag Fraction p-Coumaric (C) 5 mM remove 362,847 + -0.5 362,847 + -2.3 362,848 - -1.5 362,848 - +0.6 362,848 - -2.8 362,848 - -0.4 362,855 + +0.6 362,855 + +0.1 362,855 + -1.6 362,855 + +1.6 362,884 - +0.1 362,884 - -1.4 362,884 - -1.3 362,884 - -2.1 362,884 - -1.9 362,884 - -2.2 362,895 + +1.1 362,895 + -0.8 362,896 - -0.5 362,896 - -1.8 362,896 - -2.1 362,896 - -0.5 363,033 + PFLU_RS01625 0.15 +1.6 363,059 + PFLU_RS01625 0.19 -0.5 363,110 + PFLU_RS01625 0.25 +1.6 363,110 + PFLU_RS01625 0.25 -2.0 363,111 - PFLU_RS01625 0.25 +0.1 363,140 + PFLU_RS01625 0.29 -2.2 363,140 + PFLU_RS01625 0.29 +2.6 363,377 + PFLU_RS01625 0.60 +1.6 363,611 + -2.4 363,612 - -2.6 363,630 + -0.2 363,630 + -0.5 363,630 + +1.1 363,630 + -0.2 363,631 - -1.4 363,631 - +1.6 363,631 - -1.8 363,654 + +0.1 363,654 + -0.8 363,654 + -0.2 363,654 + +0.3 363,654 + -1.8 363,654 + +1.1 363,654 + +0.6 363,654 + -0.7 363,654 + -1.9 363,654 + -1.4 363,655 - -1.6 363,655 - -1.6 363,655 - -1.2 363,655 - -1.5 363,671 + +0.6 363,785 + +2.5 363,785 + -0.5 363,785 + +1.3 363,785 + +1.1 363,785 + +1.9 363,786 - -0.2 363,786 - -0.8 363,870 + PFLU_RS01630 0.15 +2.6 363,870 + PFLU_RS01630 0.15 -0.5 363,870 + PFLU_RS01630 0.15 +0.9 363,870 + PFLU_RS01630 0.15 +1.1 363,972 + PFLU_RS01630 0.29 -0.6 363,973 - PFLU_RS01630 0.29 -0.4 363,973 - PFLU_RS01630 0.29 +0.6 364,008 + PFLU_RS01630 0.34 -0.5 364,009 - PFLU_RS01630 0.34 +0.9 364,009 - PFLU_RS01630 0.34 +0.5 364,136 + PFLU_RS01630 0.51 +2.3 364,136 + PFLU_RS01630 0.51 -1.8 364,136 + PFLU_RS01630 0.51 -1.5 364,137 - PFLU_RS01630 0.51 +0.7 364,137 - PFLU_RS01630 0.51 +0.9 364,137 - PFLU_RS01630 0.51 +0.8 364,137 - PFLU_RS01630 0.51 +0.4 364,191 + PFLU_RS01630 0.58 +2.3 364,191 + PFLU_RS01630 0.58 +2.1 364,191 + PFLU_RS01630 0.58 -0.6 364,192 - PFLU_RS01630 0.58 +0.4 364,192 - PFLU_RS01630 0.58 -1.8 364,192 - PFLU_RS01630 0.58 +1.0 364,192 - PFLU_RS01630 0.58 +0.3 364,192 - PFLU_RS01630 0.58 +0.8 364,193 + PFLU_RS01630 0.58 +1.3 364,194 - PFLU_RS01630 0.58 -0.9 364,194 - PFLU_RS01630 0.58 +0.9 364,194 - PFLU_RS01630 0.58 +0.9 364,194 - PFLU_RS01630 0.58 +0.3 364,194 - PFLU_RS01630 0.58 -0.8 364,194 - PFLU_RS01630 0.58 -0.5 364,194 - PFLU_RS01630 0.58 +3.2 364,235 + PFLU_RS01630 0.64 -2.8 364,329 + PFLU_RS01630 0.76 -1.2 364,379 + PFLU_RS01630 0.83 -0.6 364,380 - PFLU_RS01630 0.83 -0.5 364,380 - PFLU_RS01630 0.83 -2.7 364,395 + PFLU_RS01630 0.85 +0.4 364,395 + PFLU_RS01630 0.85 -0.8 364,395 + PFLU_RS01630 0.85 +1.0 364,395 + PFLU_RS01630 0.85 -1.5 364,500 + +0.2 364,501 - -2.6 364,506 + +1.2 364,507 - -1.7 364,573 + -1.9 364,573 + -0.8 364,573 + -0.8 364,573 + +0.1 364,574 - +0.3 364,574 - +2.0 364,574 - -0.2 364,574 - +0.6 364,574 - -2.2 364,574 - -0.5 364,577 + -0.6 364,577 + -1.8 364,577 + +1.1 364,578 - -0.5 364,578 - +1.8 364,610 + +1.4 364,610 + +1.9 364,611 - +2.0 364,611 - -1.2 364,730 - PFLU_RS01635 0.14 -0.4 364,777 + PFLU_RS01635 0.17 -0.0 364,777 + PFLU_RS01635 0.17 +3.4 364,778 - PFLU_RS01635 0.17 -0.9 364,778 - PFLU_RS01635 0.17 +0.3 364,783 + PFLU_RS01635 0.17 -0.6 364,783 + PFLU_RS01635 0.17 +1.2 364,784 - PFLU_RS01635 0.17 +0.5 364,793 + PFLU_RS01635 0.18 -0.4 364,793 + PFLU_RS01635 0.18 +0.5 364,793 + PFLU_RS01635 0.18 -2.3 364,793 + PFLU_RS01635 0.18 -0.7 364,794 - PFLU_RS01635 0.18 +0.2 364,825 + PFLU_RS01635 0.20 -1.1 364,825 + PFLU_RS01635 0.20 +1.7 364,825 + PFLU_RS01635 0.20 -1.8 364,825 + PFLU_RS01635 0.20 +0.6 364,825 + PFLU_RS01635 0.20 +1.4 364,826 - PFLU_RS01635 0.20 +1.3 364,826 - PFLU_RS01635 0.20 +1.2 364,826 - PFLU_RS01635 0.20 +0.1 364,826 - PFLU_RS01635 0.20 +0.3 364,826 - PFLU_RS01635 0.20 -0.1 365,045 - PFLU_RS01635 0.34 +0.3 365,089 + PFLU_RS01635 0.37 +2.3 365,089 + PFLU_RS01635 0.37 -0.4 365,089 + PFLU_RS01635 0.37 -0.5 365,089 + PFLU_RS01635 0.37 -0.2 365,089 + PFLU_RS01635 0.37 -0.4 365,096 - PFLU_RS01635 0.37 +0.8 365,111 + PFLU_RS01635 0.38 -1.7 365,111 + PFLU_RS01635 0.38 -0.9 365,111 + PFLU_RS01635 0.38 +1.3 365,111 + PFLU_RS01635 0.38 +1.0 365,112 - PFLU_RS01635 0.38 -2.2 365,112 - PFLU_RS01635 0.38 +0.4 365,112 - PFLU_RS01635 0.38 +1.3 365,112 - PFLU_RS01635 0.38 +1.6 365,112 - PFLU_RS01635 0.38 +0.5 365,112 - PFLU_RS01635 0.38 -1.8 365,115 - PFLU_RS01635 0.39 -0.9 365,115 - PFLU_RS01635 0.39 -1.2 365,115 - PFLU_RS01635 0.39 +1.1 365,176 + PFLU_RS01635 0.42 +0.8 365,176 + PFLU_RS01635 0.42 +0.3 365,176 + PFLU_RS01635 0.42 +2.1 365,176 + PFLU_RS01635 0.42 +1.9 365,176 + PFLU_RS01635 0.42 +0.1 365,177 - PFLU_RS01635 0.42 -0.7 365,177 - PFLU_RS01635 0.42 -0.6 365,177 - PFLU_RS01635 0.42 -1.4 365,177 - PFLU_RS01635 0.42 +0.2 365,302 + PFLU_RS01635 0.50 +0.5 365,302 + PFLU_RS01635 0.50 +0.1 365,302 + PFLU_RS01635 0.50 -0.1 365,302 + PFLU_RS01635 0.50 -0.5 365,302 + PFLU_RS01635 0.50 +1.2 365,302 + PFLU_RS01635 0.50 -0.8 365,302 + PFLU_RS01635 0.50 +0.9 365,302 + PFLU_RS01635 0.50 -0.2 365,303 - PFLU_RS01635 0.51 -0.1 365,303 - PFLU_RS01635 0.51 -2.7 365,303 - PFLU_RS01635 0.51 -0.5 365,303 - PFLU_RS01635 0.51 +0.3 365,303 - PFLU_RS01635 0.51 +0.4 365,303 - PFLU_RS01635 0.51 -0.3 365,306 + PFLU_RS01635 0.51 +1.0 365,306 + PFLU_RS01635 0.51 +1.9 365,307 - PFLU_RS01635 0.51 +1.4 365,307 - PFLU_RS01635 0.51 +1.9 365,307 - PFLU_RS01635 0.51 -1.3 365,307 - PFLU_RS01635 0.51 -1.4 365,307 - PFLU_RS01635 0.51 -2.5 365,373 - PFLU_RS01635 0.55 +0.9 365,396 + PFLU_RS01635 0.56 +0.2 365,396 + PFLU_RS01635 0.56 +0.3 365,396 + PFLU_RS01635 0.56 -0.1 365,397 - PFLU_RS01635 0.57 +0.8 365,397 - PFLU_RS01635 0.57 +2.6 365,397 - PFLU_RS01635 0.57 -0.4 365,397 - PFLU_RS01635 0.57 -0.0 365,397 - PFLU_RS01635 0.57 +2.6 365,397 - PFLU_RS01635 0.57 +0.5 365,420 + PFLU_RS01635 0.58 -1.2 365,421 - PFLU_RS01635 0.58 +0.4 365,421 - PFLU_RS01635 0.58 +0.5 365,493 + PFLU_RS01635 0.63 -2.1 365,493 + PFLU_RS01635 0.63 -1.5
Or see this region's nucleotide sequence