Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2878

Experiment: Cobalt chloride 0.07 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2875 and Psest_2876 are separated by 121 nucleotidesPsest_2876 and Psest_2877 are separated by 78 nucleotidesPsest_2877 and Psest_2878 are separated by 86 nucleotidesPsest_2878 and Psest_2879 overlap by 4 nucleotidesPsest_2879 and Psest_2880 overlap by 8 nucleotides Psest_2875: Psest_2875 - DNA mismatch repair protein MutS, at 3,066,249 to 3,068,828 _2875 Psest_2876: Psest_2876 - Ferredoxin, at 3,068,950 to 3,069,273 _2876 Psest_2877: Psest_2877 - Uncharacterized protein conserved in bacteria, at 3,069,352 to 3,069,543 _2877 Psest_2878: Psest_2878 - conserved hypothetical protein, at 3,069,630 to 3,070,622 _2878 Psest_2879: Psest_2879 - Predicted deacetylase, at 3,070,619 to 3,071,380 _2879 Psest_2880: Psest_2880 - Glycosyltransferase, at 3,071,373 to 3,072,488 _2880 Position (kb) 3069 3070 3071Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3068.803 kb on + strandat 3068.805 kb on + strandat 3068.805 kb on + strandat 3068.805 kb on + strandat 3068.805 kb on + strandat 3068.805 kb on + strandat 3068.805 kb on + strandat 3068.805 kb on + strandat 3068.805 kb on + strandat 3068.806 kb on - strandat 3068.806 kb on - strandat 3068.806 kb on - strandat 3068.806 kb on - strandat 3068.806 kb on - strandat 3068.806 kb on - strandat 3068.806 kb on - strandat 3068.806 kb on - strandat 3068.806 kb on - strandat 3068.806 kb on - strandat 3068.846 kb on + strandat 3069.274 kb on + strandat 3069.274 kb on + strandat 3069.274 kb on + strandat 3069.572 kb on + strandat 3069.572 kb on + strandat 3069.572 kb on + strandat 3069.572 kb on + strandat 3069.572 kb on + strandat 3069.572 kb on + strandat 3069.572 kb on + strandat 3069.572 kb on + strandat 3069.572 kb on + strandat 3069.573 kb on - strandat 3069.573 kb on - strandat 3069.573 kb on - strandat 3069.573 kb on - strandat 3069.573 kb on - strandat 3069.573 kb on - strandat 3069.573 kb on - strandat 3069.573 kb on - strandat 3069.712 kb on + strandat 3069.713 kb on - strandat 3069.713 kb on - strandat 3069.713 kb on - strandat 3069.718 kb on + strandat 3069.718 kb on + strandat 3069.718 kb on + strandat 3069.718 kb on + strandat 3069.718 kb on + strandat 3069.718 kb on + strandat 3069.718 kb on + strandat 3069.718 kb on + strandat 3069.718 kb on + strandat 3069.718 kb on + strandat 3069.718 kb on + strandat 3069.718 kb on + strandat 3069.718 kb on + strandat 3069.718 kb on + strandat 3069.718 kb on + strandat 3069.719 kb on - strandat 3069.719 kb on - strandat 3069.719 kb on - strandat 3069.719 kb on - strandat 3069.719 kb on - strandat 3069.719 kb on - strandat 3069.719 kb on - strandat 3069.719 kb on - strandat 3069.719 kb on - strandat 3069.719 kb on - strandat 3069.719 kb on - strandat 3069.719 kb on - strandat 3069.719 kb on - strandat 3069.719 kb on - strandat 3069.719 kb on - strandat 3069.721 kb on + strandat 3069.721 kb on + strandat 3069.721 kb on + strandat 3069.722 kb on - strandat 3069.722 kb on - strandat 3069.722 kb on - strandat 3069.722 kb on - strandat 3069.722 kb on - strandat 3069.722 kb on - strandat 3069.759 kb on - strand, within Psest_2878at 3069.903 kb on + strand, within Psest_2878at 3070.032 kb on + strand, within Psest_2878at 3070.033 kb on - strand, within Psest_2878at 3070.222 kb on + strand, within Psest_2878at 3070.222 kb on + strand, within Psest_2878at 3070.222 kb on + strand, within Psest_2878at 3070.222 kb on + strand, within Psest_2878at 3070.222 kb on + strand, within Psest_2878at 3070.222 kb on + strand, within Psest_2878at 3070.222 kb on + strand, within Psest_2878at 3070.223 kb on - strand, within Psest_2878at 3070.223 kb on - strand, within Psest_2878at 3070.223 kb on - strand, within Psest_2878at 3070.223 kb on - strand, within Psest_2878at 3070.223 kb on - strand, within Psest_2878at 3070.223 kb on - strand, within Psest_2878at 3070.223 kb on - strand, within Psest_2878at 3070.223 kb on - strand, within Psest_2878at 3070.223 kb on - strand, within Psest_2878at 3070.223 kb on - strand, within Psest_2878at 3070.223 kb on - strand, within Psest_2878at 3070.223 kb on - strand, within Psest_2878at 3070.285 kb on + strand, within Psest_2878at 3070.285 kb on + strand, within Psest_2878at 3070.286 kb on - strand, within Psest_2878at 3070.286 kb on - strand, within Psest_2878at 3070.286 kb on - strand, within Psest_2878at 3070.501 kb on - strand, within Psest_2878at 3070.720 kb on - strand, within Psest_2879at 3070.900 kb on - strand, within Psest_2879at 3070.923 kb on + strand, within Psest_2879at 3070.923 kb on + strand, within Psest_2879at 3070.923 kb on + strand, within Psest_2879at 3070.924 kb on - strand, within Psest_2879at 3070.924 kb on - strand, within Psest_2879at 3071.073 kb on + strand, within Psest_2879at 3071.073 kb on + strand, within Psest_2879at 3071.094 kb on + strand, within Psest_2879at 3071.094 kb on + strand, within Psest_2879at 3071.094 kb on + strand, within Psest_2879at 3071.094 kb on + strand, within Psest_2879at 3071.094 kb on + strand, within Psest_2879at 3071.095 kb on - strand, within Psest_2879at 3071.095 kb on - strand, within Psest_2879at 3071.095 kb on - strand, within Psest_2879at 3071.154 kb on + strand, within Psest_2879at 3071.155 kb on - strand, within Psest_2879at 3071.382 kb on + strandat 3071.383 kb on - strandat 3071.383 kb on - strandat 3071.383 kb on - strandat 3071.535 kb on - strand, within Psest_2880

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.07 mM
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3,068,803 + -0.9
3,068,805 + +0.2
3,068,805 + -0.8
3,068,805 + -0.6
3,068,805 + -1.1
3,068,805 + -1.4
3,068,805 + -0.7
3,068,805 + -1.5
3,068,805 + -2.1
3,068,806 - +0.4
3,068,806 - -0.0
3,068,806 - +0.5
3,068,806 - +1.2
3,068,806 - -0.2
3,068,806 - -0.0
3,068,806 - -1.7
3,068,806 - +0.5
3,068,806 - +0.8
3,068,806 - -1.4
3,068,846 + -2.2
3,069,274 + -1.4
3,069,274 + +0.7
3,069,274 + +1.0
3,069,572 + -1.6
3,069,572 + +0.1
3,069,572 + +2.4
3,069,572 + -0.1
3,069,572 + +1.3
3,069,572 + -0.0
3,069,572 + +1.3
3,069,572 + +0.4
3,069,572 + -0.8
3,069,573 - -0.5
3,069,573 - +0.8
3,069,573 - +1.4
3,069,573 - -1.0
3,069,573 - -0.4
3,069,573 - -0.1
3,069,573 - +1.2
3,069,573 - -0.5
3,069,712 + -1.3
3,069,713 - -0.0
3,069,713 - +1.2
3,069,713 - +0.6
3,069,718 + +0.7
3,069,718 + +0.3
3,069,718 + -0.8
3,069,718 + -0.1
3,069,718 + +1.6
3,069,718 + +2.1
3,069,718 + +0.5
3,069,718 + -0.6
3,069,718 + -0.7
3,069,718 + -0.1
3,069,718 + +3.2
3,069,718 + -0.0
3,069,718 + -0.4
3,069,718 + +1.5
3,069,718 + -0.7
3,069,719 - -0.1
3,069,719 - -1.4
3,069,719 - +0.8
3,069,719 - -0.2
3,069,719 - +0.6
3,069,719 - -1.1
3,069,719 - +1.4
3,069,719 - -0.9
3,069,719 - +0.0
3,069,719 - -0.8
3,069,719 - +0.8
3,069,719 - +0.4
3,069,719 - -0.3
3,069,719 - +2.0
3,069,719 - +1.0
3,069,721 + -0.4
3,069,721 + +0.6
3,069,721 + +0.2
3,069,722 - +0.8
3,069,722 - -1.1
3,069,722 - -0.4
3,069,722 - +1.8
3,069,722 - -0.1
3,069,722 - -2.1
3,069,759 - Psest_2878 0.13 -1.3
3,069,903 + Psest_2878 0.27 +1.2
3,070,032 + Psest_2878 0.40 -2.1
3,070,033 - Psest_2878 0.41 +0.3
3,070,222 + Psest_2878 0.60 -0.9
3,070,222 + Psest_2878 0.60 -1.5
3,070,222 + Psest_2878 0.60 -2.1
3,070,222 + Psest_2878 0.60 -0.5
3,070,222 + Psest_2878 0.60 +1.2
3,070,222 + Psest_2878 0.60 +1.0
3,070,222 + Psest_2878 0.60 -2.4
3,070,223 - Psest_2878 0.60 -1.3
3,070,223 - Psest_2878 0.60 -0.0
3,070,223 - Psest_2878 0.60 +0.8
3,070,223 - Psest_2878 0.60 -1.6
3,070,223 - Psest_2878 0.60 -0.5
3,070,223 - Psest_2878 0.60 -1.3
3,070,223 - Psest_2878 0.60 +1.4
3,070,223 - Psest_2878 0.60 +0.7
3,070,223 - Psest_2878 0.60 +1.7
3,070,223 - Psest_2878 0.60 -0.4
3,070,223 - Psest_2878 0.60 -2.5
3,070,223 - Psest_2878 0.60 +0.2
3,070,285 + Psest_2878 0.66 -1.6
3,070,285 + Psest_2878 0.66 -1.3
3,070,286 - Psest_2878 0.66 -1.1
3,070,286 - Psest_2878 0.66 +0.3
3,070,286 - Psest_2878 0.66 -1.4
3,070,501 - Psest_2878 0.88 -1.1
3,070,720 - Psest_2879 0.13 -0.1
3,070,900 - Psest_2879 0.37 +0.6
3,070,923 + Psest_2879 0.40 +2.1
3,070,923 + Psest_2879 0.40 -1.5
3,070,923 + Psest_2879 0.40 +0.0
3,070,924 - Psest_2879 0.40 -2.1
3,070,924 - Psest_2879 0.40 +0.7
3,071,073 + Psest_2879 0.60 -0.8
3,071,073 + Psest_2879 0.60 -1.1
3,071,094 + Psest_2879 0.62 -2.0
3,071,094 + Psest_2879 0.62 +2.4
3,071,094 + Psest_2879 0.62 +1.2
3,071,094 + Psest_2879 0.62 -0.5
3,071,094 + Psest_2879 0.62 -2.3
3,071,095 - Psest_2879 0.62 +0.5
3,071,095 - Psest_2879 0.62 -1.2
3,071,095 - Psest_2879 0.62 +0.6
3,071,154 + Psest_2879 0.70 -0.1
3,071,155 - Psest_2879 0.70 -1.6
3,071,382 + +0.9
3,071,383 - -1.5
3,071,383 - -1.9
3,071,383 - -1.5
3,071,535 - Psest_2880 0.15 +0.8

Or see this region's nucleotide sequence