Strain Fitness in Sinorhizobium meliloti 1021 around SMc03922

Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
3,066,767	+		SMc04460	0.62	-0.3
3,066,768	-		SMc04460	0.62	-0.3
3,066,835	+		SMc04460	0.64	-0.4
3,066,943	-		SMc04460	0.69	+0.3
3,066,944	+		SMc04460	0.69	-1.4
3,067,062	+		SMc04460	0.74	+1.5
3,067,062	+		SMc04460	0.74	+0.8
3,067,062	+		SMc04460	0.74	-0.0
3,067,167	+		SMc04460	0.78	+0.8
3,067,168	-		SMc04460	0.78	+0.2
3,067,521	+				+1.5
3,067,563	+				-0.0
3,067,564	-				+0.2
3,067,564	-				-0.2
3,067,564	-				-0.5
3,067,684	-				+0.2
3,067,844	+				-0.4
3,067,844	+				+0.5
3,067,844	+				-0.5
3,067,844	+				-0.0
3,067,844	+				-0.3
3,067,844	+				+0.5
3,067,844	+				-0.3
3,067,844	+				-0.1
3,067,988	+		SMc03922	0.13	-0.8
3,068,033	+		SMc03922	0.15	-0.7
3,068,034	-		SMc03922	0.15	-0.1
3,068,069	+		SMc03922	0.16	-0.0
3,068,069	+		SMc03922	0.16	-1.1
3,068,069	+		SMc03922	0.16	+0.3
3,068,069	+		SMc03922	0.16	+0.5
3,068,069	+		SMc03922	0.16	+0.3
3,068,069	+		SMc03922	0.16	-1.1
3,068,070	-		SMc03922	0.16	+0.8
3,068,070	-		SMc03922	0.16	-0.2
3,068,070	-		SMc03922	0.16	+1.0
3,068,070	-		SMc03922	0.16	+0.2
3,068,072	+		SMc03922	0.16	-0.7
3,068,073	-		SMc03922	0.16	-0.1
3,068,073	-		SMc03922	0.16	+0.1
3,068,073	-		SMc03922	0.16	+0.6
3,068,074	+		SMc03922	0.17	-0.7
3,068,075	-		SMc03922	0.17	-1.4
3,068,257	+		SMc03922	0.25	-1.2
3,068,293	+		SMc03922	0.26	-1.3
3,068,303	-		SMc03922	0.27	-0.8
3,068,306	+		SMc03922	0.27	-3.8
3,068,306	+		SMc03922	0.27	-0.8
3,068,306	+		SMc03922	0.27	-1.3
3,068,490	-		SMc03922	0.35	-0.5
3,068,585	-		SMc03922	0.40	+0.9
3,068,625	-		SMc03922	0.41	+0.7
3,068,625	-		SMc03922	0.41	+1.6
3,068,630	+		SMc03922	0.42	-2.0
3,068,631	-		SMc03922	0.42	-0.2
3,068,648	+		SMc03922	0.42	-0.0
3,068,648	+		SMc03922	0.42	-1.2
3,068,819	+		SMc03922	0.50	-2.3
3,068,984	+		SMc03922	0.58	-1.7
3,068,985	-		SMc03922	0.58	-0.7
3,069,089	+		SMc03922	0.62	-2.0
3,069,090	-		SMc03922	0.62	-0.1
3,069,090	-		SMc03922	0.62	-0.2
3,069,224	+		SMc03922	0.69	+0.5
3,069,224	+		SMc03922	0.69	-4.1
3,069,225	-		SMc03922	0.69	+0.2
3,069,225	-		SMc03922	0.69	-0.2
3,069,225	-		SMc03922	0.69	+0.5
3,069,287	+		SMc03922	0.71	-1.4
3,069,408	-		SMc03922	0.77	-0.1
3,069,408	-		SMc03922	0.77	-0.6
3,069,408	-		SMc03922	0.77	-0.1
3,069,410	+		SMc03922	0.77	-2.6
3,069,411	-		SMc03922	0.77	-0.2
3,069,573	-		SMc03922	0.84	-0.4
3,069,573	-		SMc03922	0.84	-0.1
3,069,573	-		SMc03922	0.84	-0.1
3,069,738	-				+1.3
3,069,738	-				+0.8
3,069,738	-				-0.1
3,069,801	-				-0.1
3,069,917	+				+0.1
3,070,010	-				-0.0
3,070,030	+				+1.2
3,070,030	+				+1.0
3,070,048	-				+0.1
3,070,048	-				-1.5
3,070,078	+				-0.3
3,070,078	+				-1.5
3,070,078	+				-0.1
3,070,079	-				+0.1
3,070,148	-				-0.7
3,070,234	+		SMc03923	0.16	-0.8
3,070,235	-		SMc03923	0.16	+0.6
3,070,296	+		SMc03923	0.21	-0.0
3,070,414	+		SMc03923	0.30	+0.1
3,070,415	-		SMc03923	0.30	+1.5
3,070,415	-		SMc03923	0.30	+0.5
3,070,415	-		SMc03923	0.30	-0.1
3,070,444	+		SMc03923	0.33	-0.3
3,070,457	-		SMc03923	0.34	-0.2
3,070,657	+		SMc03923	0.49	+0.6
3,070,657	+		SMc03923	0.49	+0.1
3,070,658	-		SMc03923	0.49	+0.1
3,070,750	+		SMc03923	0.57	-0.1
3,070,750	+		SMc03923	0.57	-0.9
3,070,750	+		SMc03923	0.57	-0.5
3,070,750	+		SMc03923	0.57	+0.3
3,070,751	-		SMc03923	0.57	-0.4
3,070,751	-		SMc03923	0.57	-0.1
3,070,751	-		SMc03923	0.57	+1.0
3,070,752	+		SMc03923	0.57	-0.3
3,070,828	+		SMc03923	0.63	-0.7
3,070,829	-		SMc03923	0.63	+0.9
3,070,829	-		SMc03923	0.63	-0.1
3,070,829	-		SMc03923	0.63	-0.1
3,070,909	+		SMc03923	0.69	+0.1
3,070,909	+		SMc03923	0.69	-1.5
3,070,910	-		SMc03923	0.69	+0.4
3,070,910	-		SMc03923	0.69	+0.2