Strain Fitness in Sinorhizobium meliloti 1021 around SMc03063

Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03062 and SMc03063 are separated by 1 nucleotidesSMc03063 and SMc03064 are separated by 29 nucleotides SMc03062: SMc03062 - ABC transporter for D-maltose/D-trehalose/sucrose, permease component 1 (AglF) (from data), at 759,384 to 760,394 SMc03062 SMc03063: SMc03063 - ABC transporter for D-maltose/D-trehalose/sucrose, permease component 2 (AglG) (from data), at 760,396 to 761,538 SMc03063 SMc03064: SMc03064 - alpha-glucosidase, at 761,568 to 763,223 SMc03064 Position (kb) 760 761 762Strain fitness (log2 ratio) -2 -1 0 1 2at 759.589 kb on - strand, within SMc03062at 759.589 kb on - strand, within SMc03062at 759.598 kb on - strand, within SMc03062at 759.670 kb on - strand, within SMc03062at 759.806 kb on + strand, within SMc03062at 759.879 kb on + strand, within SMc03062at 759.880 kb on - strand, within SMc03062at 760.818 kb on + strand, within SMc03063at 760.855 kb on + strand, within SMc03063at 760.855 kb on + strand, within SMc03063at 760.856 kb on - strand, within SMc03063at 760.856 kb on - strand, within SMc03063at 760.856 kb on - strand, within SMc03063at 760.964 kb on - strand, within SMc03063at 761.071 kb on + strand, within SMc03063at 761.071 kb on + strand, within SMc03063at 761.072 kb on - strand, within SMc03063at 761.072 kb on - strand, within SMc03063at 761.072 kb on - strand, within SMc03063at 761.073 kb on + strand, within SMc03063at 761.073 kb on + strand, within SMc03063at 761.073 kb on + strand, within SMc03063at 761.073 kb on + strand, within SMc03063at 761.074 kb on - strand, within SMc03063at 761.074 kb on - strand, within SMc03063at 761.113 kb on + strand, within SMc03063at 761.113 kb on + strand, within SMc03063at 761.113 kb on + strand, within SMc03063at 761.113 kb on + strand, within SMc03063at 761.113 kb on + strand, within SMc03063at 761.113 kb on + strand, within SMc03063at 761.113 kb on + strand, within SMc03063at 761.113 kb on + strand, within SMc03063at 761.114 kb on - strand, within SMc03063at 761.114 kb on - strand, within SMc03063at 761.114 kb on - strand, within SMc03063at 761.114 kb on - strand, within SMc03063at 761.114 kb on - strand, within SMc03063at 761.114 kb on - strand, within SMc03063at 761.114 kb on - strand, within SMc03063at 761.114 kb on - strand, within SMc03063at 761.114 kb on - strand, within SMc03063at 761.115 kb on + strand, within SMc03063at 761.115 kb on + strand, within SMc03063at 761.115 kb on + strand, within SMc03063at 761.164 kb on + strand, within SMc03063at 761.165 kb on - strand, within SMc03063at 761.165 kb on - strand, within SMc03063at 761.165 kb on - strand, within SMc03063at 761.179 kb on + strand, within SMc03063at 761.180 kb on - strand, within SMc03063at 761.637 kb on + strandat 761.637 kb on + strandat 761.638 kb on - strandat 761.638 kb on - strandat 761.805 kb on + strandat 761.805 kb on + strand, within SMc03064at 761.806 kb on - strand, within SMc03064at 761.806 kb on - strand, within SMc03064at 761.912 kb on + strand, within SMc03064at 761.912 kb on + strand, within SMc03064at 761.913 kb on - strand, within SMc03064at 761.979 kb on + strand, within SMc03064at 761.979 kb on + strand, within SMc03064at 761.979 kb on + strand, within SMc03064at 761.979 kb on + strand, within SMc03064at 761.979 kb on + strand, within SMc03064at 761.980 kb on - strand, within SMc03064at 762.079 kb on - strand, within SMc03064at 762.081 kb on + strand, within SMc03064at 762.081 kb on + strand, within SMc03064at 762.125 kb on + strand, within SMc03064at 762.301 kb on - strand, within SMc03064at 762.302 kb on + strand, within SMc03064at 762.303 kb on - strand, within SMc03064at 762.303 kb on - strand, within SMc03064at 762.306 kb on + strand, within SMc03064at 762.306 kb on + strand, within SMc03064at 762.307 kb on - strand, within SMc03064at 762.307 kb on - strand, within SMc03064at 762.307 kb on - strand, within SMc03064at 762.317 kb on + strandat 762.317 kb on + strand, within SMc03064at 762.317 kb on + strand, within SMc03064at 762.317 kb on + strand, within SMc03064at 762.318 kb on - strand, within SMc03064at 762.322 kb on - strand, within SMc03064at 762.450 kb on + strand, within SMc03064at 762.450 kb on + strand, within SMc03064at 762.450 kb on + strand, within SMc03064at 762.451 kb on - strand, within SMc03064

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
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759,589 - SMc03062 0.20 -0.0
759,589 - SMc03062 0.20 +1.7
759,598 - SMc03062 0.21 -1.4
759,670 - SMc03062 0.28 -0.0
759,806 + SMc03062 0.42 -0.3
759,879 + SMc03062 0.49 -0.1
759,880 - SMc03062 0.49 +0.9
760,818 + SMc03063 0.37 -0.3
760,855 + SMc03063 0.40 -0.2
760,855 + SMc03063 0.40 +0.2
760,856 - SMc03063 0.40 -0.3
760,856 - SMc03063 0.40 +0.3
760,856 - SMc03063 0.40 +1.8
760,964 - SMc03063 0.50 +0.2
761,071 + SMc03063 0.59 -1.1
761,071 + SMc03063 0.59 -0.1
761,072 - SMc03063 0.59 -1.1
761,072 - SMc03063 0.59 +0.8
761,072 - SMc03063 0.59 +0.6
761,073 + SMc03063 0.59 -0.5
761,073 + SMc03063 0.59 -1.2
761,073 + SMc03063 0.59 -2.1
761,073 + SMc03063 0.59 -0.9
761,074 - SMc03063 0.59 -0.3
761,074 - SMc03063 0.59 -0.2
761,113 + SMc03063 0.63 -0.2
761,113 + SMc03063 0.63 -0.0
761,113 + SMc03063 0.63 -0.7
761,113 + SMc03063 0.63 -0.7
761,113 + SMc03063 0.63 -0.7
761,113 + SMc03063 0.63 +0.2
761,113 + SMc03063 0.63 -0.5
761,113 + SMc03063 0.63 -0.6
761,114 - SMc03063 0.63 +0.3
761,114 - SMc03063 0.63 -0.3
761,114 - SMc03063 0.63 -0.7
761,114 - SMc03063 0.63 -0.1
761,114 - SMc03063 0.63 -0.3
761,114 - SMc03063 0.63 -0.4
761,114 - SMc03063 0.63 -1.6
761,114 - SMc03063 0.63 -0.2
761,114 - SMc03063 0.63 +0.1
761,115 + SMc03063 0.63 +0.0
761,115 + SMc03063 0.63 -0.0
761,115 + SMc03063 0.63 -1.1
761,164 + SMc03063 0.67 -0.7
761,165 - SMc03063 0.67 -0.7
761,165 - SMc03063 0.67 -1.0
761,165 - SMc03063 0.67 -0.2
761,179 + SMc03063 0.69 -0.4
761,180 - SMc03063 0.69 -0.6
761,637 + +0.5
761,637 + +0.4
761,638 - -0.3
761,638 - -0.5
761,805 + -0.6
761,805 + SMc03064 0.14 +0.2
761,806 - SMc03064 0.14 -0.2
761,806 - SMc03064 0.14 +0.4
761,912 + SMc03064 0.21 +0.0
761,912 + SMc03064 0.21 +1.3
761,913 - SMc03064 0.21 -0.1
761,979 + SMc03064 0.25 +0.0
761,979 + SMc03064 0.25 +0.0
761,979 + SMc03064 0.25 +0.1
761,979 + SMc03064 0.25 +0.1
761,979 + SMc03064 0.25 -0.1
761,980 - SMc03064 0.25 +1.7
762,079 - SMc03064 0.31 -0.0
762,081 + SMc03064 0.31 +0.3
762,081 + SMc03064 0.31 +0.2
762,125 + SMc03064 0.34 +0.3
762,301 - SMc03064 0.44 -1.7
762,302 + SMc03064 0.44 +1.2
762,303 - SMc03064 0.44 -0.3
762,303 - SMc03064 0.44 -0.1
762,306 + SMc03064 0.45 -0.0
762,306 + SMc03064 0.45 +0.2
762,307 - SMc03064 0.45 -0.2
762,307 - SMc03064 0.45 +1.5
762,307 - SMc03064 0.45 +0.0
762,317 + +0.4
762,317 + SMc03064 0.45 +0.4
762,317 + SMc03064 0.45 +0.3
762,317 + SMc03064 0.45 +0.4
762,318 - SMc03064 0.45 -0.0
762,322 - SMc03064 0.46 -0.1
762,450 + SMc03064 0.53 +0.1
762,450 + SMc03064 0.53 +0.0
762,450 + SMc03064 0.53 +0.5
762,451 - SMc03064 0.53 +0.4

Or see this region's nucleotide sequence