Strain Fitness in Sinorhizobium meliloti 1021 around SMc03062

Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03061 and SMc03062 are separated by 251 nucleotidesSMc03062 and SMc03063 are separated by 1 nucleotides SMc03061: SMc03061 - ABC transporter for D-maltose/D-trehalose/sucrose, substrate-binding component (AglE) (from data), at 757,756 to 759,132 SMc03061 SMc03062: SMc03062 - ABC transporter for D-maltose/D-trehalose/sucrose, permease component 1 (AglF) (from data), at 759,384 to 760,394 SMc03062 SMc03063: SMc03063 - ABC transporter for D-maltose/D-trehalose/sucrose, permease component 2 (AglG) (from data), at 760,396 to 761,538 SMc03063 Position (kb) 759 760 761Strain fitness (log2 ratio) -2 -1 0 1 2at 758.492 kb on - strand, within SMc03061at 758.492 kb on - strand, within SMc03061at 758.516 kb on + strand, within SMc03061at 758.517 kb on - strand, within SMc03061at 758.668 kb on + strand, within SMc03061at 758.668 kb on + strand, within SMc03061at 758.669 kb on - strand, within SMc03061at 758.669 kb on - strand, within SMc03061at 758.669 kb on - strand, within SMc03061at 758.746 kb on + strand, within SMc03061at 758.746 kb on + strand, within SMc03061at 758.746 kb on + strand, within SMc03061at 758.746 kb on + strand, within SMc03061at 758.747 kb on - strand, within SMc03061at 758.747 kb on - strand, within SMc03061at 758.782 kb on - strand, within SMc03061at 758.914 kb on + strand, within SMc03061at 758.939 kb on - strand, within SMc03061at 759.105 kb on - strandat 759.212 kb on - strandat 759.212 kb on - strandat 759.212 kb on - strandat 759.212 kb on - strandat 759.312 kb on + strandat 759.313 kb on - strandat 759.330 kb on + strandat 759.330 kb on + strandat 759.331 kb on - strandat 759.589 kb on - strand, within SMc03062at 759.589 kb on - strand, within SMc03062at 759.598 kb on - strand, within SMc03062at 759.670 kb on - strand, within SMc03062at 759.806 kb on + strand, within SMc03062at 759.879 kb on + strand, within SMc03062at 759.880 kb on - strand, within SMc03062at 760.818 kb on + strand, within SMc03063at 760.855 kb on + strand, within SMc03063at 760.855 kb on + strand, within SMc03063at 760.856 kb on - strand, within SMc03063at 760.856 kb on - strand, within SMc03063at 760.856 kb on - strand, within SMc03063at 760.964 kb on - strand, within SMc03063at 761.071 kb on + strand, within SMc03063at 761.071 kb on + strand, within SMc03063at 761.072 kb on - strand, within SMc03063at 761.072 kb on - strand, within SMc03063at 761.072 kb on - strand, within SMc03063at 761.073 kb on + strand, within SMc03063at 761.073 kb on + strand, within SMc03063at 761.073 kb on + strand, within SMc03063at 761.073 kb on + strand, within SMc03063at 761.074 kb on - strand, within SMc03063at 761.074 kb on - strand, within SMc03063at 761.113 kb on + strand, within SMc03063at 761.113 kb on + strand, within SMc03063at 761.113 kb on + strand, within SMc03063at 761.113 kb on + strand, within SMc03063at 761.113 kb on + strand, within SMc03063at 761.113 kb on + strand, within SMc03063at 761.113 kb on + strand, within SMc03063at 761.113 kb on + strand, within SMc03063at 761.114 kb on - strand, within SMc03063at 761.114 kb on - strand, within SMc03063at 761.114 kb on - strand, within SMc03063at 761.114 kb on - strand, within SMc03063at 761.114 kb on - strand, within SMc03063at 761.114 kb on - strand, within SMc03063at 761.114 kb on - strand, within SMc03063at 761.114 kb on - strand, within SMc03063at 761.114 kb on - strand, within SMc03063at 761.115 kb on + strand, within SMc03063at 761.115 kb on + strand, within SMc03063at 761.115 kb on + strand, within SMc03063at 761.164 kb on + strand, within SMc03063at 761.165 kb on - strand, within SMc03063at 761.165 kb on - strand, within SMc03063at 761.165 kb on - strand, within SMc03063at 761.179 kb on + strand, within SMc03063at 761.180 kb on - strand, within SMc03063

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
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758,492 - SMc03061 0.53 +0.3
758,492 - SMc03061 0.53 -1.2
758,516 + SMc03061 0.55 +0.3
758,517 - SMc03061 0.55 +0.4
758,668 + SMc03061 0.66 -0.5
758,668 + SMc03061 0.66 +0.5
758,669 - SMc03061 0.66 -0.7
758,669 - SMc03061 0.66 +0.7
758,669 - SMc03061 0.66 -1.2
758,746 + SMc03061 0.72 -1.0
758,746 + SMc03061 0.72 -0.3
758,746 + SMc03061 0.72 -0.2
758,746 + SMc03061 0.72 -0.5
758,747 - SMc03061 0.72 -1.2
758,747 - SMc03061 0.72 -0.4
758,782 - SMc03061 0.75 +1.7
758,914 + SMc03061 0.84 -0.0
758,939 - SMc03061 0.86 -0.2
759,105 - +0.7
759,212 - -0.0
759,212 - +0.0
759,212 - -0.4
759,212 - -0.7
759,312 + +0.2
759,313 - +0.1
759,330 + +0.6
759,330 + +0.1
759,331 - +0.4
759,589 - SMc03062 0.20 -0.0
759,589 - SMc03062 0.20 +1.7
759,598 - SMc03062 0.21 -1.4
759,670 - SMc03062 0.28 -0.0
759,806 + SMc03062 0.42 -0.3
759,879 + SMc03062 0.49 -0.1
759,880 - SMc03062 0.49 +0.9
760,818 + SMc03063 0.37 -0.3
760,855 + SMc03063 0.40 -0.2
760,855 + SMc03063 0.40 +0.2
760,856 - SMc03063 0.40 -0.3
760,856 - SMc03063 0.40 +0.3
760,856 - SMc03063 0.40 +1.8
760,964 - SMc03063 0.50 +0.2
761,071 + SMc03063 0.59 -1.1
761,071 + SMc03063 0.59 -0.1
761,072 - SMc03063 0.59 -1.1
761,072 - SMc03063 0.59 +0.8
761,072 - SMc03063 0.59 +0.6
761,073 + SMc03063 0.59 -0.5
761,073 + SMc03063 0.59 -1.2
761,073 + SMc03063 0.59 -2.1
761,073 + SMc03063 0.59 -0.9
761,074 - SMc03063 0.59 -0.3
761,074 - SMc03063 0.59 -0.2
761,113 + SMc03063 0.63 -0.2
761,113 + SMc03063 0.63 -0.0
761,113 + SMc03063 0.63 -0.7
761,113 + SMc03063 0.63 -0.7
761,113 + SMc03063 0.63 -0.7
761,113 + SMc03063 0.63 +0.2
761,113 + SMc03063 0.63 -0.5
761,113 + SMc03063 0.63 -0.6
761,114 - SMc03063 0.63 +0.3
761,114 - SMc03063 0.63 -0.3
761,114 - SMc03063 0.63 -0.7
761,114 - SMc03063 0.63 -0.1
761,114 - SMc03063 0.63 -0.3
761,114 - SMc03063 0.63 -0.4
761,114 - SMc03063 0.63 -1.6
761,114 - SMc03063 0.63 -0.2
761,114 - SMc03063 0.63 +0.1
761,115 + SMc03063 0.63 +0.0
761,115 + SMc03063 0.63 -0.0
761,115 + SMc03063 0.63 -1.1
761,164 + SMc03063 0.67 -0.7
761,165 - SMc03063 0.67 -0.7
761,165 - SMc03063 0.67 -1.0
761,165 - SMc03063 0.67 -0.2
761,179 + SMc03063 0.69 -0.4
761,180 - SMc03063 0.69 -0.6

Or see this region's nucleotide sequence