Strain Fitness in Sinorhizobium meliloti 1021 around SMc02877

Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02875 and SMc02876 overlap by 4 nucleotidesSMc02876 and SMc02877 are separated by 93 nucleotidesSMc02877 and SMc02878 overlap by 4 nucleotides SMc02875: SMc02875 - N-acetylglucosamine kinase (EC 2.7.1.59) (from data), at 231,331 to 232,215 SMc02875 SMc02876: SMc02876 - transcriptional regulator, at 232,212 to 232,976 SMc02876 SMc02877: SMc02877 - hypothetical protein, at 233,070 to 234,092 SMc02877 SMc02878: SMc02878 - N-acetylglucosamine-6-phosphate deacetylase, at 234,089 to 235,249 SMc02878 Position (kb) 233 234 235Strain fitness (log2 ratio) -1 0 1at 232.938 kb on + strandat 233.020 kb on + strandat 233.048 kb on + strandat 233.528 kb on + strand, within SMc02877at 233.528 kb on + strand, within SMc02877at 233.682 kb on + strand, within SMc02877at 233.682 kb on + strand, within SMc02877at 234.006 kb on + strandat 234.006 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
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232,938 + +0.6
233,020 + -0.1
233,048 + +0.2
233,528 + SMc02877 0.45 -1.7
233,528 + SMc02877 0.45 +0.3
233,682 + SMc02877 0.60 +0.1
233,682 + SMc02877 0.60 +0.4
234,006 + -0.1
234,006 + -0.1

Or see this region's nucleotide sequence