Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02563 and SMc02564 are separated by 85 nucleotides SMc02564 and SMc02566 are separated by 104 nucleotides SMc02566 and SMc02567 are separated by 613 nucleotides
SMc02563: SMc02563 - peptidyl-tRNA hydrolase domain-containing protein, at 54,197 to 54,631
SMc02563
SMc02564: SMc02564 - LysM domain/BON superfamily protein, at 54,717 to 55,190
SMc02564
SMc02566: SMc02566 - alkylated DNA repair protein, at 55,295 to 55,915
SMc02566
SMc02567: SMc02567 - pantothenate kinase, at 56,529 to 57,524
SMc02567
Position (kb) 55
56 Strain fitness (log2 ratio) -2
-1
0
1
2 at 54.686 kb on + strand at 54.694 kb on - strand at 54.871 kb on + strand, within SMc02564 at 55.115 kb on + strand, within SMc02564 at 55.146 kb on + strand at 55.146 kb on + strand at 55.231 kb on + strand at 55.232 kb on - strand at 55.232 kb on - strand at 55.232 kb on - strand at 55.235 kb on + strand at 55.235 kb on + strand at 55.236 kb on - strand at 55.236 kb on - strand at 55.236 kb on - strand at 55.506 kb on - strand, within SMc02566 at 55.631 kb on + strand, within SMc02566 at 55.844 kb on + strand, within SMc02566 at 55.845 kb on - strand, within SMc02566 at 55.976 kb on - strand at 55.976 kb on - strand at 55.976 kb on - strand at 55.976 kb on - strand at 55.976 kb on - strand at 56.357 kb on + strand at 56.357 kb on + strand at 56.357 kb on + strand at 56.357 kb on + strand at 56.357 kb on + strand at 56.357 kb on + strand at 56.357 kb on + strand at 56.370 kb on + strand at 56.370 kb on + strand at 56.478 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) remove 54,686 + -0.6 54,694 - +0.3 54,871 + SMc02564 0.32 -0.2 55,115 + SMc02564 0.84 -0.1 55,146 + +1.5 55,146 + +0.9 55,231 + +1.5 55,232 - -0.1 55,232 - +0.1 55,232 - +0.7 55,235 + -1.8 55,235 + -0.3 55,236 - -0.1 55,236 - +0.0 55,236 - +1.1 55,506 - SMc02566 0.34 -0.1 55,631 + SMc02566 0.54 -0.5 55,844 + SMc02566 0.88 +1.5 55,845 - SMc02566 0.89 -1.2 55,976 - -0.9 55,976 - -0.6 55,976 - +0.4 55,976 - -0.8 55,976 - +0.3 56,357 + -0.2 56,357 + +0.1 56,357 + +0.5 56,357 + +0.1 56,357 + -0.4 56,357 + +2.0 56,357 + -0.8 56,370 + -0.5 56,370 + -0.2 56,478 + +0.2
Or see this region's nucleotide sequence