Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02307 and SMc02308 overlap by 4 nucleotides SMc02308 and SMc02309 are separated by 13 nucleotides SMc02309 and SMc02310 are separated by 157 nucleotides SMc02310 and SMc02311 are separated by 97 nucleotides
SMc02307: SMc02307 - histidinol dehydrogenase, at 679,893 to 681,197
SMc02307
SMc02308: SMc02308 - hypothetical protein, at 681,194 to 681,670
SMc02308
SMc02309: SMc02309 - arsenate reductase, at 681,684 to 682,163
SMc02309
SMc02310: SMc02310 - translation initiation factor IF-1, at 682,321 to 682,539
SMc02310
SMc02311: SMc02311 - Maf-like protein, at 682,637 to 683,257
SMc02311
Position (kb) 681
682
683 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 680.976 kb on + strand, within SMc02307 at 680.977 kb on - strand, within SMc02307 at 680.977 kb on - strand, within SMc02307 at 681.051 kb on + strand, within SMc02307 at 681.052 kb on - strand, within SMc02307 at 681.052 kb on - strand, within SMc02307 at 681.454 kb on + strand, within SMc02308 at 681.467 kb on + strand, within SMc02308 at 681.467 kb on + strand, within SMc02308 at 681.488 kb on + strand, within SMc02308 at 681.488 kb on + strand, within SMc02308 at 681.808 kb on - strand, within SMc02309 at 681.808 kb on - strand, within SMc02309 at 681.808 kb on - strand, within SMc02309 at 681.808 kb on - strand, within SMc02309 at 681.808 kb on - strand, within SMc02309 at 681.808 kb on - strand, within SMc02309 at 681.808 kb on - strand, within SMc02309 at 681.808 kb on - strand, within SMc02309 at 681.930 kb on + strand, within SMc02309 at 681.930 kb on + strand, within SMc02309 at 682.013 kb on - strand, within SMc02309 at 682.015 kb on - strand, within SMc02309 at 682.015 kb on - strand, within SMc02309 at 682.253 kb on + strand at 682.537 kb on + strand at 682.537 kb on + strand at 682.622 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) remove 680,976 + SMc02307 0.83 -2.3 680,977 - SMc02307 0.83 -2.7 680,977 - SMc02307 0.83 -0.6 681,051 + SMc02307 0.89 -3.1 681,052 - SMc02307 0.89 -2.0 681,052 - SMc02307 0.89 -2.2 681,454 + SMc02308 0.55 -0.8 681,467 + SMc02308 0.57 -0.3 681,467 + SMc02308 0.57 -1.1 681,488 + SMc02308 0.62 +0.1 681,488 + SMc02308 0.62 -1.0 681,808 - SMc02309 0.26 -0.9 681,808 - SMc02309 0.26 +1.4 681,808 - SMc02309 0.26 -0.3 681,808 - SMc02309 0.26 -1.0 681,808 - SMc02309 0.26 -2.0 681,808 - SMc02309 0.26 -0.8 681,808 - SMc02309 0.26 -1.2 681,808 - SMc02309 0.26 +0.5 681,930 + SMc02309 0.51 +0.4 681,930 + SMc02309 0.51 -0.9 682,013 - SMc02309 0.69 -0.8 682,015 - SMc02309 0.69 -0.2 682,015 - SMc02309 0.69 +0.4 682,253 + -0.2 682,537 + +0.4 682,537 + -0.0 682,622 + -1.1
Or see this region's nucleotide sequence